RNA–Protein interactions for RNA: ENST00000397644.2

LINC00887-201, long intergenic non-protein coding RNA 887, humanhuman

TSL 5

Gene LINC00887, Length 416 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00887-201ENST00000397644 AEBP2Q6ZN18 517 aaPredicted RBP21.54■■□□□ 1.04
LINC00887-201ENST00000397644 CHIC1Q5VXU3 224 aa20.58■□□□□ 0.89
LINC00887-201ENST00000397644 SENP3Q9H4L4 574 aaPredicted RBP18.3■□□□□ 0.52
LINC00887-201ENST00000397644 PHF23Q9BUL5 403 aaPredicted RBP18.13■□□□□ 0.49
LINC00887-201ENST00000397644 NISCHQ9Y2I1 1504 aa17.55■□□□□ 0.4
LINC00887-201ENST00000397644 FOXD1Q16676 465 aa17.08■□□□□ 0.32
LINC00887-201ENST00000397644 PLPPR3Q6T4P5 718 aa16.51■□□□□ 0.23
LINC00887-201ENST00000397644 PPP6R1Q9UPN7 881 aa16.12■□□□□ 0.17
LINC00887-201ENST00000397644 ADRA2BP18089 450 aa16.08■□□□□ 0.16
LINC00887-201ENST00000397644 PIAS4Q8N2W9 510 aaPredicted RBP15.99■□□□□ 0.15
LINC00887-201ENST00000397644 CCDC180Q9P1Z9 1646 aa15.9■□□□□ 0.14
LINC00887-201ENST00000397644 MSH5O43196 834 aa15.87■□□□□ 0.13
LINC00887-201ENST00000397644 ABCC9O60706 1549 aa15.58■□□□□ 0.08
LINC00887-201ENST00000397644 POTEDQ86YR6 584 aa15.26■□□□□ 0.03
LINC00887-201ENST00000397644 RB1CC1Q8TDY2 1594 aa14.95□□□□□ -0.02
LINC00887-201ENST00000397644 UNC13AQ9UPW8 1703 aa14.86□□□□□ -0.03
LINC00887-201ENST00000397644 NACADO15069 1562 aa14.83□□□□□ -0.04
LINC00887-201ENST00000397644 DCAF8L2P0C7V8 631 aa14.81□□□□□ -0.04
LINC00887-201ENST00000397644 MAPK8IP2Q13387 824 aaPredicted RBP14.73□□□□□ -0.05
LINC00887-201ENST00000397644 SCAF1Q9H7N4 1312 aaKnown RBP14.66□□□□□ -0.06
LINC00887-201ENST00000397644 ZCCHC6Q5VYS8 1495 aaKnown RBP14.63□□□□□ -0.07
LINC00887-201ENST00000397644 MYO15BQ96JP2 1530 aa14.6□□□□□ -0.07
LINC00887-201ENST00000397644 DMRT2Q9Y5R5 561 aa14.54□□□□□ -0.08
LINC00887-201ENST00000397644 PPP4R3CPQ6ZMV5 832 aa14.51□□□□□ -0.09
LINC00887-201ENST00000397644 BICRAQ9NZM4 1560 aa14.5□□□□□ -0.09
LINC00887-201ENST00000397644 DCAF1Q9Y4B6 1507 aa14.49□□□□□ -0.09
LINC00887-201ENST00000397644 SCRIBQ14160 1630 aa14.48□□□□□ -0.09
LINC00887-201ENST00000397644 PABPN1Q86U42 306 aaKnown RBP eCLIP14.37□□□□□ -0.11
LINC00887-201ENST00000397644 SHROOM4Q9ULL8 1493 aa14.27□□□□□ -0.12
LINC00887-201ENST00000397644 DNAJC5BQ9UF47 199 aa14.26□□□□□ -0.13
LINC00887-201ENST00000397644 CNKSR2Q8WXI2 1034 aa14.19□□□□□ -0.14
LINC00887-201ENST00000397644 CC2D2AQ9P2K1 1620 aa14.16□□□□□ -0.14
LINC00887-201ENST00000397644 EIF4G1Q04637 1599 aaKnown RBP14.13□□□□□ -0.15
LINC00887-201ENST00000397644 HOXD11P31277 338 aaPredicted RBP14.07□□□□□ -0.16
LINC00887-201ENST00000397644 RNF216Q9NWF9 866 aaPredicted RBP14.01□□□□□ -0.17
LINC00887-201ENST00000397644 CECR2Q9BXF3 1484 aa13.99□□□□□ -0.17
LINC00887-201ENST00000397644 DCAF8L1A6NGE4 600 aa13.98□□□□□ -0.17
LINC00887-201ENST00000397644 NCBP3Q53F19 620 aaKnown RBP13.97□□□□□ -0.17
LINC00887-201ENST00000397644 NPM3O75607 178 aaKnown RBP13.81□□□□□ -0.2
LINC00887-201ENST00000397644 SMARCA4P51532 1647 aa13.79□□□□□ -0.2
LINC00887-201ENST00000397644 KCNA4P22459 653 aa13.7□□□□□ -0.22
LINC00887-201ENST00000397644 BAZ1AQ9NRL2 1556 aaPredicted RBP13.67□□□□□ -0.22
LINC00887-201ENST00000397644 SMARCA2P51531 1590 aa13.66□□□□□ -0.22
LINC00887-201ENST00000397644 HMGXB3Q12766 1538 aa13.64□□□□□ -0.23
LINC00887-201ENST00000397644 SUPT5HO00267 1087 aaKnown RBP13.61□□□□□ -0.23
LINC00887-201ENST00000397644 ATAD2BQ9ULI0 1458 aa13.6□□□□□ -0.23
LINC00887-201ENST00000397644 RNF39Q9H2S5 420 aa13.59□□□□□ -0.23
LINC00887-201ENST00000397644 PEG3Q9GZU2 1588 aa13.58□□□□□ -0.24
LINC00887-201ENST00000397644 CACNB1Q02641 598 aaPredicted RBP13.56□□□□□ -0.24
LINC00887-201ENST00000397644 NCAPD3P42695 1498 aa13.55□□□□□ -0.24
LINC00887-201ENST00000397644 BAZ1BQ9UIG0 1483 aaKnown RBP13.55□□□□□ -0.24
LINC00887-201ENST00000397644 MROH2BQ7Z745 1585 aa13.54□□□□□ -0.24
LINC00887-201ENST00000397644 WIZO95785 1651 aa13.51□□□□□ -0.25
LINC00887-201ENST00000397644 RSF1Q96T23 1441 aaPredicted RBP13.5□□□□□ -0.25
LINC00887-201ENST00000397644 KIF21AQ7Z4S6 1674 aa13.48□□□□□ -0.25
LINC00887-201ENST00000397644 ERCC6Q03468 1493 aa13.46□□□□□ -0.25
LINC00887-201ENST00000397644 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.43□□□□□ -0.26
LINC00887-201ENST00000397644 NESP48681 1621 aa13.42□□□□□ -0.26
LINC00887-201ENST00000397644 THOC2Q8NI27 1593 aaKnown RBP13.41□□□□□ -0.26
LINC00887-201ENST00000397644 LAMC3Q9Y6N6 1575 aa13.41□□□□□ -0.26
LINC00887-201ENST00000397644 C1QBPQ07021 282 aaKnown RBP13.38□□□□□ -0.27
LINC00887-201ENST00000397644 PRDM2Q13029 1718 aa13.38□□□□□ -0.27
LINC00887-201ENST00000397644 CUX2O14529 1486 aa13.35□□□□□ -0.27
LINC00887-201ENST00000397644 TOP2AP11388 1531 aaKnown RBP13.29□□□□□ -0.28
LINC00887-201ENST00000397644 EHMT2Q96KQ7 1210 aa13.26□□□□□ -0.29
LINC00887-201ENST00000397644 PDS5BQ9NTI5 1447 aa13.18□□□□□ -0.3
LINC00887-201ENST00000397644 U3KPZ7 1027 aaPredicted RBP13.16□□□□□ -0.3
LINC00887-201ENST00000397644 WDR62O43379 1518 aa13.16□□□□□ -0.3
LINC00887-201ENST00000397644 MRC2Q9UBG0 1479 aa13.16□□□□□ -0.3
LINC00887-201ENST00000397644 SLC4A2P04920 1241 aa13.15□□□□□ -0.3
LINC00887-201ENST00000397644 CEP164Q9UPV0 1460 aa13.15□□□□□ -0.3
LINC00887-201ENST00000397644 CADPSQ9ULU8 1353 aa13.14□□□□□ -0.31
LINC00887-201ENST00000397644 CCDC88BA6NC98 1476 aa13.14□□□□□ -0.31
LINC00887-201ENST00000397644 FANCD2Q9BXW9 1451 aa13.1□□□□□ -0.31
LINC00887-201ENST00000397644 CFTRP13569 1480 aa13.07□□□□□ -0.32
LINC00887-201ENST00000397644 URB2Q14146 1524 aaKnown RBP13.01□□□□□ -0.33
LINC00887-201ENST00000397644 DNAJC5Q9H3Z4 198 aa12.96□□□□□ -0.33
LINC00887-201ENST00000397644 SLC4A1APQ9BWU0 796 aaKnown RBP12.95□□□□□ -0.34
LINC00887-201ENST00000397644 SPINK5Q9NQ38 1064 aaPredicted RBP12.95□□□□□ -0.34
LINC00887-201ENST00000397644 DNMBPQ6XZF7 1577 aa12.93□□□□□ -0.34
LINC00887-201ENST00000397644 EIF4G3O43432 1585 aaKnown RBP12.91□□□□□ -0.34
LINC00887-201ENST00000397644 CAPN15O75808 1086 aa12.9□□□□□ -0.34
LINC00887-201ENST00000397644 TOPBP1Q92547 1522 aa12.89□□□□□ -0.35
LINC00887-201ENST00000397644 CHD1O14646 1710 aa12.88□□□□□ -0.35
LINC00887-201ENST00000397644 CSRNP3Q8WYN3 585 aa12.84□□□□□ -0.35
LINC00887-201ENST00000397644 TARBP1Q13395 1621 aaKnown RBP12.84□□□□□ -0.35
LINC00887-201ENST00000397644 TRIM41Q8WV44 630 aa12.83□□□□□ -0.36
LINC00887-201ENST00000397644 WDR97A6NE52 1622 aa12.83□□□□□ -0.36
LINC00887-201ENST00000397644 IFT140Q96RY7 1462 aa12.82□□□□□ -0.36
LINC00887-201ENST00000397644 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.81□□□□□ -0.36
LINC00887-201ENST00000397644 HNRNPUL2Q1KMD3 747 aaKnown RBP12.81□□□□□ -0.36
LINC00887-201ENST00000397644 ZNF608Q9ULD9 1512 aaPredicted RBP12.81□□□□□ -0.36
LINC00887-201ENST00000397644 ABCC8Q09428 1581 aa12.81□□□□□ -0.36
LINC00887-201ENST00000397644 PBRM1Q86U86 1689 aa12.8□□□□□ -0.36
LINC00887-201ENST00000397644 DSG3P32926 999 aa12.78□□□□□ -0.36
LINC00887-201ENST00000397644 POLA1P09884 1462 aaPredicted RBP12.77□□□□□ -0.37
LINC00887-201ENST00000397644 TRHP20396 242 aaPredicted RBP12.75□□□□□ -0.37
LINC00887-201ENST00000397644 CUX1P39880 1505 aa12.75□□□□□ -0.37
LINC00887-201ENST00000397644 APLP2Q06481 763 aa12.75□□□□□ -0.37
LINC00887-201ENST00000397644 SAMD1Q6SPF0 538 aaPredicted RBP12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 85 ms