RNA–Protein interactions for RNA: ENST00000379868.5

DDX58-201, Transcript of DExD/H-box helicase 58, humanhuman

TSL 5 BASIC

Gene DDX58, Length 4,089 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX58-201ENST00000379868 NISCHQ9Y2I1 1504 aa11.86□□□□□ -0.51
DDX58-201ENST00000379868 DCAF8L2P0C7V8 631 aa10.96□□□□□ -0.65
DDX58-201ENST00000379868 CCDC180Q9P1Z9 1646 aa10.6□□□□□ -0.71
DDX58-201ENST00000379868 ABCC9O60706 1549 aa10.32□□□□□ -0.76
DDX58-201ENST00000379868 SHROOM4Q9ULL8 1493 aa10.24□□□□□ -0.77
DDX58-201ENST00000379868 DCAF1Q9Y4B6 1507 aa10.19□□□□□ -0.78
DDX58-201ENST00000379868 ZCCHC6Q5VYS8 1495 aaKnown RBP10.18□□□□□ -0.78
DDX58-201ENST00000379868 MYO15BQ96JP2 1530 aa9.98□□□□□ -0.81
DDX58-201ENST00000379868 SUPT5HO00267 1087 aaKnown RBP9.96□□□□□ -0.82
DDX58-201ENST00000379868 PABPN1Q86U42 306 aaKnown RBP eCLIP9.95□□□□□ -0.82
DDX58-201ENST00000379868 RB1CC1Q8TDY2 1594 aa9.66□□□□□ -0.86
DDX58-201ENST00000379868 SCRIBQ14160 1630 aa9.62□□□□□ -0.87
DDX58-201ENST00000379868 AEBP2Q6ZN18 517 aaPredicted RBP9.6□□□□□ -0.87
DDX58-201ENST00000379868 EIF4G1Q04637 1599 aaKnown RBP9.59□□□□□ -0.87
DDX58-201ENST00000379868 NACADO15069 1562 aa9.59□□□□□ -0.87
DDX58-201ENST00000379868 UNC13AQ9UPW8 1703 aa9.59□□□□□ -0.87
DDX58-201ENST00000379868 EHMT2Q96KQ7 1210 aa9.41□□□□□ -0.9
DDX58-201ENST00000379868 PEG3Q9GZU2 1588 aa9.34□□□□□ -0.91
DDX58-201ENST00000379868 FAM9AQ8IZU1 332 aaPredicted RBP9.32□□□□□ -0.92
DDX58-201ENST00000379868 CHIC1Q5VXU3 224 aa9.29□□□□□ -0.92
DDX58-201ENST00000379868 BAZ1AQ9NRL2 1556 aaPredicted RBP9.29□□□□□ -0.92
DDX58-201ENST00000379868 TRIM41Q8WV44 630 aa9.27□□□□□ -0.93
DDX58-201ENST00000379868 CECR2Q9BXF3 1484 aa9.24□□□□□ -0.93
DDX58-201ENST00000379868 BICRAQ9NZM4 1560 aa9.24□□□□□ -0.93
DDX58-201ENST00000379868 RANGAP1P46060 587 aaPredicted RBP9.2□□□□□ -0.94
DDX58-201ENST00000379868 RSF1Q96T23 1441 aaPredicted RBP9.18□□□□□ -0.94
DDX58-201ENST00000379868 BAZ1BQ9UIG0 1483 aaKnown RBP9.16□□□□□ -0.94
DDX58-201ENST00000379868 DNAJC5BQ9UF47 199 aa9.15□□□□□ -0.94
DDX58-201ENST00000379868 SMARCA4P51532 1647 aa9.13□□□□□ -0.95
DDX58-201ENST00000379868 WIZO95785 1651 aa9.12□□□□□ -0.95
DDX58-201ENST00000379868 PRDM2Q13029 1718 aa9.11□□□□□ -0.95
DDX58-201ENST00000379868 MROH2BQ7Z745 1585 aa9.1□□□□□ -0.95
DDX58-201ENST00000379868 FBLN2P98095 1184 aa9.1□□□□□ -0.95
DDX58-201ENST00000379868 TTBK1Q5TCY1 1321 aaPredicted RBP9.08□□□□□ -0.96
DDX58-201ENST00000379868 TOP2AP11388 1531 aaKnown RBP9.08□□□□□ -0.96
DDX58-201ENST00000379868 UBTFP17480 764 aaKnown RBP9.07□□□□□ -0.96
DDX58-201ENST00000379868 ERCC6Q03468 1493 aa9.05□□□□□ -0.96
DDX58-201ENST00000379868 SMARCA2P51531 1590 aa9.05□□□□□ -0.96
DDX58-201ENST00000379868 ATP1B4Q9UN42 357 aaPredicted RBP9.04□□□□□ -0.96
DDX58-201ENST00000379868 ATAD2BQ9ULI0 1458 aa9.02□□□□□ -0.97
DDX58-201ENST00000379868 CC2D2AQ9P2K1 1620 aa8.96□□□□□ -0.98
DDX58-201ENST00000379868 APLP2Q06481 763 aa8.95□□□□□ -0.98
DDX58-201ENST00000379868 BIVM-ERCC5R4GMW8 1640 aa8.94□□□□□ -0.98
DDX58-201ENST00000379868 NCAPD3P42695 1498 aa8.91□□□□□ -0.98
DDX58-201ENST00000379868 PDS5BQ9NTI5 1447 aa8.91□□□□□ -0.98
DDX58-201ENST00000379868 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.9□□□□□ -0.98
DDX58-201ENST00000379868 HNRNPUL2Q1KMD3 747 aaKnown RBP8.9□□□□□ -0.98
DDX58-201ENST00000379868 CADPSQ9ULU8 1353 aa8.9□□□□□ -0.98
DDX58-201ENST00000379868 CCDC88BA6NC98 1476 aa8.9□□□□□ -0.99
DDX58-201ENST00000379868 CHMP7Q8WUX9 453 aaPredicted RBP8.86□□□□□ -0.99
DDX58-201ENST00000379868 LOC105371045A0A1W2PR82 267 aa8.86□□□□□ -0.99
DDX58-201ENST00000379868 HMGXB3Q12766 1538 aa8.85□□□□□ -0.99
DDX58-201ENST00000379868 WRNQ14191 1432 aaPredicted RBP eCLIP8.82□□□□□ -1
DDX58-201ENST00000379868 KIF21BO75037 1637 aa8.82□□□□□ -1
DDX58-201ENST00000379868 CSRNP3Q8WYN3 585 aa8.81□□□□□ -1
DDX58-201ENST00000379868 NESP48681 1621 aa8.81□□□□□ -1
DDX58-201ENST00000379868 P3H3Q8IVL6 736 aa8.8□□□□□ -1
DDX58-201ENST00000379868 ARID3CA6NKF2 412 aa8.78□□□□□ -1
DDX58-201ENST00000379868 FANCD2Q9BXW9 1451 aa8.78□□□□□ -1
DDX58-201ENST00000379868 CEP164Q9UPV0 1460 aa8.78□□□□□ -1
DDX58-201ENST00000379868 TOP2BQ02880 1626 aa8.77□□□□□ -1.01
DDX58-201ENST00000379868 TDRD9Q8NDG6 1382 aaKnown RBP8.76□□□□□ -1.01
DDX58-201ENST00000379868 PPARGC1BQ86YN6 1023 aaKnown RBP8.76□□□□□ -1.01
DDX58-201ENST00000379868 WDR97A6NE52 1622 aa8.75□□□□□ -1.01
DDX58-201ENST00000379868 SYNJ1O43426 1573 aa8.75□□□□□ -1.01
DDX58-201ENST00000379868 MYT1LQ9UL68 1186 aa8.73□□□□□ -1.01
DDX58-201ENST00000379868 SOGA1O94964 1423 aa8.73□□□□□ -1.01
DDX58-201ENST00000379868 ABCC8Q09428 1581 aa8.7□□□□□ -1.02
DDX58-201ENST00000379868 CUX2O14529 1486 aa8.7□□□□□ -1.02
DDX58-201ENST00000379868 KIF27Q86VH2 1401 aa8.68□□□□□ -1.02
DDX58-201ENST00000379868 NPM1P06748 294 aaKnown RBP eCLIP8.68□□□□□ -1.02
DDX58-201ENST00000379868 CFTRP13569 1480 aa8.67□□□□□ -1.02
DDX58-201ENST00000379868 ERICH3Q5RHP9 1530 aa8.63□□□□□ -1.03
DDX58-201ENST00000379868 ITGAEP38570 1179 aa8.63□□□□□ -1.03
DDX58-201ENST00000379868 RAD54L2Q9Y4B4 1467 aa8.62□□□□□ -1.03
DDX58-201ENST00000379868 MRC2Q9UBG0 1479 aa8.61□□□□□ -1.03
DDX58-201ENST00000379868 OSCARQ8IYS5 282 aa8.61□□□□□ -1.03
DDX58-201ENST00000379868 CARMIL1Q5VZK9 1371 aa8.61□□□□□ -1.03
DDX58-201ENST00000379868 EEA1Q15075 1411 aa8.6□□□□□ -1.03
DDX58-201ENST00000379868 AQRO60306 1485 aaKnown RBP eCLIP8.6□□□□□ -1.03
DDX58-201ENST00000379868 FGD5Q6ZNL6 1462 aa8.6□□□□□ -1.03
DDX58-201ENST00000379868 LAMC3Q9Y6N6 1575 aa8.59□□□□□ -1.03
DDX58-201ENST00000379868 TRHP20396 242 aaPredicted RBP8.58□□□□□ -1.04
DDX58-201ENST00000379868 CYB5RLQ6IPT4 315 aa8.56□□□□□ -1.04
DDX58-201ENST00000379868 KCNH8Q96L42 1107 aa8.55□□□□□ -1.04
DDX58-201ENST00000379868 LRRIQ1Q96JM4 1722 aa8.55□□□□□ -1.04
DDX58-201ENST00000379868 TOPBP1Q92547 1522 aa8.55□□□□□ -1.04
DDX58-201ENST00000379868 CDK11AQ9UQ88 783 aaPredicted RBP8.54□□□□□ -1.04
DDX58-201ENST00000379868 ZNF777Q9ULD5 760 aaPredicted RBP8.54□□□□□ -1.04
DDX58-201ENST00000379868 CUX1P39880 1505 aa8.53□□□□□ -1.04
DDX58-201ENST00000379868 GAPVD1Q14C86 1478 aa8.53□□□□□ -1.04
DDX58-201ENST00000379868 JPH4Q96JJ6 628 aa8.52□□□□□ -1.05
DDX58-201ENST00000379868 PRXQ9BXM0 1461 aa8.52□□□□□ -1.05
DDX58-201ENST00000379868 FAM50AQ14320 339 aaKnown RBP8.52□□□□□ -1.05
DDX58-201ENST00000379868 CFAP43Q8NDM7 1665 aa8.52□□□□□ -1.05
DDX58-201ENST00000379868 POLA1P09884 1462 aaPredicted RBP8.51□□□□□ -1.05
DDX58-201ENST00000379868 PCGF6Q9BYE7 350 aa8.51□□□□□ -1.05
DDX58-201ENST00000379868 IFT140Q96RY7 1462 aa8.5□□□□□ -1.05
DDX58-201ENST00000379868 HRCP23327 699 aa8.49□□□□□ -1.05
DDX58-201ENST00000379868 URB2Q14146 1524 aaKnown RBP8.49□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 629.9 ms