RNA–Protein interactions for RNA: ENST00000390442.3

TRAV12-3-201, Transcript of T cell receptor alpha variable 12-3, humanhuman

APPRIS P1 BASIC

Gene TRAV12-3, Length 399 nt, Biotype TR V gene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV12-3-201ENST00000390442 CHIC1Q5VXU3 224 aa18.06■□□□□ 0.48
TRAV12-3-201ENST00000390442 AEBP2Q6ZN18 517 aaPredicted RBP18.02■□□□□ 0.48
TRAV12-3-201ENST00000390442 NISCHQ9Y2I1 1504 aa17.29■□□□□ 0.36
TRAV12-3-201ENST00000390442 PHF23Q9BUL5 403 aaPredicted RBP16.04■□□□□ 0.16
TRAV12-3-201ENST00000390442 ABCC9O60706 1549 aa15.57■□□□□ 0.08
TRAV12-3-201ENST00000390442 CCDC180Q9P1Z9 1646 aa15.35■□□□□ 0.05
TRAV12-3-201ENST00000390442 SENP3Q9H4L4 574 aaPredicted RBP15.04■□□□□ -0
TRAV12-3-201ENST00000390442 PLPPR3Q6T4P5 718 aa14.89□□□□□ -0.03
TRAV12-3-201ENST00000390442 DNAJC5BQ9UF47 199 aa14.76□□□□□ -0.05
TRAV12-3-201ENST00000390442 RB1CC1Q8TDY2 1594 aa14.71□□□□□ -0.05
TRAV12-3-201ENST00000390442 NACADO15069 1562 aa14.53□□□□□ -0.08
TRAV12-3-201ENST00000390442 PABPN1Q86U42 306 aaKnown RBP eCLIP14.43□□□□□ -0.1
TRAV12-3-201ENST00000390442 DCAF8L2P0C7V8 631 aa14.42□□□□□ -0.1
TRAV12-3-201ENST00000390442 ZCCHC6Q5VYS8 1495 aaKnown RBP14.41□□□□□ -0.1
TRAV12-3-201ENST00000390442 MYO15BQ96JP2 1530 aa14.39□□□□□ -0.11
TRAV12-3-201ENST00000390442 UNC13AQ9UPW8 1703 aa14.38□□□□□ -0.11
TRAV12-3-201ENST00000390442 DCAF1Q9Y4B6 1507 aa14.32□□□□□ -0.12
TRAV12-3-201ENST00000390442 BICRAQ9NZM4 1560 aa14.26□□□□□ -0.13
TRAV12-3-201ENST00000390442 ADRA2BP18089 450 aa14.14□□□□□ -0.15
TRAV12-3-201ENST00000390442 SHROOM4Q9ULL8 1493 aa14.06□□□□□ -0.16
TRAV12-3-201ENST00000390442 CC2D2AQ9P2K1 1620 aa14.05□□□□□ -0.16
TRAV12-3-201ENST00000390442 CECR2Q9BXF3 1484 aa14.05□□□□□ -0.16
TRAV12-3-201ENST00000390442 FOXD1Q16676 465 aa14.01□□□□□ -0.17
TRAV12-3-201ENST00000390442 PPP6R1Q9UPN7 881 aa14.01□□□□□ -0.17
TRAV12-3-201ENST00000390442 SCRIBQ14160 1630 aa13.97□□□□□ -0.17
TRAV12-3-201ENST00000390442 EIF4G1Q04637 1599 aaKnown RBP13.96□□□□□ -0.18
TRAV12-3-201ENST00000390442 EHMT2Q96KQ7 1210 aa13.83□□□□□ -0.2
TRAV12-3-201ENST00000390442 DNAJC5Q9H3Z4 198 aa13.76□□□□□ -0.21
TRAV12-3-201ENST00000390442 KCNA4P22459 653 aa13.7□□□□□ -0.22
TRAV12-3-201ENST00000390442 CUX2O14529 1486 aa13.52□□□□□ -0.25
TRAV12-3-201ENST00000390442 ERCC6Q03468 1493 aa13.48□□□□□ -0.25
TRAV12-3-201ENST00000390442 SMARCA4P51532 1647 aa13.41□□□□□ -0.26
TRAV12-3-201ENST00000390442 NCAPD3P42695 1498 aa13.39□□□□□ -0.27
TRAV12-3-201ENST00000390442 PIAS4Q8N2W9 510 aaPredicted RBP13.35□□□□□ -0.27
TRAV12-3-201ENST00000390442 BAZ1AQ9NRL2 1556 aaPredicted RBP13.35□□□□□ -0.27
TRAV12-3-201ENST00000390442 ATAD2BQ9ULI0 1458 aa13.35□□□□□ -0.27
TRAV12-3-201ENST00000390442 MROH2BQ7Z745 1585 aa13.34□□□□□ -0.27
TRAV12-3-201ENST00000390442 PEG3Q9GZU2 1588 aa13.32□□□□□ -0.28
TRAV12-3-201ENST00000390442 HMGXB3Q12766 1538 aa13.3□□□□□ -0.28
TRAV12-3-201ENST00000390442 SMARCA2P51531 1590 aa13.3□□□□□ -0.28
TRAV12-3-201ENST00000390442 NESP48681 1621 aa13.29□□□□□ -0.28
TRAV12-3-201ENST00000390442 CSRNP3Q8WYN3 585 aa13.29□□□□□ -0.28
TRAV12-3-201ENST00000390442 PPP4R3CPQ6ZMV5 832 aa13.28□□□□□ -0.28
TRAV12-3-201ENST00000390442 THOC2Q8NI27 1593 aaKnown RBP13.23□□□□□ -0.29
TRAV12-3-201ENST00000390442 SLC4A1APQ9BWU0 796 aaKnown RBP13.22□□□□□ -0.29
TRAV12-3-201ENST00000390442 BAZ1BQ9UIG0 1483 aaKnown RBP13.22□□□□□ -0.29
TRAV12-3-201ENST00000390442 WIZO95785 1651 aa13.18□□□□□ -0.3
TRAV12-3-201ENST00000390442 RSF1Q96T23 1441 aaPredicted RBP13.18□□□□□ -0.3
TRAV12-3-201ENST00000390442 LAMC3Q9Y6N6 1575 aa13.17□□□□□ -0.3
TRAV12-3-201ENST00000390442 KIF21AQ7Z4S6 1674 aa13.14□□□□□ -0.31
TRAV12-3-201ENST00000390442 TRIM41Q8WV44 630 aa13.11□□□□□ -0.31
TRAV12-3-201ENST00000390442 PDS5BQ9NTI5 1447 aa13.1□□□□□ -0.31
TRAV12-3-201ENST00000390442 TOP2AP11388 1531 aaKnown RBP13.02□□□□□ -0.33
TRAV12-3-201ENST00000390442 MRC2Q9UBG0 1479 aa13□□□□□ -0.33
TRAV12-3-201ENST00000390442 NCBP3Q53F19 620 aaKnown RBP12.99□□□□□ -0.33
TRAV12-3-201ENST00000390442 CADPSQ9ULU8 1353 aa12.98□□□□□ -0.33
TRAV12-3-201ENST00000390442 WDR62O43379 1518 aa12.98□□□□□ -0.33
TRAV12-3-201ENST00000390442 NPM3O75607 178 aaKnown RBP12.92□□□□□ -0.34
TRAV12-3-201ENST00000390442 CEP164Q9UPV0 1460 aa12.91□□□□□ -0.34
TRAV12-3-201ENST00000390442 SLC24A1O60721 1099 aa12.89□□□□□ -0.35
TRAV12-3-201ENST00000390442 CCDC88BA6NC98 1476 aa12.88□□□□□ -0.35
TRAV12-3-201ENST00000390442 CFTRP13569 1480 aa12.88□□□□□ -0.35
TRAV12-3-201ENST00000390442 FANCD2Q9BXW9 1451 aa12.86□□□□□ -0.35
TRAV12-3-201ENST00000390442 OSCARQ8IYS5 282 aa12.84□□□□□ -0.35
TRAV12-3-201ENST00000390442 URB2Q14146 1524 aaKnown RBP12.76□□□□□ -0.37
TRAV12-3-201ENST00000390442 PRDM2Q13029 1718 aa12.76□□□□□ -0.37
TRAV12-3-201ENST00000390442 RIMBP3CA6NJZ7 1639 aa12.73□□□□□ -0.37
TRAV12-3-201ENST00000390442 RIMBP3BA6NNM3 1639 aa12.73□□□□□ -0.37
TRAV12-3-201ENST00000390442 RIMBP3Q9UFD9 1639 aa12.73□□□□□ -0.37
TRAV12-3-201ENST00000390442 SUPT5HO00267 1087 aaKnown RBP12.7□□□□□ -0.38
TRAV12-3-201ENST00000390442 CNKSR2Q8WXI2 1034 aa12.69□□□□□ -0.38
TRAV12-3-201ENST00000390442 ARHGEF11O15085 1522 aa12.66□□□□□ -0.38
TRAV12-3-201ENST00000390442 ZNF608Q9ULD9 1512 aaPredicted RBP12.65□□□□□ -0.38
TRAV12-3-201ENST00000390442 IFT140Q96RY7 1462 aa12.65□□□□□ -0.38
TRAV12-3-201ENST00000390442 ZBTB22O15209 634 aa12.64□□□□□ -0.39
TRAV12-3-201ENST00000390442 SCAF1Q9H7N4 1312 aaKnown RBP12.63□□□□□ -0.39
TRAV12-3-201ENST00000390442 AMER1Q5JTC6 1135 aaPredicted RBP12.63□□□□□ -0.39
TRAV12-3-201ENST00000390442 MAPK8IP2Q13387 824 aaPredicted RBP12.6□□□□□ -0.39
TRAV12-3-201ENST00000390442 EIF4G3O43432 1585 aaKnown RBP12.6□□□□□ -0.39
TRAV12-3-201ENST00000390442 TOPBP1Q92547 1522 aa12.59□□□□□ -0.39
TRAV12-3-201ENST00000390442 CYB5RLQ6IPT4 315 aa12.57□□□□□ -0.4
TRAV12-3-201ENST00000390442 CHD1O14646 1710 aa12.56□□□□□ -0.4
TRAV12-3-201ENST00000390442 DNMBPQ6XZF7 1577 aa12.55□□□□□ -0.4
TRAV12-3-201ENST00000390442 MSH5O43196 834 aa12.54□□□□□ -0.4
TRAV12-3-201ENST00000390442 TRHP20396 242 aaPredicted RBP12.54□□□□□ -0.4
TRAV12-3-201ENST00000390442 ABCC8Q09428 1581 aa12.54□□□□□ -0.4
TRAV12-3-201ENST00000390442 RTN4Q9NQC3 1192 aaKnown RBP12.52□□□□□ -0.41
TRAV12-3-201ENST00000390442 ARAP1Q96P48 1450 aa12.52□□□□□ -0.41
TRAV12-3-201ENST00000390442 CUX1P39880 1505 aa12.51□□□□□ -0.41
TRAV12-3-201ENST00000390442 AQRO60306 1485 aaKnown RBP eCLIP12.49□□□□□ -0.41
TRAV12-3-201ENST00000390442 FBLN2P98095 1184 aa12.49□□□□□ -0.41
TRAV12-3-201ENST00000390442 TARBP1Q13395 1621 aaKnown RBP12.48□□□□□ -0.41
TRAV12-3-201ENST00000390442 POLA1P09884 1462 aaPredicted RBP12.48□□□□□ -0.41
TRAV12-3-201ENST00000390442 FGD5Q6ZNL6 1462 aa12.43□□□□□ -0.42
TRAV12-3-201ENST00000390442 RAD54L2Q9Y4B4 1467 aa12.42□□□□□ -0.42
TRAV12-3-201ENST00000390442 SNAPC4Q5SXM2 1469 aa12.39□□□□□ -0.43
TRAV12-3-201ENST00000390442 SYNJ1O43426 1573 aa12.39□□□□□ -0.43
TRAV12-3-201ENST00000390442 SOGA1O94964 1423 aa12.38□□□□□ -0.43
TRAV12-3-201ENST00000390442 WDR97A6NE52 1622 aa12.38□□□□□ -0.43
TRAV12-3-201ENST00000390442 BIVM-ERCC5R4GMW8 1640 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms