RNA–Protein interactions for RNA: ENST00000416742.5

LINC00494-201, long intergenic non-protein coding RNA 494, humanhuman

TSL 1 (best) BASIC

Gene LINC00494, Length 3,544 nt, Biotype lincRNA.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00494-201ENST00000416742 NISCHQ9Y2I1 1504 aa21■□□□□ 0.95
LINC00494-201ENST00000416742 SHROOM4Q9ULL8 1493 aa17.91■□□□□ 0.46
LINC00494-201ENST00000416742 CCDC180Q9P1Z9 1646 aa17.87■□□□□ 0.45
LINC00494-201ENST00000416742 DCAF8L2P0C7V8 631 aa17.73■□□□□ 0.43
LINC00494-201ENST00000416742 ZCCHC6Q5VYS8 1495 aaKnown RBP17.69■□□□□ 0.42
LINC00494-201ENST00000416742 SUPT5HO00267 1087 aaKnown RBP17.51■□□□□ 0.39
LINC00494-201ENST00000416742 DCAF1Q9Y4B6 1507 aa17.17■□□□□ 0.34
LINC00494-201ENST00000416742 ABCC9O60706 1549 aa16.9■□□□□ 0.3
LINC00494-201ENST00000416742 CHIC1Q5VXU3 224 aa16.84■□□□□ 0.29
LINC00494-201ENST00000416742 SCRIBQ14160 1630 aa16.82■□□□□ 0.28
LINC00494-201ENST00000416742 MYO15BQ96JP2 1530 aa16.74■□□□□ 0.27
LINC00494-201ENST00000416742 NACADO15069 1562 aa16.63■□□□□ 0.25
LINC00494-201ENST00000416742 RSF1Q96T23 1441 aaPredicted RBP16.57■□□□□ 0.24
LINC00494-201ENST00000416742 CECR2Q9BXF3 1484 aa16.43■□□□□ 0.22
LINC00494-201ENST00000416742 RB1CC1Q8TDY2 1594 aa16.42■□□□□ 0.22
LINC00494-201ENST00000416742 LOC105371045A0A1W2PR82 267 aa16.39■□□□□ 0.21
LINC00494-201ENST00000416742 MROH2BQ7Z745 1585 aa16.33■□□□□ 0.2
LINC00494-201ENST00000416742 TRIM41Q8WV44 630 aa16.3■□□□□ 0.2
LINC00494-201ENST00000416742 WIZO95785 1651 aa16.22■□□□□ 0.19
LINC00494-201ENST00000416742 FAM9AQ8IZU1 332 aaPredicted RBP16.22■□□□□ 0.19
LINC00494-201ENST00000416742 PABPN1Q86U42 306 aaKnown RBP eCLIP16.18■□□□□ 0.18
LINC00494-201ENST00000416742 PCGF6Q9BYE7 350 aa16.17■□□□□ 0.18
LINC00494-201ENST00000416742 BAZ1AQ9NRL2 1556 aaPredicted RBP16.14■□□□□ 0.17
LINC00494-201ENST00000416742 EHMT2Q96KQ7 1210 aa16.12■□□□□ 0.17
LINC00494-201ENST00000416742 UNC13AQ9UPW8 1703 aa16.09■□□□□ 0.17
LINC00494-201ENST00000416742 SMARCA4P51532 1647 aa16.02■□□□□ 0.15
LINC00494-201ENST00000416742 HRCP23327 699 aa15.96■□□□□ 0.15
LINC00494-201ENST00000416742 TOP2AP11388 1531 aaKnown RBP15.94■□□□□ 0.14
LINC00494-201ENST00000416742 BICRAQ9NZM4 1560 aa15.94■□□□□ 0.14
LINC00494-201ENST00000416742 CCDC88BA6NC98 1476 aa15.92■□□□□ 0.14
LINC00494-201ENST00000416742 TRIM26Q12899 539 aaPredicted RBP15.87■□□□□ 0.13
LINC00494-201ENST00000416742 SMARCA2P51531 1590 aa15.85■□□□□ 0.13
LINC00494-201ENST00000416742 ABCC8Q09428 1581 aa15.81■□□□□ 0.12
LINC00494-201ENST00000416742 EIF4G1Q04637 1599 aaKnown RBP15.81■□□□□ 0.12
LINC00494-201ENST00000416742 PPARGC1BQ86YN6 1023 aaKnown RBP15.71■□□□□ 0.11
LINC00494-201ENST00000416742 ATAD2BQ9ULI0 1458 aa15.69■□□□□ 0.1
LINC00494-201ENST00000416742 BAZ1BQ9UIG0 1483 aaKnown RBP15.66■□□□□ 0.1
LINC00494-201ENST00000416742 PEG3Q9GZU2 1588 aa15.66■□□□□ 0.1
LINC00494-201ENST00000416742 SOGA1O94964 1423 aa15.65■□□□□ 0.1
LINC00494-201ENST00000416742 CSRNP3Q8WYN3 585 aa15.61■□□□□ 0.09
LINC00494-201ENST00000416742 WRNQ14191 1432 aaPredicted RBP eCLIP15.6■□□□□ 0.09
LINC00494-201ENST00000416742 UBTFP17480 764 aaKnown RBP15.59■□□□□ 0.09
LINC00494-201ENST00000416742 RUSC2Q8N2Y8 1516 aa15.58■□□□□ 0.08
LINC00494-201ENST00000416742 TTBK1Q5TCY1 1321 aaPredicted RBP15.53■□□□□ 0.08
LINC00494-201ENST00000416742 EEA1Q15075 1411 aa15.51■□□□□ 0.07
LINC00494-201ENST00000416742 CEP162Q5TB80 1403 aa15.48■□□□□ 0.07
LINC00494-201ENST00000416742 SYNJ1O43426 1573 aa15.47■□□□□ 0.07
LINC00494-201ENST00000416742 TNIKQ9UKE5 1360 aa15.47■□□□□ 0.07
LINC00494-201ENST00000416742 ZEB1P37275 1124 aaPredicted RBP15.43■□□□□ 0.06
LINC00494-201ENST00000416742 NCAPD3P42695 1498 aa15.41■□□□□ 0.06
LINC00494-201ENST00000416742 GOLGA3Q08378 1498 aa15.41■□□□□ 0.06
LINC00494-201ENST00000416742 RANGAP1P46060 587 aaPredicted RBP15.39■□□□□ 0.05
LINC00494-201ENST00000416742 HMGXB3Q12766 1538 aa15.35■□□□□ 0.05
LINC00494-201ENST00000416742 CEP164Q9UPV0 1460 aa15.34■□□□□ 0.05
LINC00494-201ENST00000416742 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.32■□□□□ 0.04
LINC00494-201ENST00000416742 CCER1Q8TC90 406 aaPredicted RBP15.29■□□□□ 0.04
LINC00494-201ENST00000416742 TOP2BQ02880 1626 aa15.28■□□□□ 0.04
LINC00494-201ENST00000416742 RAPGEF2Q9Y4G8 1499 aa15.26■□□□□ 0.03
LINC00494-201ENST00000416742 CLIP1P30622 1438 aa15.26■□□□□ 0.03
LINC00494-201ENST00000416742 KIF21BO75037 1637 aa15.25■□□□□ 0.03
LINC00494-201ENST00000416742 CFTRP13569 1480 aa15.23■□□□□ 0.03
LINC00494-201ENST00000416742 APLP2Q06481 763 aa15.21■□□□□ 0.03
LINC00494-201ENST00000416742 CUX1P39880 1505 aa15.21■□□□□ 0.02
LINC00494-201ENST00000416742 BIVM-ERCC5R4GMW8 1640 aa15.2■□□□□ 0.02
LINC00494-201ENST00000416742 CADPSQ9ULU8 1353 aa15.15■□□□□ 0.02
LINC00494-201ENST00000416742 KIF27Q86VH2 1401 aa15.15■□□□□ 0.02
LINC00494-201ENST00000416742 CC2D2AQ9P2K1 1620 aa15.13■□□□□ 0.01
LINC00494-201ENST00000416742 VPS8Q8N3P4 1428 aa15.13■□□□□ 0.01
LINC00494-201ENST00000416742 HNRNPUL2Q1KMD3 747 aaKnown RBP15.12■□□□□ 0.01
LINC00494-201ENST00000416742 PRXQ9BXM0 1461 aa15.1■□□□□ 0.01
LINC00494-201ENST00000416742 CUX2O14529 1486 aa15.05■□□□□ 0
LINC00494-201ENST00000416742 ERICH3Q5RHP9 1530 aa15.05■□□□□ -0
LINC00494-201ENST00000416742 FGD5Q6ZNL6 1462 aa15□□□□□ -0.01
LINC00494-201ENST00000416742 PRDM2Q13029 1718 aa14.99□□□□□ -0.01
LINC00494-201ENST00000416742 IGF1RP08069 1367 aa14.99□□□□□ -0.01
LINC00494-201ENST00000416742 FANCD2Q9BXW9 1451 aa14.99□□□□□ -0.01
LINC00494-201ENST00000416742 ARAP1Q96P48 1450 aa14.97□□□□□ -0.01
LINC00494-201ENST00000416742 NESP48681 1621 aa14.96□□□□□ -0.01
LINC00494-201ENST00000416742 KANK4Q5T7N3 995 aaPredicted RBP14.96□□□□□ -0.01
LINC00494-201ENST00000416742 CARMIL1Q5VZK9 1371 aa14.96□□□□□ -0.02
LINC00494-201ENST00000416742 DNAJC5BQ9UF47 199 aa14.91□□□□□ -0.02
LINC00494-201ENST00000416742 RAD54L2Q9Y4B4 1467 aa14.9□□□□□ -0.02
LINC00494-201ENST00000416742 ARHGAP35Q9NRY4 1499 aa14.9□□□□□ -0.02
LINC00494-201ENST00000416742 P3H3Q8IVL6 736 aa14.89□□□□□ -0.03
LINC00494-201ENST00000416742 ATP1B4Q9UN42 357 aaPredicted RBP14.87□□□□□ -0.03
LINC00494-201ENST00000416742 TOPBP1Q92547 1522 aa14.85□□□□□ -0.03
LINC00494-201ENST00000416742 ITGAEP38570 1179 aa14.84□□□□□ -0.03
LINC00494-201ENST00000416742 DNMBPQ6XZF7 1577 aa14.84□□□□□ -0.03
LINC00494-201ENST00000416742 POLA1P09884 1462 aaPredicted RBP14.84□□□□□ -0.03
LINC00494-201ENST00000416742 DIEXFQ68CQ4 756 aaKnown RBP14.83□□□□□ -0.04
LINC00494-201ENST00000416742 ABCA10Q8WWZ4 1543 aa14.78□□□□□ -0.04
LINC00494-201ENST00000416742 TDRD9Q8NDG6 1382 aaKnown RBP14.77□□□□□ -0.04
LINC00494-201ENST00000416742 ZNF316A6NFI3 1004 aaPredicted RBP14.77□□□□□ -0.05
LINC00494-201ENST00000416742 LAMC3Q9Y6N6 1575 aa14.76□□□□□ -0.05
LINC00494-201ENST00000416742 URB2Q14146 1524 aaKnown RBP14.76□□□□□ -0.05
LINC00494-201ENST00000416742 PDS5BQ9NTI5 1447 aa14.76□□□□□ -0.05
LINC00494-201ENST00000416742 CCNB3Q8WWL7 1395 aa14.73□□□□□ -0.05
LINC00494-201ENST00000416742 FHOD3Q2V2M9 1422 aa14.72□□□□□ -0.05
LINC00494-201ENST00000416742 RRBP1Q9P2E9 1410 aaKnown RBP14.71□□□□□ -0.05
LINC00494-201ENST00000416742 FHAD1B1AJZ9 1412 aa14.7□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 148.2 ms