RNA–Protein interactions for RNA: ENST00000379340.9

POLR2J3-201, Transcript of RNA polymerase II subunit J3, humanhuman

TSL 1 (best)

Gene POLR2J3, Length 1,598 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
POLR2J3-201ENST00000379340 NISCHQ9Y2I1 1504 aa22.86■■□□□ 1.25
POLR2J3-201ENST00000379340 ABCC9O60706 1549 aa20.71■□□□□ 0.91
POLR2J3-201ENST00000379340 CCDC180Q9P1Z9 1646 aa20.15■□□□□ 0.82
POLR2J3-201ENST00000379340 DNAJC5BQ9UF47 199 aa19.91■□□□□ 0.78
POLR2J3-201ENST00000379340 RB1CC1Q8TDY2 1594 aa19.4■□□□□ 0.7
POLR2J3-201ENST00000379340 ZCCHC6Q5VYS8 1495 aaKnown RBP19.29■□□□□ 0.68
POLR2J3-201ENST00000379340 PABPN1Q86U42 306 aaKnown RBP eCLIP19.24■□□□□ 0.67
POLR2J3-201ENST00000379340 NACADO15069 1562 aa19.16■□□□□ 0.66
POLR2J3-201ENST00000379340 DCAF8L2P0C7V8 631 aa19.06■□□□□ 0.64
POLR2J3-201ENST00000379340 UNC13AQ9UPW8 1703 aa19.05■□□□□ 0.64
POLR2J3-201ENST00000379340 BICRAQ9NZM4 1560 aa18.97■□□□□ 0.63
POLR2J3-201ENST00000379340 DCAF1Q9Y4B6 1507 aa18.97■□□□□ 0.63
POLR2J3-201ENST00000379340 SHROOM4Q9ULL8 1493 aa18.78■□□□□ 0.6
POLR2J3-201ENST00000379340 MYO15BQ96JP2 1530 aa18.72■□□□□ 0.59
POLR2J3-201ENST00000379340 CECR2Q9BXF3 1484 aa18.66■□□□□ 0.58
POLR2J3-201ENST00000379340 CC2D2AQ9P2K1 1620 aa18.65■□□□□ 0.58
POLR2J3-201ENST00000379340 DNAJC5Q9H3Z4 198 aa18.5■□□□□ 0.55
POLR2J3-201ENST00000379340 EIF4G1Q04637 1599 aaKnown RBP18.49■□□□□ 0.55
POLR2J3-201ENST00000379340 SCRIBQ14160 1630 aa18.43■□□□□ 0.54
POLR2J3-201ENST00000379340 SUPT5HO00267 1087 aaKnown RBP18.26■□□□□ 0.51
POLR2J3-201ENST00000379340 CUX2O14529 1486 aa17.93■□□□□ 0.46
POLR2J3-201ENST00000379340 RSF1Q96T23 1441 aaPredicted RBP17.84■□□□□ 0.45
POLR2J3-201ENST00000379340 ERCC6Q03468 1493 aa17.84■□□□□ 0.45
POLR2J3-201ENST00000379340 NCAPD3P42695 1498 aa17.74■□□□□ 0.43
POLR2J3-201ENST00000379340 CHIC1Q5VXU3 224 aa17.72■□□□□ 0.43
POLR2J3-201ENST00000379340 NESP48681 1621 aa17.7■□□□□ 0.42
POLR2J3-201ENST00000379340 BAZ1AQ9NRL2 1556 aaPredicted RBP17.65■□□□□ 0.42
POLR2J3-201ENST00000379340 MROH2BQ7Z745 1585 aa17.64■□□□□ 0.41
POLR2J3-201ENST00000379340 ATAD2BQ9ULI0 1458 aa17.64■□□□□ 0.41
POLR2J3-201ENST00000379340 THOC2Q8NI27 1593 aaKnown RBP17.54■□□□□ 0.4
POLR2J3-201ENST00000379340 HMGXB3Q12766 1538 aa17.54■□□□□ 0.4
POLR2J3-201ENST00000379340 WIZO95785 1651 aa17.53■□□□□ 0.4
POLR2J3-201ENST00000379340 TRIM41Q8WV44 630 aa17.53■□□□□ 0.4
POLR2J3-201ENST00000379340 SMARCA4P51532 1647 aa17.51■□□□□ 0.39
POLR2J3-201ENST00000379340 SMARCA2P51531 1590 aa17.5■□□□□ 0.39
POLR2J3-201ENST00000379340 BAZ1BQ9UIG0 1483 aaKnown RBP17.42■□□□□ 0.38
POLR2J3-201ENST00000379340 TOP2AP11388 1531 aaKnown RBP17.41■□□□□ 0.38
POLR2J3-201ENST00000379340 KIF21AQ7Z4S6 1674 aa17.4■□□□□ 0.38
POLR2J3-201ENST00000379340 LAMC3Q9Y6N6 1575 aa17.37■□□□□ 0.37
POLR2J3-201ENST00000379340 PEG3Q9GZU2 1588 aa17.31■□□□□ 0.36
POLR2J3-201ENST00000379340 PDS5BQ9NTI5 1447 aa17.27■□□□□ 0.36
POLR2J3-201ENST00000379340 MRC2Q9UBG0 1479 aa17.2■□□□□ 0.34
POLR2J3-201ENST00000379340 CCDC88BA6NC98 1476 aa17.18■□□□□ 0.34
POLR2J3-201ENST00000379340 WDR62O43379 1518 aa17.18■□□□□ 0.34
POLR2J3-201ENST00000379340 CADPSQ9ULU8 1353 aa17.17■□□□□ 0.34
POLR2J3-201ENST00000379340 OSCARQ8IYS5 282 aa17.06■□□□□ 0.32
POLR2J3-201ENST00000379340 CEP164Q9UPV0 1460 aa17.03■□□□□ 0.32
POLR2J3-201ENST00000379340 FANCD2Q9BXW9 1451 aa17■□□□□ 0.31
POLR2J3-201ENST00000379340 LOC105371045A0A1W2PR82 267 aa16.98■□□□□ 0.31
POLR2J3-201ENST00000379340 URB2Q14146 1524 aaKnown RBP16.93■□□□□ 0.3
POLR2J3-201ENST00000379340 RIMBP3CA6NJZ7 1639 aa16.93■□□□□ 0.3
POLR2J3-201ENST00000379340 RIMBP3BA6NNM3 1639 aa16.93■□□□□ 0.3
POLR2J3-201ENST00000379340 RIMBP3Q9UFD9 1639 aa16.93■□□□□ 0.3
POLR2J3-201ENST00000379340 ABCC8Q09428 1581 aa16.92■□□□□ 0.3
POLR2J3-201ENST00000379340 CFTRP13569 1480 aa16.89■□□□□ 0.29
POLR2J3-201ENST00000379340 EEA1Q15075 1411 aa16.83■□□□□ 0.28
POLR2J3-201ENST00000379340 ARHGEF11O15085 1522 aa16.83■□□□□ 0.28
POLR2J3-201ENST00000379340 FAM9AQ8IZU1 332 aaPredicted RBP16.82■□□□□ 0.28
POLR2J3-201ENST00000379340 ZNF608Q9ULD9 1512 aaPredicted RBP16.82■□□□□ 0.28
POLR2J3-201ENST00000379340 WRNQ14191 1432 aaPredicted RBP eCLIP16.8■□□□□ 0.281e-6■■■■■ 58.5
POLR2J3-201ENST00000379340 CYB5RLQ6IPT4 315 aa16.75■□□□□ 0.27
POLR2J3-201ENST00000379340 SYNJ1O43426 1573 aa16.71■□□□□ 0.27
POLR2J3-201ENST00000379340 IFT140Q96RY7 1462 aa16.7■□□□□ 0.26
POLR2J3-201ENST00000379340 AEBP2Q6ZN18 517 aaPredicted RBP16.69■□□□□ 0.26
POLR2J3-201ENST00000379340 TRHP20396 242 aaPredicted RBP16.67■□□□□ 0.26
POLR2J3-201ENST00000379340 PRDM2Q13029 1718 aa16.66■□□□□ 0.26
POLR2J3-201ENST00000379340 ARAP1Q96P48 1450 aa16.66■□□□□ 0.26
POLR2J3-201ENST00000379340 TOP2BQ02880 1626 aa16.66■□□□□ 0.26
POLR2J3-201ENST00000379340 BIVM-ERCC5R4GMW8 1640 aa16.66■□□□□ 0.26
POLR2J3-201ENST00000379340 SOGA1O94964 1423 aa16.66■□□□□ 0.26
POLR2J3-201ENST00000379340 EIF4G3O43432 1585 aaKnown RBP16.65■□□□□ 0.26
POLR2J3-201ENST00000379340 TOPBP1Q92547 1522 aa16.64■□□□□ 0.25
POLR2J3-201ENST00000379340 PCGF6Q9BYE7 350 aa16.63■□□□□ 0.25
POLR2J3-201ENST00000379340 TRIM26Q12899 539 aaPredicted RBP16.61■□□□□ 0.25
POLR2J3-201ENST00000379340 CHD1O14646 1710 aa16.61■□□□□ 0.25
POLR2J3-201ENST00000379340 CSRNP3Q8WYN3 585 aa16.6■□□□□ 0.25
POLR2J3-201ENST00000379340 AQRO60306 1485 aaKnown RBP eCLIP16.59■□□□□ 0.254e-8■■■■□ 22.5
POLR2J3-201ENST00000379340 TNIKQ9UKE5 1360 aa16.58■□□□□ 0.25
POLR2J3-201ENST00000379340 KIF21BO75037 1637 aa16.58■□□□□ 0.24
POLR2J3-201ENST00000379340 GOLGA3Q08378 1498 aa16.58■□□□□ 0.24
POLR2J3-201ENST00000379340 RUSC2Q8N2Y8 1516 aa16.56■□□□□ 0.24
POLR2J3-201ENST00000379340 FBLN2P98095 1184 aa16.53■□□□□ 0.24
POLR2J3-201ENST00000379340 TARBP1Q13395 1621 aaKnown RBP16.53■□□□□ 0.24
POLR2J3-201ENST00000379340 EHMT2Q96KQ7 1210 aa16.51■□□□□ 0.23
POLR2J3-201ENST00000379340 DNMBPQ6XZF7 1577 aa16.5■□□□□ 0.23
POLR2J3-201ENST00000379340 HRCP23327 699 aa16.5■□□□□ 0.23
POLR2J3-201ENST00000379340 CEP162Q5TB80 1403 aa16.49■□□□□ 0.23
POLR2J3-201ENST00000379340 CUX1P39880 1505 aa16.48■□□□□ 0.23
POLR2J3-201ENST00000379340 POLA1P09884 1462 aaPredicted RBP16.44■□□□□ 0.22
POLR2J3-201ENST00000379340 RAD54L2Q9Y4B4 1467 aa16.44■□□□□ 0.22
POLR2J3-201ENST00000379340 TDRD9Q8NDG6 1382 aaKnown RBP16.42■□□□□ 0.22
POLR2J3-201ENST00000379340 CLASP1Q7Z460 1538 aa16.41■□□□□ 0.22
POLR2J3-201ENST00000379340 UBTFP17480 764 aaKnown RBP16.4■□□□□ 0.22
POLR2J3-201ENST00000379340 ERICH3Q5RHP9 1530 aa16.4■□□□□ 0.22
POLR2J3-201ENST00000379340 SNAPC4Q5SXM2 1469 aa16.38■□□□□ 0.21
POLR2J3-201ENST00000379340 KIF27Q86VH2 1401 aa16.36■□□□□ 0.21
POLR2J3-201ENST00000379340 PRXQ9BXM0 1461 aa16.34■□□□□ 0.21
POLR2J3-201ENST00000379340 RAPGEF2Q9Y4G8 1499 aa16.33■□□□□ 0.2
POLR2J3-201ENST00000379340 CHMP7Q8WUX9 453 aaPredicted RBP16.3■□□□□ 0.2
POLR2J3-201ENST00000379340 FGD5Q6ZNL6 1462 aa16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 8.8 ms