RNA–Protein interactions for RNA: ENST00000378060.8

VPS36-201, Transcript of vacuolar protein sorting 36 homolog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS36, Length 4,417 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS36-201ENST00000378060 NISCHQ9Y2I1 1504 aa17.02■□□□□ 0.32
VPS36-201ENST00000378060 CCDC180Q9P1Z9 1646 aa14.89□□□□□ -0.03
VPS36-201ENST00000378060 ABCC9O60706 1549 aa14.51□□□□□ -0.09
VPS36-201ENST00000378060 DCAF8L2P0C7V8 631 aa14.35□□□□□ -0.11
VPS36-201ENST00000378060 ZCCHC6Q5VYS8 1495 aaKnown RBP14.24□□□□□ -0.13
VPS36-201ENST00000378060 SHROOM4Q9ULL8 1493 aa13.96□□□□□ -0.18
VPS36-201ENST00000378060 DCAF1Q9Y4B6 1507 aa13.94□□□□□ -0.18
VPS36-201ENST00000378060 NACADO15069 1562 aa13.92□□□□□ -0.18
VPS36-201ENST00000378060 RB1CC1Q8TDY2 1594 aa13.91□□□□□ -0.18
VPS36-201ENST00000378060 SCRIBQ14160 1630 aa13.86□□□□□ -0.19
VPS36-201ENST00000378060 MYO15BQ96JP2 1530 aa13.83□□□□□ -0.2
VPS36-201ENST00000378060 UNC13AQ9UPW8 1703 aa13.76□□□□□ -0.21
VPS36-201ENST00000378060 SUPT5HO00267 1087 aaKnown RBP13.74□□□□□ -0.21
VPS36-201ENST00000378060 PABPN1Q86U42 306 aaKnown RBP eCLIP13.68□□□□□ -0.22
VPS36-201ENST00000378060 BICRAQ9NZM4 1560 aa13.57□□□□□ -0.24
VPS36-201ENST00000378060 CECR2Q9BXF3 1484 aa13.36□□□□□ -0.27
VPS36-201ENST00000378060 MROH2BQ7Z745 1585 aa13.22□□□□□ -0.29
VPS36-201ENST00000378060 EIF4G1Q04637 1599 aaKnown RBP13.17□□□□□ -0.3
VPS36-201ENST00000378060 SMARCA4P51532 1647 aa13.17□□□□□ -0.3
VPS36-201ENST00000378060 PELP1Q8IZL8 1130 aaKnown RBP13.16□□□□□ -0.3
VPS36-201ENST00000378060 RSF1Q96T23 1441 aaPredicted RBP13.15□□□□□ -0.31
VPS36-201ENST00000378060 WIZO95785 1651 aa13.14□□□□□ -0.31
VPS36-201ENST00000378060 BAZ1AQ9NRL2 1556 aaPredicted RBP13.14□□□□□ -0.31
VPS36-201ENST00000378060 DNAJC5BQ9UF47 199 aa13.08□□□□□ -0.31
VPS36-201ENST00000378060 CC2D2AQ9P2K1 1620 aa13.07□□□□□ -0.32
VPS36-201ENST00000378060 PCGF6Q9BYE7 350 aa13.06□□□□□ -0.32
VPS36-201ENST00000378060 EHMT2Q96KQ7 1210 aa13.02□□□□□ -0.33
VPS36-201ENST00000378060 ZEB1P37275 1124 aaPredicted RBP13□□□□□ -0.33
VPS36-201ENST00000378060 ATAD2BQ9ULI0 1458 aa13□□□□□ -0.33
VPS36-201ENST00000378060 APLP2Q06481 763 aa12.98□□□□□ -0.33
VPS36-201ENST00000378060 SMARCA2P51531 1590 aa12.92□□□□□ -0.34
VPS36-201ENST00000378060 PEG3Q9GZU2 1588 aa12.92□□□□□ -0.34
VPS36-201ENST00000378060 BAZ1BQ9UIG0 1483 aaKnown RBP12.92□□□□□ -0.34
VPS36-201ENST00000378060 FAM9AQ8IZU1 332 aaPredicted RBP12.88□□□□□ -0.35
VPS36-201ENST00000378060 TOP2AP11388 1531 aaKnown RBP12.88□□□□□ -0.35
VPS36-201ENST00000378060 NCAPD3P42695 1498 aa12.87□□□□□ -0.35
VPS36-201ENST00000378060 CENPBP07199 599 aaPredicted RBP12.86□□□□□ -0.35
VPS36-201ENST00000378060 HMGXB3Q12766 1538 aa12.83□□□□□ -0.36
VPS36-201ENST00000378060 TRIM41Q8WV44 630 aa12.8□□□□□ -0.36
VPS36-201ENST00000378060 CCDC88BA6NC98 1476 aa12.8□□□□□ -0.36
VPS36-201ENST00000378060 CCER1Q8TC90 406 aaPredicted RBP12.73□□□□□ -0.37
VPS36-201ENST00000378060 NESP48681 1621 aa12.69□□□□□ -0.38
VPS36-201ENST00000378060 HRCP23327 699 aa12.65□□□□□ -0.38
VPS36-201ENST00000378060 MYT1Q01538 1121 aa12.65□□□□□ -0.38
VPS36-201ENST00000378060 TTBK1Q5TCY1 1321 aaPredicted RBP12.64□□□□□ -0.39
VPS36-201ENST00000378060 TRIM26Q12899 539 aaPredicted RBP12.63□□□□□ -0.39
VPS36-201ENST00000378060 CADPSQ9ULU8 1353 aa12.55□□□□□ -0.4
VPS36-201ENST00000378060 ABCC8Q09428 1581 aa12.55□□□□□ -0.4
VPS36-201ENST00000378060 CFTRP13569 1480 aa12.55□□□□□ -0.4
VPS36-201ENST00000378060 UBTFP17480 764 aaKnown RBP12.54□□□□□ -0.4
VPS36-201ENST00000378060 CHIC1Q5VXU3 224 aa12.51□□□□□ -0.41
VPS36-201ENST00000378060 KIF21AQ7Z4S6 1674 aa12.5□□□□□ -0.41
VPS36-201ENST00000378060 LAMC3Q9Y6N6 1575 aa12.48□□□□□ -0.41
VPS36-201ENST00000378060 ERICH6Q7L0X2 663 aa12.48□□□□□ -0.41
VPS36-201ENST00000378060 PRDM2Q13029 1718 aa12.47□□□□□ -0.41
VPS36-201ENST00000378060 FANCD2Q9BXW9 1451 aa12.46□□□□□ -0.41
VPS36-201ENST00000378060 RANGAP1P46060 587 aaPredicted RBP12.43□□□□□ -0.42
VPS36-201ENST00000378060 NEFLP07196 543 aa12.43□□□□□ -0.42
VPS36-201ENST00000378060 ERCC6Q03468 1493 aa12.41□□□□□ -0.42
VPS36-201ENST00000378060 SYNJ1O43426 1573 aa12.4□□□□□ -0.42
VPS36-201ENST00000378060 CEP164Q9UPV0 1460 aa12.39□□□□□ -0.43
VPS36-201ENST00000378060 PDS5BQ9NTI5 1447 aa12.39□□□□□ -0.43
VPS36-201ENST00000378060 CUX1P39880 1505 aa12.37□□□□□ -0.43
VPS36-201ENST00000378060 WRNQ14191 1432 aaPredicted RBP eCLIP12.37□□□□□ -0.43
VPS36-201ENST00000378060 YTHDC1Q96MU7 727 aaKnown RBP12.37□□□□□ -0.43
VPS36-201ENST00000378060 LOC105371045A0A1W2PR82 267 aa12.36□□□□□ -0.43
VPS36-201ENST00000378060 URB2Q14146 1524 aaKnown RBP12.35□□□□□ -0.43
VPS36-201ENST00000378060 PPARGC1BQ86YN6 1023 aaKnown RBP12.32□□□□□ -0.44
VPS36-201ENST00000378060 ATP1B4Q9UN42 357 aaPredicted RBP12.32□□□□□ -0.44
VPS36-201ENST00000378060 THOC2Q8NI27 1593 aaKnown RBP12.3□□□□□ -0.44
VPS36-201ENST00000378060 TOPBP1Q92547 1522 aa12.3□□□□□ -0.44
VPS36-201ENST00000378060 TOP2BQ02880 1626 aa12.28□□□□□ -0.44
VPS36-201ENST00000378060 MRC2Q9UBG0 1479 aa12.28□□□□□ -0.44
VPS36-201ENST00000378060 BIVM-ERCC5R4GMW8 1640 aa12.27□□□□□ -0.45
VPS36-201ENST00000378060 DNMBPQ6XZF7 1577 aa12.27□□□□□ -0.45
VPS36-201ENST00000378060 FGD5Q6ZNL6 1462 aa12.26□□□□□ -0.45
VPS36-201ENST00000378060 RAD54L2Q9Y4B4 1467 aa12.26□□□□□ -0.45
VPS36-201ENST00000378060 POLA1P09884 1462 aaPredicted RBP12.23□□□□□ -0.45
VPS36-201ENST00000378060 RUSC2Q8N2Y8 1516 aa12.23□□□□□ -0.45
VPS36-201ENST00000378060 WDR62O43379 1518 aa12.23□□□□□ -0.45
VPS36-201ENST00000378060 SOGA1O94964 1423 aa12.23□□□□□ -0.45
VPS36-201ENST00000378060 CUX2O14529 1486 aa12.19□□□□□ -0.46
VPS36-201ENST00000378060 TDRD9Q8NDG6 1382 aaKnown RBP12.15□□□□□ -0.46
VPS36-201ENST00000378060 ZNF608Q9ULD9 1512 aaPredicted RBP12.15□□□□□ -0.46
VPS36-201ENST00000378060 DIEXFQ68CQ4 756 aaKnown RBP12.15□□□□□ -0.46
VPS36-201ENST00000378060 TARBP1Q13395 1621 aaKnown RBP12.14□□□□□ -0.47
VPS36-201ENST00000378060 HNRNPUL2Q1KMD3 747 aaKnown RBP12.13□□□□□ -0.47
VPS36-201ENST00000378060 AQRO60306 1485 aaKnown RBP eCLIP12.12□□□□□ -0.471e-8■■■□□ 19.1
VPS36-201ENST00000378060 WDR97A6NE52 1622 aa12.11□□□□□ -0.47
VPS36-201ENST00000378060 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.1□□□□□ -0.47
VPS36-201ENST00000378060 ABCA10Q8WWZ4 1543 aa12.08□□□□□ -0.48
VPS36-201ENST00000378060 EIF4G3O43432 1585 aaKnown RBP12.06□□□□□ -0.48
VPS36-201ENST00000378060 IFT140Q96RY7 1462 aa12.06□□□□□ -0.48
VPS36-201ENST00000378060 ITGAEP38570 1179 aa12.06□□□□□ -0.48
VPS36-201ENST00000378060 ABCA5Q8WWZ7 1642 aa12.04□□□□□ -0.48
VPS36-201ENST00000378060 KIF27Q86VH2 1401 aa12.04□□□□□ -0.48
VPS36-201ENST00000378060 GAPVD1Q14C86 1478 aa12.03□□□□□ -0.48
VPS36-201ENST00000378060 PBRM1Q86U86 1689 aa12.02□□□□□ -0.49
VPS36-201ENST00000378060 CSRNP3Q8WYN3 585 aa12□□□□□ -0.49
VPS36-201ENST00000378060 IGF1RP08069 1367 aa11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms