RNA–Protein interactions for RNA: ENST00000397606.7

PTPRD-204, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

TSL 1 (best) BASIC

Gene PTPRD, Length 5,038 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-204ENST00000397606 NISCHQ9Y2I1 1504 aa16.56■□□□□ 0.24
PTPRD-204ENST00000397606 DCAF8L2P0C7V8 631 aa15.33■□□□□ 0.04
PTPRD-204ENST00000397606 SHROOM4Q9ULL8 1493 aa14.47□□□□□ -0.09
PTPRD-204ENST00000397606 SUPT5HO00267 1087 aaKnown RBP14.27□□□□□ -0.12
PTPRD-204ENST00000397606 ABCC9O60706 1549 aa14.15□□□□□ -0.14
PTPRD-204ENST00000397606 CCDC180Q9P1Z9 1646 aa14.1□□□□□ -0.15
PTPRD-204ENST00000397606 ZCCHC6Q5VYS8 1495 aaKnown RBP13.77□□□□□ -0.2
PTPRD-204ENST00000397606 PABPN1Q86U42 306 aaKnown RBP eCLIP13.65□□□□□ -0.22
PTPRD-204ENST00000397606 RB1CC1Q8TDY2 1594 aa13.53□□□□□ -0.24
PTPRD-204ENST00000397606 NACADO15069 1562 aa13.5□□□□□ -0.25
PTPRD-204ENST00000397606 SCRIBQ14160 1630 aa13.47□□□□□ -0.25
PTPRD-204ENST00000397606 DCAF1Q9Y4B6 1507 aa13.43□□□□□ -0.26
PTPRD-204ENST00000397606 TRIM41Q8WV44 630 aa13.39□□□□□ -0.27
PTPRD-204ENST00000397606 EHMT2Q96KQ7 1210 aa13.33□□□□□ -0.28
PTPRD-204ENST00000397606 FAM9AQ8IZU1 332 aaPredicted RBP13.31□□□□□ -0.28
PTPRD-204ENST00000397606 MYO15BQ96JP2 1530 aa13.24□□□□□ -0.29
PTPRD-204ENST00000397606 APLP2Q06481 763 aa13.13□□□□□ -0.31
PTPRD-204ENST00000397606 CHIC1Q5VXU3 224 aa13.07□□□□□ -0.32
PTPRD-204ENST00000397606 UBTFP17480 764 aaKnown RBP13.06□□□□□ -0.32
PTPRD-204ENST00000397606 RANGAP1P46060 587 aaPredicted RBP12.99□□□□□ -0.33
PTPRD-204ENST00000397606 RSF1Q96T23 1441 aaPredicted RBP12.98□□□□□ -0.33
PTPRD-204ENST00000397606 BAZ1AQ9NRL2 1556 aaPredicted RBP12.96□□□□□ -0.34
PTPRD-204ENST00000397606 CECR2Q9BXF3 1484 aa12.9□□□□□ -0.34
PTPRD-204ENST00000397606 BAZ1BQ9UIG0 1483 aaKnown RBP12.88□□□□□ -0.35
PTPRD-204ENST00000397606 ATP1B4Q9UN42 357 aaPredicted RBP12.86□□□□□ -0.35
PTPRD-204ENST00000397606 TTBK1Q5TCY1 1321 aaPredicted RBP12.78□□□□□ -0.36
PTPRD-204ENST00000397606 MROH2BQ7Z745 1585 aa12.76□□□□□ -0.37
PTPRD-204ENST00000397606 LOC105371045A0A1W2PR82 267 aa12.75□□□□□ -0.37
PTPRD-204ENST00000397606 SMARCA2P51531 1590 aa12.75□□□□□ -0.37
PTPRD-204ENST00000397606 CSRNP3Q8WYN3 585 aa12.67□□□□□ -0.38
PTPRD-204ENST00000397606 FBLN2P98095 1184 aa12.64□□□□□ -0.39
PTPRD-204ENST00000397606 SMARCA4P51532 1647 aa12.63□□□□□ -0.39
PTPRD-204ENST00000397606 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.62□□□□□ -0.39
PTPRD-204ENST00000397606 HNRNPUL2Q1KMD3 747 aaKnown RBP12.62□□□□□ -0.39
PTPRD-204ENST00000397606 PCGF6Q9BYE7 350 aa12.62□□□□□ -0.39
PTPRD-204ENST00000397606 ATAD2BQ9ULI0 1458 aa12.62□□□□□ -0.39
PTPRD-204ENST00000397606 TOP2AP11388 1531 aaKnown RBP12.58□□□□□ -0.4
PTPRD-204ENST00000397606 WRNQ14191 1432 aaPredicted RBP eCLIP12.57□□□□□ -0.4
PTPRD-204ENST00000397606 WIZO95785 1651 aa12.57□□□□□ -0.4
PTPRD-204ENST00000397606 CCDC88BA6NC98 1476 aa12.57□□□□□ -0.4
PTPRD-204ENST00000397606 ERCC6Q03468 1493 aa12.54□□□□□ -0.4
PTPRD-204ENST00000397606 PPARGC1BQ86YN6 1023 aaKnown RBP12.53□□□□□ -0.4
PTPRD-204ENST00000397606 EIF4G1Q04637 1599 aaKnown RBP12.51□□□□□ -0.41
PTPRD-204ENST00000397606 PDS5BQ9NTI5 1447 aa12.49□□□□□ -0.41
PTPRD-204ENST00000397606 CADPSQ9ULU8 1353 aa12.47□□□□□ -0.41
PTPRD-204ENST00000397606 NCAPD3P42695 1498 aa12.47□□□□□ -0.41
PTPRD-204ENST00000397606 EEA1Q15075 1411 aa12.47□□□□□ -0.41
PTPRD-204ENST00000397606 TRIM26Q12899 539 aaPredicted RBP12.46□□□□□ -0.42
PTPRD-204ENST00000397606 BICRAQ9NZM4 1560 aa12.45□□□□□ -0.42
PTPRD-204ENST00000397606 KIF27Q86VH2 1401 aa12.42□□□□□ -0.42
PTPRD-204ENST00000397606 CHMP7Q8WUX9 453 aaPredicted RBP12.42□□□□□ -0.42
PTPRD-204ENST00000397606 CCER1Q8TC90 406 aaPredicted RBP12.4□□□□□ -0.42
PTPRD-204ENST00000397606 P3H3Q8IVL6 736 aa12.39□□□□□ -0.43
PTPRD-204ENST00000397606 ITGAEP38570 1179 aa12.36□□□□□ -0.43
PTPRD-204ENST00000397606 MYT1LQ9UL68 1186 aa12.36□□□□□ -0.43
PTPRD-204ENST00000397606 ZEB1P37275 1124 aaPredicted RBP12.35□□□□□ -0.43
PTPRD-204ENST00000397606 CC2D2AQ9P2K1 1620 aa12.33□□□□□ -0.44
PTPRD-204ENST00000397606 CEP164Q9UPV0 1460 aa12.31□□□□□ -0.44
PTPRD-204ENST00000397606 HMGXB3Q12766 1538 aa12.3□□□□□ -0.44
PTPRD-204ENST00000397606 CDK11AQ9UQ88 783 aaPredicted RBP12.3□□□□□ -0.44
PTPRD-204ENST00000397606 GOLGA3Q08378 1498 aa12.3□□□□□ -0.44
PTPRD-204ENST00000397606 CUX2O14529 1486 aa12.3□□□□□ -0.44
PTPRD-204ENST00000397606 ABCC8Q09428 1581 aa12.29□□□□□ -0.44
PTPRD-204ENST00000397606 UNC13AQ9UPW8 1703 aa12.29□□□□□ -0.44
PTPRD-204ENST00000397606 FANCD2Q9BXW9 1451 aa12.28□□□□□ -0.44
PTPRD-204ENST00000397606 SOGA1O94964 1423 aa12.27□□□□□ -0.44
PTPRD-204ENST00000397606 FAM50AQ14320 339 aaKnown RBP12.27□□□□□ -0.45
PTPRD-204ENST00000397606 ARID3CA6NKF2 412 aa12.24□□□□□ -0.45
PTPRD-204ENST00000397606 CLIP1P30622 1438 aa12.24□□□□□ -0.45
PTPRD-204ENST00000397606 CARMIL1Q5VZK9 1371 aa12.23□□□□□ -0.45
PTPRD-204ENST00000397606 NPM1P06748 294 aaKnown RBP eCLIP12.22□□□□□ -0.45
PTPRD-204ENST00000397606 TDRD9Q8NDG6 1382 aaKnown RBP12.2□□□□□ -0.46
PTPRD-204ENST00000397606 TNIKQ9UKE5 1360 aa12.2□□□□□ -0.46
PTPRD-204ENST00000397606 CFTRP13569 1480 aa12.19□□□□□ -0.46
PTPRD-204ENST00000397606 CEP162Q5TB80 1403 aa12.16□□□□□ -0.46
PTPRD-204ENST00000397606 PEG3Q9GZU2 1588 aa12.15□□□□□ -0.46
PTPRD-204ENST00000397606 DNAJC5BQ9UF47 199 aa12.14□□□□□ -0.47
PTPRD-204ENST00000397606 ZNF777Q9ULD5 760 aaPredicted RBP12.1□□□□□ -0.47
PTPRD-204ENST00000397606 MTUS2Q5JR59 1369 aa12.09□□□□□ -0.47
PTPRD-204ENST00000397606 NESP48681 1621 aa12.09□□□□□ -0.47
PTPRD-204ENST00000397606 FGD5Q6ZNL6 1462 aa12.08□□□□□ -0.48
PTPRD-204ENST00000397606 TRIM52Q96A61 297 aa12.08□□□□□ -0.48
PTPRD-204ENST00000397606 PLEKHD1A6NEE1 506 aa12.05□□□□□ -0.48
PTPRD-204ENST00000397606 RAPGEF2Q9Y4G8 1499 aa12.05□□□□□ -0.48
PTPRD-204ENST00000397606 MRC2Q9UBG0 1479 aa12.03□□□□□ -0.48
PTPRD-204ENST00000397606 FHAD1B1AJZ9 1412 aa12.03□□□□□ -0.48
PTPRD-204ENST00000397606 LAMC3Q9Y6N6 1575 aa12.03□□□□□ -0.48
PTPRD-204ENST00000397606 CARMIL2Q6F5E8 1435 aa12.01□□□□□ -0.49
PTPRD-204ENST00000397606 GAPVD1Q14C86 1478 aa12□□□□□ -0.49
PTPRD-204ENST00000397606 RAD54L2Q9Y4B4 1467 aa12□□□□□ -0.49
PTPRD-204ENST00000397606 TOPBP1Q92547 1522 aa11.97□□□□□ -0.49
PTPRD-204ENST00000397606 IGF1RP08069 1367 aa11.97□□□□□ -0.49
PTPRD-204ENST00000397606 RUSC2Q8N2Y8 1516 aa11.96□□□□□ -0.49
PTPRD-204ENST00000397606 KCNH8Q96L42 1107 aa11.96□□□□□ -0.49
PTPRD-204ENST00000397606 HRCP23327 699 aa11.96□□□□□ -0.5
PTPRD-204ENST00000397606 TSPY4P0CV99 314 aa11.95□□□□□ -0.5
PTPRD-204ENST00000397606 TSPY10P0CW01 314 aa11.95□□□□□ -0.5
PTPRD-204ENST00000397606 IFT140Q96RY7 1462 aa11.94□□□□□ -0.5
PTPRD-204ENST00000397606 SYNJ1O43426 1573 aa11.93□□□□□ -0.5
PTPRD-204ENST00000397606 DNMBPQ6XZF7 1577 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms