RNA–Protein interactions for RNA: ENST00000379996.7

CDKL5-202, Transcript of cyclin dependent kinase like 5, humanhuman

TSL 1 (best) BASIC

Gene CDKL5, Length 3,449 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5-202ENST00000379996 AEBP2Q6ZN18 517 aaPredicted RBP18.05■□□□□ 0.48
CDKL5-202ENST00000379996 NISCHQ9Y2I1 1504 aa17.98■□□□□ 0.47
CDKL5-202ENST00000379996 CHIC1Q5VXU3 224 aa17.95■□□□□ 0.46
CDKL5-202ENST00000379996 PHF23Q9BUL5 403 aaPredicted RBP16.18■□□□□ 0.18
CDKL5-202ENST00000379996 CCDC180Q9P1Z9 1646 aa15.99■□□□□ 0.15
CDKL5-202ENST00000379996 ZCCHC6Q5VYS8 1495 aaKnown RBP15.1■□□□□ 0.01
CDKL5-202ENST00000379996 DCAF1Q9Y4B6 1507 aa15.06■□□□□ 0
CDKL5-202ENST00000379996 MYO15BQ96JP2 1530 aa15.02■□□□□ -0
CDKL5-202ENST00000379996 ABCC9O60706 1549 aa14.94□□□□□ -0.02
CDKL5-202ENST00000379996 PLPPR3Q6T4P5 718 aa14.89□□□□□ -0.03
CDKL5-202ENST00000379996 NACADO15069 1562 aa14.87□□□□□ -0.03
CDKL5-202ENST00000379996 RB1CC1Q8TDY2 1594 aa14.75□□□□□ -0.05
CDKL5-202ENST00000379996 SENP3Q9H4L4 574 aaPredicted RBP14.74□□□□□ -0.05
CDKL5-202ENST00000379996 EHMT2Q96KQ7 1210 aa14.64□□□□□ -0.07
CDKL5-202ENST00000379996 ADRA2BP18089 450 aa14.57□□□□□ -0.08
CDKL5-202ENST00000379996 UNC13AQ9UPW8 1703 aa14.47□□□□□ -0.09
CDKL5-202ENST00000379996 DCAF8L2P0C7V8 631 aa14.41□□□□□ -0.1
CDKL5-202ENST00000379996 SCRIBQ14160 1630 aa14.37□□□□□ -0.11
CDKL5-202ENST00000379996 SHROOM4Q9ULL8 1493 aa14.35□□□□□ -0.11
CDKL5-202ENST00000379996 BICRAQ9NZM4 1560 aa14.3□□□□□ -0.12
CDKL5-202ENST00000379996 KCNA4P22459 653 aa14.27□□□□□ -0.12
CDKL5-202ENST00000379996 PPP6R1Q9UPN7 881 aa14.25□□□□□ -0.13
CDKL5-202ENST00000379996 FOXD1Q16676 465 aa13.94□□□□□ -0.18
CDKL5-202ENST00000379996 BAZ1AQ9NRL2 1556 aaPredicted RBP13.93□□□□□ -0.18
CDKL5-202ENST00000379996 PABPN1Q86U42 306 aaKnown RBP eCLIP13.91□□□□□ -0.18
CDKL5-202ENST00000379996 SMARCA4P51532 1647 aa13.9□□□□□ -0.18
CDKL5-202ENST00000379996 PEG3Q9GZU2 1588 aa13.88□□□□□ -0.19
CDKL5-202ENST00000379996 EIF4G1Q04637 1599 aaKnown RBP13.85□□□□□ -0.19
CDKL5-202ENST00000379996 CECR2Q9BXF3 1484 aa13.85□□□□□ -0.19
CDKL5-202ENST00000379996 MROH2BQ7Z745 1585 aa13.8□□□□□ -0.2
CDKL5-202ENST00000379996 RSF1Q96T23 1441 aaPredicted RBP13.77□□□□□ -0.2
CDKL5-202ENST00000379996 SMARCA2P51531 1590 aa13.74□□□□□ -0.21
CDKL5-202ENST00000379996 HMGXB3Q12766 1538 aa13.7□□□□□ -0.22
CDKL5-202ENST00000379996 CC2D2AQ9P2K1 1620 aa13.68□□□□□ -0.22
CDKL5-202ENST00000379996 WIZO95785 1651 aa13.68□□□□□ -0.22
CDKL5-202ENST00000379996 ATAD2BQ9ULI0 1458 aa13.68□□□□□ -0.22
CDKL5-202ENST00000379996 NCAPD3P42695 1498 aa13.67□□□□□ -0.22
CDKL5-202ENST00000379996 TOP2AP11388 1531 aaKnown RBP13.64□□□□□ -0.23
CDKL5-202ENST00000379996 CSRNP3Q8WYN3 585 aa13.6□□□□□ -0.23
CDKL5-202ENST00000379996 BAZ1BQ9UIG0 1483 aaKnown RBP13.55□□□□□ -0.24
CDKL5-202ENST00000379996 SLC4A1APQ9BWU0 796 aaKnown RBP13.54□□□□□ -0.24
CDKL5-202ENST00000379996 PIAS4Q8N2W9 510 aaPredicted RBP13.45□□□□□ -0.26
CDKL5-202ENST00000379996 PPP4R3CPQ6ZMV5 832 aa13.4□□□□□ -0.26
CDKL5-202ENST00000379996 CCDC88BA6NC98 1476 aa13.38□□□□□ -0.27
CDKL5-202ENST00000379996 SUPT5HO00267 1087 aaKnown RBP13.38□□□□□ -0.27
CDKL5-202ENST00000379996 PRDM2Q13029 1718 aa13.36□□□□□ -0.27
CDKL5-202ENST00000379996 DNAJC5BQ9UF47 199 aa13.33□□□□□ -0.28
CDKL5-202ENST00000379996 LAMC3Q9Y6N6 1575 aa13.28□□□□□ -0.28
CDKL5-202ENST00000379996 CFTRP13569 1480 aa13.27□□□□□ -0.29
CDKL5-202ENST00000379996 CADPSQ9ULU8 1353 aa13.2□□□□□ -0.3
CDKL5-202ENST00000379996 ZBTB22O15209 634 aa13.17□□□□□ -0.3
CDKL5-202ENST00000379996 NPM3O75607 178 aaKnown RBP13.14□□□□□ -0.31
CDKL5-202ENST00000379996 PDS5BQ9NTI5 1447 aa13.07□□□□□ -0.32
CDKL5-202ENST00000379996 NESP48681 1621 aa13.06□□□□□ -0.32
CDKL5-202ENST00000379996 KIF21AQ7Z4S6 1674 aa13.06□□□□□ -0.32
CDKL5-202ENST00000379996 BIVM-ERCC5R4GMW8 1640 aa13.05□□□□□ -0.32
CDKL5-202ENST00000379996 FANCD2Q9BXW9 1451 aa13.05□□□□□ -0.32
CDKL5-202ENST00000379996 ABCC8Q09428 1581 aa13.01□□□□□ -0.33
CDKL5-202ENST00000379996 CEP164Q9UPV0 1460 aa13.01□□□□□ -0.33
CDKL5-202ENST00000379996 TOP2BQ02880 1626 aa13.01□□□□□ -0.33
CDKL5-202ENST00000379996 DNMBPQ6XZF7 1577 aa12.99□□□□□ -0.33
CDKL5-202ENST00000379996 THOC2Q8NI27 1593 aaKnown RBP12.98□□□□□ -0.33
CDKL5-202ENST00000379996 WDR62O43379 1518 aa12.97□□□□□ -0.33
CDKL5-202ENST00000379996 WRNQ14191 1432 aaPredicted RBP eCLIP12.95□□□□□ -0.34
CDKL5-202ENST00000379996 SYNJ1O43426 1573 aa12.95□□□□□ -0.34
CDKL5-202ENST00000379996 MRC2Q9UBG0 1479 aa12.95□□□□□ -0.34
CDKL5-202ENST00000379996 CUX1P39880 1505 aa12.95□□□□□ -0.34
CDKL5-202ENST00000379996 NCBP3Q53F19 620 aaKnown RBP12.95□□□□□ -0.34
CDKL5-202ENST00000379996 URB2Q14146 1524 aaKnown RBP12.92□□□□□ -0.34
CDKL5-202ENST00000379996 TOPBP1Q92547 1522 aa12.91□□□□□ -0.34
CDKL5-202ENST00000379996 WDR97A6NE52 1622 aa12.88□□□□□ -0.35
CDKL5-202ENST00000379996 MAPK8IP2Q13387 824 aaPredicted RBP12.87□□□□□ -0.35
CDKL5-202ENST00000379996 ERCC6Q03468 1493 aa12.86□□□□□ -0.35
CDKL5-202ENST00000379996 TARBP1Q13395 1621 aaKnown RBP12.82□□□□□ -0.36
CDKL5-202ENST00000379996 FGD5Q6ZNL6 1462 aa12.81□□□□□ -0.36
CDKL5-202ENST00000379996 POLA1P09884 1462 aaPredicted RBP12.81□□□□□ -0.36
CDKL5-202ENST00000379996 RTN4Q9NQC3 1192 aaKnown RBP12.8□□□□□ -0.36
CDKL5-202ENST00000379996 ABCA10Q8WWZ4 1543 aa12.79□□□□□ -0.36
CDKL5-202ENST00000379996 CUX2O14529 1486 aa12.79□□□□□ -0.36
CDKL5-202ENST00000379996 IFT140Q96RY7 1462 aa12.77□□□□□ -0.37
CDKL5-202ENST00000379996 EEA1Q15075 1411 aa12.75□□□□□ -0.37
CDKL5-202ENST00000379996 ABCA5Q8WWZ7 1642 aa12.75□□□□□ -0.37
CDKL5-202ENST00000379996 TRIM41Q8WV44 630 aa12.73□□□□□ -0.37
CDKL5-202ENST00000379996 SOGA1O94964 1423 aa12.7□□□□□ -0.38
CDKL5-202ENST00000379996 ERICH3Q5RHP9 1530 aa12.67□□□□□ -0.38
CDKL5-202ENST00000379996 PBRM1Q86U86 1689 aa12.67□□□□□ -0.38
CDKL5-202ENST00000379996 RAD54L2Q9Y4B4 1467 aa12.66□□□□□ -0.38
CDKL5-202ENST00000379996 KIF27Q86VH2 1401 aa12.66□□□□□ -0.38
CDKL5-202ENST00000379996 CUL7Q14999 1698 aa12.65□□□□□ -0.38
CDKL5-202ENST00000379996 EIF4G3O43432 1585 aaKnown RBP12.65□□□□□ -0.38
CDKL5-202ENST00000379996 KIF21BO75037 1637 aa12.63□□□□□ -0.39
CDKL5-202ENST00000379996 CNKSR2Q8WXI2 1034 aa12.61□□□□□ -0.39
CDKL5-202ENST00000379996 GAPVD1Q14C86 1478 aa12.6□□□□□ -0.39
CDKL5-202ENST00000379996 SLC24A1O60721 1099 aa12.59□□□□□ -0.39
CDKL5-202ENST00000379996 GRIN2BQ13224 1484 aa12.58□□□□□ -0.4
CDKL5-202ENST00000379996 PRXQ9BXM0 1461 aa12.58□□□□□ -0.4
CDKL5-202ENST00000379996 RUSC2Q8N2Y8 1516 aa12.58□□□□□ -0.4
CDKL5-202ENST00000379996 HRCP23327 699 aa12.58□□□□□ -0.4
CDKL5-202ENST00000379996 ADAMTS12P58397 1594 aa12.57□□□□□ -0.4
CDKL5-202ENST00000379996 ZNF608Q9ULD9 1512 aaPredicted RBP12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms