RNA–Protein interactions for RNA: ENST00000415357.1

LINC01090-201, Transcript of long intergenic non-protein coding RNA 1090, humanhuman

TSL 3 BASIC

Gene LINC01090, Length 881 nt, Biotype lincRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01090-201ENST00000415357 AEBP2Q6ZN18 517 aaPredicted RBP26.75■■□□□ 1.87
LINC01090-201ENST00000415357 CHIC1Q5VXU3 224 aa26.09■■□□□ 1.77
LINC01090-201ENST00000415357 NISCHQ9Y2I1 1504 aa23.59■■□□□ 1.37
LINC01090-201ENST00000415357 PHF23Q9BUL5 403 aaPredicted RBP22.96■■□□□ 1.27
LINC01090-201ENST00000415357 SENP3Q9H4L4 574 aaPredicted RBP22.69■■□□□ 1.22
LINC01090-201ENST00000415357 PLPPR3Q6T4P5 718 aa21.19■□□□□ 0.98
LINC01090-201ENST00000415357 FOXD1Q16676 465 aa21.07■□□□□ 0.96
LINC01090-201ENST00000415357 CCDC180Q9P1Z9 1646 aa21.01■□□□□ 0.95
LINC01090-201ENST00000415357 ABCC9O60706 1549 aa20.76■□□□□ 0.91
LINC01090-201ENST00000415357 ADRA2BP18089 450 aa20.27■□□□□ 0.84
LINC01090-201ENST00000415357 PPP6R1Q9UPN7 881 aa20.27■□□□□ 0.84
LINC01090-201ENST00000415357 PIAS4Q8N2W9 510 aaPredicted RBP19.92■□□□□ 0.78
LINC01090-201ENST00000415357 RB1CC1Q8TDY2 1594 aa19.85■□□□□ 0.77
LINC01090-201ENST00000415357 DCAF8L2P0C7V8 631 aa19.78■□□□□ 0.76
LINC01090-201ENST00000415357 NACADO15069 1562 aa19.78■□□□□ 0.76
LINC01090-201ENST00000415357 ZCCHC6Q5VYS8 1495 aaKnown RBP19.64■□□□□ 0.73
LINC01090-201ENST00000415357 MYO15BQ96JP2 1530 aa19.58■□□□□ 0.73
LINC01090-201ENST00000415357 DCAF1Q9Y4B6 1507 aa19.46■□□□□ 0.71
LINC01090-201ENST00000415357 UNC13AQ9UPW8 1703 aa19.44■□□□□ 0.7
LINC01090-201ENST00000415357 MSH5O43196 834 aa19.43■□□□□ 0.7
LINC01090-201ENST00000415357 PABPN1Q86U42 306 aaKnown RBP eCLIP19.37■□□□□ 0.69
LINC01090-201ENST00000415357 BICRAQ9NZM4 1560 aa19.3■□□□□ 0.68
LINC01090-201ENST00000415357 SCRIBQ14160 1630 aa19.23■□□□□ 0.67
LINC01090-201ENST00000415357 DNAJC5BQ9UF47 199 aa19.17■□□□□ 0.66
LINC01090-201ENST00000415357 SHROOM4Q9ULL8 1493 aa19■□□□□ 0.63
LINC01090-201ENST00000415357 EIF4G1Q04637 1599 aaKnown RBP18.79■□□□□ 0.6
LINC01090-201ENST00000415357 CC2D2AQ9P2K1 1620 aa18.75■□□□□ 0.59
LINC01090-201ENST00000415357 PPP4R3CPQ6ZMV5 832 aa18.68■□□□□ 0.58
LINC01090-201ENST00000415357 CECR2Q9BXF3 1484 aa18.64■□□□□ 0.57
LINC01090-201ENST00000415357 SCAF1Q9H7N4 1312 aaKnown RBP18.5■□□□□ 0.55
LINC01090-201ENST00000415357 MAPK8IP2Q13387 824 aaPredicted RBP18.4■□□□□ 0.54
LINC01090-201ENST00000415357 SMARCA4P51532 1647 aa18.35■□□□□ 0.53
LINC01090-201ENST00000415357 BAZ1AQ9NRL2 1556 aaPredicted RBP18.28■□□□□ 0.52
LINC01090-201ENST00000415357 ATAD2BQ9ULI0 1458 aa18.27■□□□□ 0.52
LINC01090-201ENST00000415357 KCNA4P22459 653 aa18.26■□□□□ 0.51
LINC01090-201ENST00000415357 NCAPD3P42695 1498 aa18.25■□□□□ 0.51
LINC01090-201ENST00000415357 SMARCA2P51531 1590 aa18.22■□□□□ 0.51
LINC01090-201ENST00000415357 MROH2BQ7Z745 1585 aa18.21■□□□□ 0.51
LINC01090-201ENST00000415357 NCBP3Q53F19 620 aaKnown RBP18.17■□□□□ 0.5
LINC01090-201ENST00000415357 HMGXB3Q12766 1538 aa18.17■□□□□ 0.5
LINC01090-201ENST00000415357 CNKSR2Q8WXI2 1034 aa18.14■□□□□ 0.49
LINC01090-201ENST00000415357 PEG3Q9GZU2 1588 aa18.13■□□□□ 0.49
LINC01090-201ENST00000415357 BAZ1BQ9UIG0 1483 aaKnown RBP18.12■□□□□ 0.49
LINC01090-201ENST00000415357 DMRT2Q9Y5R5 561 aa18.1■□□□□ 0.49
LINC01090-201ENST00000415357 WIZO95785 1651 aa18.02■□□□□ 0.47
LINC01090-201ENST00000415357 NESP48681 1621 aa17.94■□□□□ 0.46
LINC01090-201ENST00000415357 RSF1Q96T23 1441 aaPredicted RBP17.93■□□□□ 0.46
LINC01090-201ENST00000415357 NPM3O75607 178 aaKnown RBP17.93■□□□□ 0.46
LINC01090-201ENST00000415357 ERCC6Q03468 1493 aa17.87■□□□□ 0.45
LINC01090-201ENST00000415357 LAMC3Q9Y6N6 1575 aa17.8■□□□□ 0.44
LINC01090-201ENST00000415357 TOP2AP11388 1531 aaKnown RBP17.78■□□□□ 0.44
LINC01090-201ENST00000415357 RNF216Q9NWF9 866 aaPredicted RBP17.78■□□□□ 0.44
LINC01090-201ENST00000415357 POTEDQ86YR6 584 aa17.73■□□□□ 0.43
LINC01090-201ENST00000415357 CADPSQ9ULU8 1353 aa17.72■□□□□ 0.43
LINC01090-201ENST00000415357 KIF21AQ7Z4S6 1674 aa17.71■□□□□ 0.42
LINC01090-201ENST00000415357 CUX2O14529 1486 aa17.7■□□□□ 0.42
LINC01090-201ENST00000415357 HOXD11P31277 338 aaPredicted RBP17.7■□□□□ 0.42
LINC01090-201ENST00000415357 THOC2Q8NI27 1593 aaKnown RBP17.68■□□□□ 0.42
LINC01090-201ENST00000415357 PDS5BQ9NTI5 1447 aa17.67■□□□□ 0.42
LINC01090-201ENST00000415357 CFTRP13569 1480 aa17.59■□□□□ 0.41
LINC01090-201ENST00000415357 CCDC88BA6NC98 1476 aa17.58■□□□□ 0.41
LINC01090-201ENST00000415357 FANCD2Q9BXW9 1451 aa17.55■□□□□ 0.4
LINC01090-201ENST00000415357 MRC2Q9UBG0 1479 aa17.54■□□□□ 0.4
LINC01090-201ENST00000415357 CEP164Q9UPV0 1460 aa17.54■□□□□ 0.4
LINC01090-201ENST00000415357 WDR62O43379 1518 aa17.48■□□□□ 0.39
LINC01090-201ENST00000415357 PRDM2Q13029 1718 aa17.45■□□□□ 0.38
LINC01090-201ENST00000415357 DCAF8L1A6NGE4 600 aa17.43■□□□□ 0.38
LINC01090-201ENST00000415357 URB2Q14146 1524 aaKnown RBP17.4■□□□□ 0.38
LINC01090-201ENST00000415357 SUPT5HO00267 1087 aaKnown RBP17.39■□□□□ 0.37
LINC01090-201ENST00000415357 SLC4A1APQ9BWU0 796 aaKnown RBP17.39■□□□□ 0.37
LINC01090-201ENST00000415357 DNAJC5Q9H3Z4 198 aa17.31■□□□□ 0.36
LINC01090-201ENST00000415357 TOPBP1Q92547 1522 aa17.26■□□□□ 0.35
LINC01090-201ENST00000415357 DNMBPQ6XZF7 1577 aa17.22■□□□□ 0.35
LINC01090-201ENST00000415357 ABCC8Q09428 1581 aa17.17■□□□□ 0.34
LINC01090-201ENST00000415357 IFT140Q96RY7 1462 aa17.15■□□□□ 0.34
LINC01090-201ENST00000415357 ZNF608Q9ULD9 1512 aaPredicted RBP17.14■□□□□ 0.33
LINC01090-201ENST00000415357 POLA1P09884 1462 aaPredicted RBP17.11■□□□□ 0.33
LINC01090-201ENST00000415357 CUX1P39880 1505 aa17.1■□□□□ 0.33
LINC01090-201ENST00000415357 TARBP1Q13395 1621 aaKnown RBP17.08■□□□□ 0.32
LINC01090-201ENST00000415357 EIF4G3O43432 1585 aaKnown RBP17.06■□□□□ 0.32
LINC01090-201ENST00000415357 RAD54L2Q9Y4B4 1467 aa17.05■□□□□ 0.32
LINC01090-201ENST00000415357 FGD5Q6ZNL6 1462 aa17.05■□□□□ 0.32
LINC01090-201ENST00000415357 AQRO60306 1485 aaKnown RBP eCLIP17.01■□□□□ 0.31
LINC01090-201ENST00000415357 SOGA1O94964 1423 aa17■□□□□ 0.31
LINC01090-201ENST00000415357 TDRD9Q8NDG6 1382 aaKnown RBP16.95■□□□□ 0.3
LINC01090-201ENST00000415357 EHMT2Q96KQ7 1210 aa16.95■□□□□ 0.3
LINC01090-201ENST00000415357 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.94■□□□□ 0.3
LINC01090-201ENST00000415357 SLC4A2P04920 1241 aa16.92■□□□□ 0.3
LINC01090-201ENST00000415357 OSCARQ8IYS5 282 aa16.92■□□□□ 0.3
LINC01090-201ENST00000415357 WDR97A6NE52 1622 aa16.92■□□□□ 0.3
LINC01090-201ENST00000415357 SYNJ1O43426 1573 aa16.91■□□□□ 0.3
LINC01090-201ENST00000415357 WRNQ14191 1432 aaPredicted RBP eCLIP16.9■□□□□ 0.3
LINC01090-201ENST00000415357 BIVM-ERCC5R4GMW8 1640 aa16.88■□□□□ 0.29
LINC01090-201ENST00000415357 TOP2BQ02880 1626 aa16.88■□□□□ 0.29
LINC01090-201ENST00000415357 CHD1O14646 1710 aa16.87■□□□□ 0.29
LINC01090-201ENST00000415357 SNAPC4Q5SXM2 1469 aa16.86■□□□□ 0.29
LINC01090-201ENST00000415357 ABCA10Q8WWZ4 1543 aa16.85■□□□□ 0.29
LINC01090-201ENST00000415357 FBLN2P98095 1184 aa16.83■□□□□ 0.28
LINC01090-201ENST00000415357 ABCA5Q8WWZ7 1642 aa16.82■□□□□ 0.28
LINC01090-201ENST00000415357 GRIN2BQ13224 1484 aa16.82■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 6.8 ms