RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 NISCHQ9Y2I1 1504 aa19.81■□□□□ 0.76
USP54-205ENST00000424265 DCAF8L2P0C7V8 631 aa17.41■□□□□ 0.38
USP54-205ENST00000424265 CCDC180Q9P1Z9 1646 aa17.23■□□□□ 0.35
USP54-205ENST00000424265 PELP1Q8IZL8 1130 aaKnown RBP17.11■□□□□ 0.33
USP54-205ENST00000424265 MYT1Q01538 1121 aa16.94■□□□□ 0.3
USP54-205ENST00000424265 ABCC9O60706 1549 aa16.7■□□□□ 0.26
USP54-205ENST00000424265 ZCCHC6Q5VYS8 1495 aaKnown RBP16.53■□□□□ 0.24
USP54-205ENST00000424265 SHROOM4Q9ULL8 1493 aa16.53■□□□□ 0.24
USP54-205ENST00000424265 DCAF1Q9Y4B6 1507 aa16.34■□□□□ 0.21
USP54-205ENST00000424265 NACADO15069 1562 aa16.32■□□□□ 0.2
USP54-205ENST00000424265 RB1CC1Q8TDY2 1594 aa16.3■□□□□ 0.2
USP54-205ENST00000424265 MYO15BQ96JP2 1530 aa16.2■□□□□ 0.18
USP54-205ENST00000424265 SUPT5HO00267 1087 aaKnown RBP16.17■□□□□ 0.18
USP54-205ENST00000424265 TTBK1Q5TCY1 1321 aaPredicted RBP16.04■□□□□ 0.16
USP54-205ENST00000424265 SCRIBQ14160 1630 aa15.96■□□□□ 0.15
USP54-205ENST00000424265 PABPN1Q86U42 306 aaKnown RBP eCLIP15.86■□□□□ 0.13
USP54-205ENST00000424265 HRCP23327 699 aa15.68■□□□□ 0.1
USP54-205ENST00000424265 ERICH6Q7L0X2 663 aa15.53■□□□□ 0.08
USP54-205ENST00000424265 BAZ1AQ9NRL2 1556 aaPredicted RBP15.5■□□□□ 0.07
USP54-205ENST00000424265 RSF1Q96T23 1441 aaPredicted RBP15.35■□□□□ 0.05
USP54-205ENST00000424265 TRIM41Q8WV44 630 aa15.33■□□□□ 0.04
USP54-205ENST00000424265 SMARCA2P51531 1590 aa15.3■□□□□ 0.04
USP54-205ENST00000424265 BAZ1BQ9UIG0 1483 aaKnown RBP15.28■□□□□ 0.04
USP54-205ENST00000424265 PRKCSHP14314 528 aaPredicted RBP15.27■□□□□ 0.04
USP54-205ENST00000424265 SCAF1Q9H7N4 1312 aaKnown RBP15.26■□□□□ 0.03
USP54-205ENST00000424265 CECR2Q9BXF3 1484 aa15.25■□□□□ 0.03
USP54-205ENST00000424265 PPARGC1BQ86YN6 1023 aaKnown RBP15.24■□□□□ 0.03
USP54-205ENST00000424265 CENPBP07199 599 aaPredicted RBP15.23■□□□□ 0.03
USP54-205ENST00000424265 BCL11AQ9H165 835 aa15.22■□□□□ 0.03
USP54-205ENST00000424265 SMARCA4P51532 1647 aa15.18■□□□□ 0.02
USP54-205ENST00000424265 MROH2BQ7Z745 1585 aa15.16■□□□□ 0.02
USP54-205ENST00000424265 FAM9AQ8IZU1 332 aaPredicted RBP15.13■□□□□ 0.01
USP54-205ENST00000424265 PCGF6Q9BYE7 350 aa15.11■□□□□ 0.01
USP54-205ENST00000424265 BICRAQ9NZM4 1560 aa15.11■□□□□ 0.01
USP54-205ENST00000424265 ATAD2BQ9ULI0 1458 aa15.08■□□□□ 0
USP54-205ENST00000424265 TOP2AP11388 1531 aaKnown RBP15.07■□□□□ 0
USP54-205ENST00000424265 EIF4G1Q04637 1599 aaKnown RBP15.05■□□□□ -0
USP54-205ENST00000424265 CHIC1Q5VXU3 224 aa15.05■□□□□ -0
USP54-205ENST00000424265 UNC13AQ9UPW8 1703 aa15.04■□□□□ -0
USP54-205ENST00000424265 NCAPD3P42695 1498 aa15□□□□□ -0.01
USP54-205ENST00000424265 WIZO95785 1651 aa14.96□□□□□ -0.02
USP54-205ENST00000424265 HMGXB3Q12766 1538 aa14.92□□□□□ -0.02
USP54-205ENST00000424265 APLP2Q06481 763 aa14.89□□□□□ -0.03
USP54-205ENST00000424265 SLC24A1O60721 1099 aa14.89□□□□□ -0.03
USP54-205ENST00000424265 CCDC88BA6NC98 1476 aa14.89□□□□□ -0.03
USP54-205ENST00000424265 UBTFP17480 764 aaKnown RBP14.86□□□□□ -0.03
USP54-205ENST00000424265 PDS5BQ9NTI5 1447 aa14.84□□□□□ -0.03
USP54-205ENST00000424265 GTF3C3Q9Y5Q9 886 aa14.84□□□□□ -0.03
USP54-205ENST00000424265 CC2D2AQ9P2K1 1620 aa14.83□□□□□ -0.04
USP54-205ENST00000424265 PEG3Q9GZU2 1588 aa14.83□□□□□ -0.04
USP54-205ENST00000424265 ACIN1Q9UKV3 1341 aaKnown RBP14.82□□□□□ -0.04
USP54-205ENST00000424265 ZEB1P37275 1124 aaPredicted RBP14.82□□□□□ -0.04
USP54-205ENST00000424265 CADPSQ9ULU8 1353 aa14.81□□□□□ -0.04
USP54-205ENST00000424265 EHMT2Q96KQ7 1210 aa14.79□□□□□ -0.04
USP54-205ENST00000424265 WRNQ14191 1432 aaPredicted RBP eCLIP14.79□□□□□ -0.04
USP54-205ENST00000424265 ERCC6Q03468 1493 aa14.76□□□□□ -0.05
USP54-205ENST00000424265 EEA1Q15075 1411 aa14.75□□□□□ -0.05
USP54-205ENST00000424265 ABCC8Q09428 1581 aa14.69□□□□□ -0.06
USP54-205ENST00000424265 CSRNP3Q8WYN3 585 aa14.68□□□□□ -0.06
USP54-205ENST00000424265 CEP164Q9UPV0 1460 aa14.64□□□□□ -0.07
USP54-205ENST00000424265 ANP32EQ9BTT0 268 aa14.62□□□□□ -0.07
USP54-205ENST00000424265 KIF27Q86VH2 1401 aa14.6□□□□□ -0.07
USP54-205ENST00000424265 CFTRP13569 1480 aa14.6□□□□□ -0.07
USP54-205ENST00000424265 FANCD2Q9BXW9 1451 aa14.59□□□□□ -0.07
USP54-205ENST00000424265 NEUROD1Q13562 356 aa14.59□□□□□ -0.07
USP54-205ENST00000424265 RANGAP1P46060 587 aaPredicted RBP14.56□□□□□ -0.08
USP54-205ENST00000424265 LAMC3Q9Y6N6 1575 aa14.54□□□□□ -0.08
USP54-205ENST00000424265 ATP1B4Q9UN42 357 aaPredicted RBP14.49□□□□□ -0.09
USP54-205ENST00000424265 FBLN2P98095 1184 aa14.47□□□□□ -0.09
USP54-205ENST00000424265 EIF5BO60841 1220 aaKnown RBP14.46□□□□□ -0.09
USP54-205ENST00000424265 SOGA1O94964 1423 aa14.46□□□□□ -0.1
USP54-205ENST00000424265 LOC105371045A0A1W2PR82 267 aa14.44□□□□□ -0.1
USP54-205ENST00000424265 GOLGA3Q08378 1498 aa14.44□□□□□ -0.1
USP54-205ENST00000424265 CUX2O14529 1486 aa14.43□□□□□ -0.1
USP54-205ENST00000424265 CHMP7Q8WUX9 453 aaPredicted RBP14.41□□□□□ -0.1
USP54-205ENST00000424265 MRC2Q9UBG0 1479 aa14.41□□□□□ -0.1
USP54-205ENST00000424265 DNAJC5BQ9UF47 199 aa14.37□□□□□ -0.11
USP54-205ENST00000424265 TRIM26Q12899 539 aaPredicted RBP14.33□□□□□ -0.12
USP54-205ENST00000424265 CARMIL1Q5VZK9 1371 aa14.33□□□□□ -0.12
USP54-205ENST00000424265 DNMBPQ6XZF7 1577 aa14.33□□□□□ -0.12
USP54-205ENST00000424265 YTHDC1Q96MU7 727 aaKnown RBP14.33□□□□□ -0.12
USP54-205ENST00000424265 NESP48681 1621 aa14.33□□□□□ -0.12
USP54-205ENST00000424265 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.32□□□□□ -0.12
USP54-205ENST00000424265 HNRNPUL2Q1KMD3 747 aaKnown RBP14.32□□□□□ -0.12
USP54-205ENST00000424265 FGD5Q6ZNL6 1462 aa14.32□□□□□ -0.12
USP54-205ENST00000424265 TNIKQ9UKE5 1360 aa14.3□□□□□ -0.12
USP54-205ENST00000424265 TOP2BQ02880 1626 aa14.3□□□□□ -0.12
USP54-205ENST00000424265 IFT140Q96RY7 1462 aa14.28□□□□□ -0.12
USP54-205ENST00000424265 TOPBP1Q92547 1522 aa14.28□□□□□ -0.12
USP54-205ENST00000424265 DAXXQ9UER7 740 aaPredicted RBP14.27□□□□□ -0.12
USP54-205ENST00000424265 CDK11AQ9UQ88 783 aaPredicted RBP14.26□□□□□ -0.13
USP54-205ENST00000424265 TDRD9Q8NDG6 1382 aaKnown RBP14.24□□□□□ -0.13
USP54-205ENST00000424265 CLIP1P30622 1438 aa14.24□□□□□ -0.13
USP54-205ENST00000424265 RAPGEF2Q9Y4G8 1499 aa14.22□□□□□ -0.13
USP54-205ENST00000424265 CUX1P39880 1505 aa14.21□□□□□ -0.13
USP54-205ENST00000424265 GAPVD1Q14C86 1478 aa14.21□□□□□ -0.13
USP54-205ENST00000424265 SYNJ1O43426 1573 aa14.2□□□□□ -0.14
USP54-205ENST00000424265 DIEXFQ68CQ4 756 aaKnown RBP14.19□□□□□ -0.14
USP54-205ENST00000424265 PRDM2Q13029 1718 aa14.18□□□□□ -0.14
USP54-205ENST00000424265 POLA1P09884 1462 aaPredicted RBP14.18□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms