RNA–Protein interactions for RNA: ENST00000413186.6

SYNE1-211, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 4,860 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-211ENST00000413186 NISCHQ9Y2I1 1504 aa17.22■□□□□ 0.35
SYNE1-211ENST00000413186 DCAF8L2P0C7V8 631 aa15.74■□□□□ 0.11
SYNE1-211ENST00000413186 SHROOM4Q9ULL8 1493 aa14.84□□□□□ -0.03
SYNE1-211ENST00000413186 CCDC180Q9P1Z9 1646 aa14.76□□□□□ -0.05
SYNE1-211ENST00000413186 ABCC9O60706 1549 aa14.68□□□□□ -0.06
SYNE1-211ENST00000413186 SUPT5HO00267 1087 aaKnown RBP14.62□□□□□ -0.07
SYNE1-211ENST00000413186 ZCCHC6Q5VYS8 1495 aaKnown RBP14.32□□□□□ -0.12
SYNE1-211ENST00000413186 RB1CC1Q8TDY2 1594 aa14.11□□□□□ -0.15
SYNE1-211ENST00000413186 PABPN1Q86U42 306 aaKnown RBP eCLIP14.1□□□□□ -0.15
SYNE1-211ENST00000413186 NACADO15069 1562 aa14.09□□□□□ -0.15
SYNE1-211ENST00000413186 DCAF1Q9Y4B6 1507 aa14.03□□□□□ -0.16
SYNE1-211ENST00000413186 SCRIBQ14160 1630 aa13.96□□□□□ -0.17
SYNE1-211ENST00000413186 MYO15BQ96JP2 1530 aa13.86□□□□□ -0.19
SYNE1-211ENST00000413186 TRIM41Q8WV44 630 aa13.76□□□□□ -0.21
SYNE1-211ENST00000413186 FAM9AQ8IZU1 332 aaPredicted RBP13.61□□□□□ -0.23
SYNE1-211ENST00000413186 EHMT2Q96KQ7 1210 aa13.57□□□□□ -0.24
SYNE1-211ENST00000413186 BAZ1AQ9NRL2 1556 aaPredicted RBP13.48□□□□□ -0.25
SYNE1-211ENST00000413186 APLP2Q06481 763 aa13.47□□□□□ -0.25
SYNE1-211ENST00000413186 RSF1Q96T23 1441 aaPredicted RBP13.45□□□□□ -0.26
SYNE1-211ENST00000413186 CHIC1Q5VXU3 224 aa13.44□□□□□ -0.26
SYNE1-211ENST00000413186 UBTFP17480 764 aaKnown RBP13.4□□□□□ -0.26
SYNE1-211ENST00000413186 BAZ1BQ9UIG0 1483 aaKnown RBP13.37□□□□□ -0.27
SYNE1-211ENST00000413186 CECR2Q9BXF3 1484 aa13.36□□□□□ -0.27
SYNE1-211ENST00000413186 MYT1Q01538 1121 aa13.31□□□□□ -0.28
SYNE1-211ENST00000413186 SMARCA2P51531 1590 aa13.27□□□□□ -0.28
SYNE1-211ENST00000413186 RANGAP1P46060 587 aaPredicted RBP13.27□□□□□ -0.29
SYNE1-211ENST00000413186 MROH2BQ7Z745 1585 aa13.24□□□□□ -0.29
SYNE1-211ENST00000413186 ATP1B4Q9UN42 357 aaPredicted RBP13.17□□□□□ -0.3
SYNE1-211ENST00000413186 SMARCA4P51532 1647 aa13.15□□□□□ -0.31
SYNE1-211ENST00000413186 ATAD2BQ9ULI0 1458 aa13.12□□□□□ -0.31
SYNE1-211ENST00000413186 TOP2AP11388 1531 aaKnown RBP13.08□□□□□ -0.32
SYNE1-211ENST00000413186 CSRNP3Q8WYN3 585 aa13.07□□□□□ -0.32
SYNE1-211ENST00000413186 LOC105371045A0A1W2PR82 267 aa13.05□□□□□ -0.32
SYNE1-211ENST00000413186 WIZO95785 1651 aa13.04□□□□□ -0.32
SYNE1-211ENST00000413186 EIF4G1Q04637 1599 aaKnown RBP13.04□□□□□ -0.32
SYNE1-211ENST00000413186 CCDC88BA6NC98 1476 aa13.03□□□□□ -0.32
SYNE1-211ENST00000413186 TTBK1Q5TCY1 1321 aaPredicted RBP13.01□□□□□ -0.33
SYNE1-211ENST00000413186 PELP1Q8IZL8 1130 aaKnown RBP13.01□□□□□ -0.33
SYNE1-211ENST00000413186 WRNQ14191 1432 aaPredicted RBP eCLIP13.01□□□□□ -0.33
SYNE1-211ENST00000413186 BICRAQ9NZM4 1560 aa13□□□□□ -0.33
SYNE1-211ENST00000413186 FBLN2P98095 1184 aa13□□□□□ -0.33
SYNE1-211ENST00000413186 ERCC6Q03468 1493 aa13□□□□□ -0.33
SYNE1-211ENST00000413186 NCAPD3P42695 1498 aa12.99□□□□□ -0.33
SYNE1-211ENST00000413186 PDS5BQ9NTI5 1447 aa12.98□□□□□ -0.33
SYNE1-211ENST00000413186 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.95□□□□□ -0.34
SYNE1-211ENST00000413186 HNRNPUL2Q1KMD3 747 aaKnown RBP12.95□□□□□ -0.34
SYNE1-211ENST00000413186 CADPSQ9ULU8 1353 aa12.95□□□□□ -0.34
SYNE1-211ENST00000413186 EEA1Q15075 1411 aa12.93□□□□□ -0.34
SYNE1-211ENST00000413186 UNC13AQ9UPW8 1703 aa12.87□□□□□ -0.35
SYNE1-211ENST00000413186 PCGF6Q9BYE7 350 aa12.86□□□□□ -0.35
SYNE1-211ENST00000413186 KIF27Q86VH2 1401 aa12.86□□□□□ -0.35
SYNE1-211ENST00000413186 HMGXB3Q12766 1538 aa12.84□□□□□ -0.35
SYNE1-211ENST00000413186 CC2D2AQ9P2K1 1620 aa12.84□□□□□ -0.35
SYNE1-211ENST00000413186 CHMP7Q8WUX9 453 aaPredicted RBP12.82□□□□□ -0.36
SYNE1-211ENST00000413186 ZEB1P37275 1124 aaPredicted RBP12.8□□□□□ -0.36
SYNE1-211ENST00000413186 CEP164Q9UPV0 1460 aa12.78□□□□□ -0.36
SYNE1-211ENST00000413186 PPARGC1BQ86YN6 1023 aaKnown RBP12.77□□□□□ -0.36
SYNE1-211ENST00000413186 TRIM26Q12899 539 aaPredicted RBP12.77□□□□□ -0.37
SYNE1-211ENST00000413186 ABCC8Q09428 1581 aa12.76□□□□□ -0.37
SYNE1-211ENST00000413186 FANCD2Q9BXW9 1451 aa12.75□□□□□ -0.37
SYNE1-211ENST00000413186 CUX2O14529 1486 aa12.72□□□□□ -0.37
SYNE1-211ENST00000413186 P3H3Q8IVL6 736 aa12.72□□□□□ -0.37
SYNE1-211ENST00000413186 SOGA1O94964 1423 aa12.72□□□□□ -0.37
SYNE1-211ENST00000413186 GOLGA3Q08378 1498 aa12.71□□□□□ -0.37
SYNE1-211ENST00000413186 CDK11AQ9UQ88 783 aaPredicted RBP12.7□□□□□ -0.38
SYNE1-211ENST00000413186 PEG3Q9GZU2 1588 aa12.7□□□□□ -0.38
SYNE1-211ENST00000413186 MYT1LQ9UL68 1186 aa12.68□□□□□ -0.38
SYNE1-211ENST00000413186 CFTRP13569 1480 aa12.68□□□□□ -0.38
SYNE1-211ENST00000413186 ERICH6Q7L0X2 663 aa12.68□□□□□ -0.38
SYNE1-211ENST00000413186 CCER1Q8TC90 406 aaPredicted RBP12.67□□□□□ -0.38
SYNE1-211ENST00000413186 CARMIL1Q5VZK9 1371 aa12.65□□□□□ -0.38
SYNE1-211ENST00000413186 ITGAEP38570 1179 aa12.64□□□□□ -0.39
SYNE1-211ENST00000413186 NPM1P06748 294 aaKnown RBP eCLIP12.63□□□□□ -0.39
SYNE1-211ENST00000413186 CLIP1P30622 1438 aa12.62□□□□□ -0.39
SYNE1-211ENST00000413186 DNAJC5BQ9UF47 199 aa12.61□□□□□ -0.39
SYNE1-211ENST00000413186 TDRD9Q8NDG6 1382 aaKnown RBP12.61□□□□□ -0.39
SYNE1-211ENST00000413186 TNIKQ9UKE5 1360 aa12.61□□□□□ -0.39
SYNE1-211ENST00000413186 FAM50AQ14320 339 aaKnown RBP12.59□□□□□ -0.39
SYNE1-211ENST00000413186 LAMC3Q9Y6N6 1575 aa12.56□□□□□ -0.4
SYNE1-211ENST00000413186 NESP48681 1621 aa12.54□□□□□ -0.4
SYNE1-211ENST00000413186 ARID3CA6NKF2 412 aa12.54□□□□□ -0.4
SYNE1-211ENST00000413186 CEP162Q5TB80 1403 aa12.54□□□□□ -0.4
SYNE1-211ENST00000413186 FGD5Q6ZNL6 1462 aa12.53□□□□□ -0.4
SYNE1-211ENST00000413186 MRC2Q9UBG0 1479 aa12.52□□□□□ -0.41
SYNE1-211ENST00000413186 RAPGEF2Q9Y4G8 1499 aa12.48□□□□□ -0.41
SYNE1-211ENST00000413186 HRCP23327 699 aa12.47□□□□□ -0.41
SYNE1-211ENST00000413186 MTUS2Q5JR59 1369 aa12.47□□□□□ -0.41
SYNE1-211ENST00000413186 GAPVD1Q14C86 1478 aa12.45□□□□□ -0.42
SYNE1-211ENST00000413186 CARMIL2Q6F5E8 1435 aa12.45□□□□□ -0.42
SYNE1-211ENST00000413186 FHAD1B1AJZ9 1412 aa12.45□□□□□ -0.42
SYNE1-211ENST00000413186 TOPBP1Q92547 1522 aa12.44□□□□□ -0.42
SYNE1-211ENST00000413186 PLEKHD1A6NEE1 506 aa12.43□□□□□ -0.42
SYNE1-211ENST00000413186 RAD54L2Q9Y4B4 1467 aa12.43□□□□□ -0.42
SYNE1-211ENST00000413186 DNMBPQ6XZF7 1577 aa12.42□□□□□ -0.42
SYNE1-211ENST00000413186 IFT140Q96RY7 1462 aa12.42□□□□□ -0.42
SYNE1-211ENST00000413186 ZNF777Q9ULD5 760 aaPredicted RBP12.42□□□□□ -0.42
SYNE1-211ENST00000413186 TOP2BQ02880 1626 aa12.4□□□□□ -0.42
SYNE1-211ENST00000413186 IGF1RP08069 1367 aa12.39□□□□□ -0.43
SYNE1-211ENST00000413186 TRIM52Q96A61 297 aa12.39□□□□□ -0.43
SYNE1-211ENST00000413186 SYNJ1O43426 1573 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms