RNA–Protein interactions for RNA: ENST00000407008.7

NLK-201, Transcript of nemo like kinase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NLK, Length 4,047 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NLK-201ENST00000407008 NISCHQ9Y2I1 1504 aa17.07■□□□□ 0.32
NLK-201ENST00000407008 DCAF8L2P0C7V8 631 aa14.97□□□□□ -0.01
NLK-201ENST00000407008 CCDC180Q9P1Z9 1646 aa14.72□□□□□ -0.05
NLK-201ENST00000407008 SHROOM4Q9ULL8 1493 aa14.47□□□□□ -0.09
NLK-201ENST00000407008 ZCCHC6Q5VYS8 1495 aaKnown RBP14.29□□□□□ -0.12
NLK-201ENST00000407008 SUPT5HO00267 1087 aaKnown RBP14.22□□□□□ -0.13
NLK-201ENST00000407008 ABCC9O60706 1549 aa14.17□□□□□ -0.14
NLK-201ENST00000407008 DCAF1Q9Y4B6 1507 aa14.03□□□□□ -0.16
NLK-201ENST00000407008 NACADO15069 1562 aa13.89□□□□□ -0.19
NLK-201ENST00000407008 MYO15BQ96JP2 1530 aa13.82□□□□□ -0.2
NLK-201ENST00000407008 RB1CC1Q8TDY2 1594 aa13.82□□□□□ -0.2
NLK-201ENST00000407008 SCRIBQ14160 1630 aa13.73□□□□□ -0.21
NLK-201ENST00000407008 PABPN1Q86U42 306 aaKnown RBP eCLIP13.51□□□□□ -0.25
NLK-201ENST00000407008 TRIM41Q8WV44 630 aa13.41□□□□□ -0.26
NLK-201ENST00000407008 PELP1Q8IZL8 1130 aaKnown RBP13.38□□□□□ -0.27
NLK-201ENST00000407008 CHIC1Q5VXU3 224 aa13.33□□□□□ -0.28
NLK-201ENST00000407008 RSF1Q96T23 1441 aaPredicted RBP13.33□□□□□ -0.28
NLK-201ENST00000407008 BAZ1AQ9NRL2 1556 aaPredicted RBP13.32□□□□□ -0.28
NLK-201ENST00000407008 CECR2Q9BXF3 1484 aa13.19□□□□□ -0.3
NLK-201ENST00000407008 FAM9AQ8IZU1 332 aaPredicted RBP13.18□□□□□ -0.3
NLK-201ENST00000407008 MYT1Q01538 1121 aa13.16□□□□□ -0.3
NLK-201ENST00000407008 MROH2BQ7Z745 1585 aa13.12□□□□□ -0.31
NLK-201ENST00000407008 BAZ1BQ9UIG0 1483 aaKnown RBP13.07□□□□□ -0.32
NLK-201ENST00000407008 SMARCA2P51531 1590 aa13.05□□□□□ -0.32
NLK-201ENST00000407008 EHMT2Q96KQ7 1210 aa13.05□□□□□ -0.32
NLK-201ENST00000407008 SMARCA4P51532 1647 aa13.04□□□□□ -0.32
NLK-201ENST00000407008 TOP2AP11388 1531 aaKnown RBP13□□□□□ -0.33
NLK-201ENST00000407008 WIZO95785 1651 aa12.97□□□□□ -0.33
NLK-201ENST00000407008 APLP2Q06481 763 aa12.97□□□□□ -0.33
NLK-201ENST00000407008 UBTFP17480 764 aaKnown RBP12.96□□□□□ -0.33
NLK-201ENST00000407008 ATAD2BQ9ULI0 1458 aa12.9□□□□□ -0.34
NLK-201ENST00000407008 BICRAQ9NZM4 1560 aa12.9□□□□□ -0.34
NLK-201ENST00000407008 UNC13AQ9UPW8 1703 aa12.88□□□□□ -0.35
NLK-201ENST00000407008 CCDC88BA6NC98 1476 aa12.87□□□□□ -0.35
NLK-201ENST00000407008 LOC105371045A0A1W2PR82 267 aa12.85□□□□□ -0.35
NLK-201ENST00000407008 EEA1Q15075 1411 aa12.81□□□□□ -0.36
NLK-201ENST00000407008 WRNQ14191 1432 aaPredicted RBP eCLIP12.8□□□□□ -0.36
NLK-201ENST00000407008 EIF4G1Q04637 1599 aaKnown RBP12.8□□□□□ -0.36
NLK-201ENST00000407008 CSRNP3Q8WYN3 585 aa12.79□□□□□ -0.36
NLK-201ENST00000407008 NCAPD3P42695 1498 aa12.77□□□□□ -0.36
NLK-201ENST00000407008 PCGF6Q9BYE7 350 aa12.72□□□□□ -0.37
NLK-201ENST00000407008 HMGXB3Q12766 1538 aa12.72□□□□□ -0.37
NLK-201ENST00000407008 PEG3Q9GZU2 1588 aa12.71□□□□□ -0.37
NLK-201ENST00000407008 RANGAP1P46060 587 aaPredicted RBP12.7□□□□□ -0.38
NLK-201ENST00000407008 TTBK1Q5TCY1 1321 aaPredicted RBP12.67□□□□□ -0.38
NLK-201ENST00000407008 TRIM26Q12899 539 aaPredicted RBP12.67□□□□□ -0.38
NLK-201ENST00000407008 CADPSQ9ULU8 1353 aa12.64□□□□□ -0.39
NLK-201ENST00000407008 ABCC8Q09428 1581 aa12.6□□□□□ -0.39
NLK-201ENST00000407008 KIF27Q86VH2 1401 aa12.6□□□□□ -0.39
NLK-201ENST00000407008 GOLGA3Q08378 1498 aa12.58□□□□□ -0.39
NLK-201ENST00000407008 PDS5BQ9NTI5 1447 aa12.58□□□□□ -0.4
NLK-201ENST00000407008 PRKCSHP14314 528 aaPredicted RBP12.57□□□□□ -0.4
NLK-201ENST00000407008 ZEB1P37275 1124 aaPredicted RBP12.57□□□□□ -0.4
NLK-201ENST00000407008 CEP164Q9UPV0 1460 aa12.57□□□□□ -0.4
NLK-201ENST00000407008 CC2D2AQ9P2K1 1620 aa12.56□□□□□ -0.4
NLK-201ENST00000407008 ATP1B4Q9UN42 357 aaPredicted RBP12.56□□□□□ -0.4
NLK-201ENST00000407008 TNIKQ9UKE5 1360 aa12.51□□□□□ -0.41
NLK-201ENST00000407008 CFTRP13569 1480 aa12.51□□□□□ -0.41
NLK-201ENST00000407008 SOGA1O94964 1423 aa12.48□□□□□ -0.41
NLK-201ENST00000407008 FANCD2Q9BXW9 1451 aa12.46□□□□□ -0.41
NLK-201ENST00000407008 ERCC6Q03468 1493 aa12.45□□□□□ -0.42
NLK-201ENST00000407008 PPARGC1BQ86YN6 1023 aaKnown RBP12.44□□□□□ -0.42
NLK-201ENST00000407008 CUX2O14529 1486 aa12.44□□□□□ -0.42
NLK-201ENST00000407008 CLIP1P30622 1438 aa12.44□□□□□ -0.42
NLK-201ENST00000407008 CEP162Q5TB80 1403 aa12.44□□□□□ -0.42
NLK-201ENST00000407008 CCER1Q8TC90 406 aaPredicted RBP12.41□□□□□ -0.42
NLK-201ENST00000407008 CARMIL1Q5VZK9 1371 aa12.36□□□□□ -0.43
NLK-201ENST00000407008 TOP2BQ02880 1626 aa12.36□□□□□ -0.43
NLK-201ENST00000407008 LAMC3Q9Y6N6 1575 aa12.35□□□□□ -0.43
NLK-201ENST00000407008 SYNJ1O43426 1573 aa12.34□□□□□ -0.43
NLK-201ENST00000407008 FBLN2P98095 1184 aa12.33□□□□□ -0.44
NLK-201ENST00000407008 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.32□□□□□ -0.44
NLK-201ENST00000407008 HNRNPUL2Q1KMD3 747 aaKnown RBP12.32□□□□□ -0.44
NLK-201ENST00000407008 FGD5Q6ZNL6 1462 aa12.32□□□□□ -0.44
NLK-201ENST00000407008 HRCP23327 699 aa12.31□□□□□ -0.44
NLK-201ENST00000407008 RAPGEF2Q9Y4G8 1499 aa12.28□□□□□ -0.44
NLK-201ENST00000407008 CHMP7Q8WUX9 453 aaPredicted RBP12.27□□□□□ -0.44
NLK-201ENST00000407008 CUX1P39880 1505 aa12.27□□□□□ -0.45
NLK-201ENST00000407008 P3H3Q8IVL6 736 aa12.26□□□□□ -0.45
NLK-201ENST00000407008 RUSC2Q8N2Y8 1516 aa12.26□□□□□ -0.45
NLK-201ENST00000407008 KIF21BO75037 1637 aa12.26□□□□□ -0.45
NLK-201ENST00000407008 DNMBPQ6XZF7 1577 aa12.26□□□□□ -0.45
NLK-201ENST00000407008 FHAD1B1AJZ9 1412 aa12.24□□□□□ -0.45
NLK-201ENST00000407008 NESP48681 1621 aa12.24□□□□□ -0.45
NLK-201ENST00000407008 CDK11AQ9UQ88 783 aaPredicted RBP12.24□□□□□ -0.45
NLK-201ENST00000407008 BIVM-ERCC5R4GMW8 1640 aa12.24□□□□□ -0.45
NLK-201ENST00000407008 VPS8Q8N3P4 1428 aa12.23□□□□□ -0.45
NLK-201ENST00000407008 ERICH3Q5RHP9 1530 aa12.23□□□□□ -0.45
NLK-201ENST00000407008 TOPBP1Q92547 1522 aa12.23□□□□□ -0.45
NLK-201ENST00000407008 TDRD9Q8NDG6 1382 aaKnown RBP12.23□□□□□ -0.45
NLK-201ENST00000407008 MRC2Q9UBG0 1479 aa12.21□□□□□ -0.45
NLK-201ENST00000407008 ERICH6Q7L0X2 663 aa12.21□□□□□ -0.45
NLK-201ENST00000407008 SCAF1Q9H7N4 1312 aaKnown RBP12.21□□□□□ -0.45
NLK-201ENST00000407008 BCL11AQ9H165 835 aa12.21□□□□□ -0.46
NLK-201ENST00000407008 SLC24A1O60721 1099 aa12.2□□□□□ -0.46
NLK-201ENST00000407008 ITGAEP38570 1179 aa12.19□□□□□ -0.46
NLK-201ENST00000407008 IGF1RP08069 1367 aa12.19□□□□□ -0.46
NLK-201ENST00000407008 FAM50AQ14320 339 aaKnown RBP12.18□□□□□ -0.46
NLK-201ENST00000407008 GAPVD1Q14C86 1478 aa12.18□□□□□ -0.46
NLK-201ENST00000407008 POLA1P09884 1462 aaPredicted RBP12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms