RNA–Protein interactions for RNA: ENST00000373088.5

PCDH11X-204, Transcript of protocadherin 11 X-linked, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PCDH11X, Length 4,069 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH11X-204ENST00000373088 NISCHQ9Y2I1 1504 aa9.57□□□□□ -0.88
PCDH11X-204ENST00000373088 DCAF8L2P0C7V8 631 aa8.53□□□□□ -1.04
PCDH11X-204ENST00000373088 SHROOM4Q9ULL8 1493 aa8.31□□□□□ -1.08
PCDH11X-204ENST00000373088 SUPT5HO00267 1087 aaKnown RBP8.11□□□□□ -1.11
PCDH11X-204ENST00000373088 CCDC180Q9P1Z9 1646 aa8.09□□□□□ -1.11
PCDH11X-204ENST00000373088 ABCC9O60706 1549 aa8.04□□□□□ -1.12
PCDH11X-204ENST00000373088 ZCCHC6Q5VYS8 1495 aaKnown RBP8□□□□□ -1.13
PCDH11X-204ENST00000373088 PABPN1Q86U42 306 aaKnown RBP eCLIP7.76□□□□□ -1.17
PCDH11X-204ENST00000373088 SCRIBQ14160 1630 aa7.76□□□□□ -1.17
PCDH11X-204ENST00000373088 AEBP2Q6ZN18 517 aaPredicted RBP7.75□□□□□ -1.17
PCDH11X-204ENST00000373088 DCAF1Q9Y4B6 1507 aa7.74□□□□□ -1.17
PCDH11X-204ENST00000373088 NACADO15069 1562 aa7.67□□□□□ -1.18
PCDH11X-204ENST00000373088 RB1CC1Q8TDY2 1594 aa7.64□□□□□ -1.19
PCDH11X-204ENST00000373088 MYO15BQ96JP2 1530 aa7.59□□□□□ -1.19
PCDH11X-204ENST00000373088 CHIC1Q5VXU3 224 aa7.59□□□□□ -1.19
PCDH11X-204ENST00000373088 EHMT2Q96KQ7 1210 aa7.58□□□□□ -1.2
PCDH11X-204ENST00000373088 FAM9AQ8IZU1 332 aaPredicted RBP7.56□□□□□ -1.2
PCDH11X-204ENST00000373088 CECR2Q9BXF3 1484 aa7.55□□□□□ -1.2
PCDH11X-204ENST00000373088 RSF1Q96T23 1441 aaPredicted RBP7.54□□□□□ -1.2
PCDH11X-204ENST00000373088 TRIM41Q8WV44 630 aa7.53□□□□□ -1.2
PCDH11X-204ENST00000373088 MROH2BQ7Z745 1585 aa7.45□□□□□ -1.22
PCDH11X-204ENST00000373088 LOC105371045A0A1W2PR82 267 aa7.44□□□□□ -1.22
PCDH11X-204ENST00000373088 BAZ1AQ9NRL2 1556 aaPredicted RBP7.39□□□□□ -1.23
PCDH11X-204ENST00000373088 WIZO95785 1651 aa7.36□□□□□ -1.23
PCDH11X-204ENST00000373088 BICRAQ9NZM4 1560 aa7.31□□□□□ -1.24
PCDH11X-204ENST00000373088 RANGAP1P46060 587 aaPredicted RBP7.3□□□□□ -1.24
PCDH11X-204ENST00000373088 SMARCA4P51532 1647 aa7.3□□□□□ -1.24
PCDH11X-204ENST00000373088 BAZ1BQ9UIG0 1483 aaKnown RBP7.29□□□□□ -1.24
PCDH11X-204ENST00000373088 UBTFP17480 764 aaKnown RBP7.28□□□□□ -1.24
PCDH11X-204ENST00000373088 CCDC88BA6NC98 1476 aa7.28□□□□□ -1.24
PCDH11X-204ENST00000373088 UNC13AQ9UPW8 1703 aa7.28□□□□□ -1.24
PCDH11X-204ENST00000373088 ATAD2BQ9ULI0 1458 aa7.26□□□□□ -1.25
PCDH11X-204ENST00000373088 TTBK1Q5TCY1 1321 aaPredicted RBP7.25□□□□□ -1.25
PCDH11X-204ENST00000373088 PCGF6Q9BYE7 350 aa7.25□□□□□ -1.25
PCDH11X-204ENST00000373088 PPARGC1BQ86YN6 1023 aaKnown RBP7.24□□□□□ -1.25
PCDH11X-204ENST00000373088 TOP2AP11388 1531 aaKnown RBP7.24□□□□□ -1.25
PCDH11X-204ENST00000373088 SMARCA2P51531 1590 aa7.21□□□□□ -1.26
PCDH11X-204ENST00000373088 CSRNP3Q8WYN3 585 aa7.18□□□□□ -1.26
PCDH11X-204ENST00000373088 EIF4G1Q04637 1599 aaKnown RBP7.18□□□□□ -1.26
PCDH11X-204ENST00000373088 ABCC8Q09428 1581 aa7.18□□□□□ -1.26
PCDH11X-204ENST00000373088 WRNQ14191 1432 aaPredicted RBP eCLIP7.16□□□□□ -1.26
PCDH11X-204ENST00000373088 NCAPD3P42695 1498 aa7.13□□□□□ -1.27
PCDH11X-204ENST00000373088 SOGA1O94964 1423 aa7.13□□□□□ -1.27
PCDH11X-204ENST00000373088 APLP2Q06481 763 aa7.13□□□□□ -1.27
PCDH11X-204ENST00000373088 DNAJC5BQ9UF47 199 aa7.11□□□□□ -1.27
PCDH11X-204ENST00000373088 ATP1B4Q9UN42 357 aaPredicted RBP7.09□□□□□ -1.27
PCDH11X-204ENST00000373088 TRIM26Q12899 539 aaPredicted RBP7.08□□□□□ -1.28
PCDH11X-204ENST00000373088 CADPSQ9ULU8 1353 aa7.08□□□□□ -1.28
PCDH11X-204ENST00000373088 CC2D2AQ9P2K1 1620 aa7.08□□□□□ -1.28
PCDH11X-204ENST00000373088 PEG3Q9GZU2 1588 aa7.07□□□□□ -1.28
PCDH11X-204ENST00000373088 RUSC2Q8N2Y8 1516 aa7.07□□□□□ -1.28
PCDH11X-204ENST00000373088 HMGXB3Q12766 1538 aa7.04□□□□□ -1.28
PCDH11X-204ENST00000373088 EEA1Q15075 1411 aa7.02□□□□□ -1.29
PCDH11X-204ENST00000373088 P3H3Q8IVL6 736 aa7.02□□□□□ -1.29
PCDH11X-204ENST00000373088 NESP48681 1621 aa7.01□□□□□ -1.29
PCDH11X-204ENST00000373088 CFTRP13569 1480 aa7.01□□□□□ -1.29
PCDH11X-204ENST00000373088 KIF27Q86VH2 1401 aa7□□□□□ -1.29
PCDH11X-204ENST00000373088 CEP162Q5TB80 1403 aa6.99□□□□□ -1.29
PCDH11X-204ENST00000373088 FANCD2Q9BXW9 1451 aa6.99□□□□□ -1.29
PCDH11X-204ENST00000373088 SYNJ1O43426 1573 aa6.99□□□□□ -1.29
PCDH11X-204ENST00000373088 GOLGA3Q08378 1498 aa6.99□□□□□ -1.29
PCDH11X-204ENST00000373088 FBLN2P98095 1184 aa6.98□□□□□ -1.29
PCDH11X-204ENST00000373088 CUX2O14529 1486 aa6.98□□□□□ -1.29
PCDH11X-204ENST00000373088 TNIKQ9UKE5 1360 aa6.98□□□□□ -1.29
PCDH11X-204ENST00000373088 CEP164Q9UPV0 1460 aa6.97□□□□□ -1.29
PCDH11X-204ENST00000373088 PDS5BQ9NTI5 1447 aa6.97□□□□□ -1.29
PCDH11X-204ENST00000373088 HNRNPUL2Q1KMD3 747 aaKnown RBP6.96□□□□□ -1.29
PCDH11X-204ENST00000373088 CLIP1P30622 1438 aa6.96□□□□□ -1.3
PCDH11X-204ENST00000373088 CCER1Q8TC90 406 aaPredicted RBP6.95□□□□□ -1.3
PCDH11X-204ENST00000373088 TDRD9Q8NDG6 1382 aaKnown RBP6.95□□□□□ -1.3
PCDH11X-204ENST00000373088 HRCP23327 699 aa6.95□□□□□ -1.3
PCDH11X-204ENST00000373088 ITGAEP38570 1179 aa6.94□□□□□ -1.3
PCDH11X-204ENST00000373088 RAPGEF2Q9Y4G8 1499 aa6.94□□□□□ -1.3
PCDH11X-204ENST00000373088 CUX1P39880 1505 aa6.94□□□□□ -1.3
PCDH11X-204ENST00000373088 CARMIL1Q5VZK9 1371 aa6.93□□□□□ -1.3
PCDH11X-204ENST00000373088 ERCC6Q03468 1493 aa6.93□□□□□ -1.3
PCDH11X-204ENST00000373088 RAD54L2Q9Y4B4 1467 aa6.93□□□□□ -1.3
PCDH11X-204ENST00000373088 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP6.92□□□□□ -1.3
PCDH11X-204ENST00000373088 FGD5Q6ZNL6 1462 aa6.92□□□□□ -1.3
PCDH11X-204ENST00000373088 ARID3CA6NKF2 412 aa6.91□□□□□ -1.3
PCDH11X-204ENST00000373088 TOP2BQ02880 1626 aa6.9□□□□□ -1.3
PCDH11X-204ENST00000373088 IGF1RP08069 1367 aa6.9□□□□□ -1.3
PCDH11X-204ENST00000373088 CHMP7Q8WUX9 453 aaPredicted RBP6.87□□□□□ -1.31
PCDH11X-204ENST00000373088 TOPBP1Q92547 1522 aa6.86□□□□□ -1.31
PCDH11X-204ENST00000373088 POLA1P09884 1462 aaPredicted RBP6.85□□□□□ -1.31
PCDH11X-204ENST00000373088 ZEB1P37275 1124 aaPredicted RBP6.85□□□□□ -1.31
PCDH11X-204ENST00000373088 FAM50AQ14320 339 aaKnown RBP6.85□□□□□ -1.31
PCDH11X-204ENST00000373088 AQRO60306 1485 aaKnown RBP eCLIP6.83□□□□□ -1.32
PCDH11X-204ENST00000373088 LAMC3Q9Y6N6 1575 aa6.83□□□□□ -1.32
PCDH11X-204ENST00000373088 KANK4Q5T7N3 995 aaPredicted RBP6.83□□□□□ -1.32
PCDH11X-204ENST00000373088 VPS8Q8N3P4 1428 aa6.83□□□□□ -1.32
PCDH11X-204ENST00000373088 URB2Q14146 1524 aaKnown RBP6.83□□□□□ -1.32
PCDH11X-204ENST00000373088 PRXQ9BXM0 1461 aa6.83□□□□□ -1.32
PCDH11X-204ENST00000373088 GAPVD1Q14C86 1478 aa6.82□□□□□ -1.32
PCDH11X-204ENST00000373088 DNMBPQ6XZF7 1577 aa6.81□□□□□ -1.32
PCDH11X-204ENST00000373088 BIVM-ERCC5R4GMW8 1640 aa6.81□□□□□ -1.32
PCDH11X-204ENST00000373088 KIF21BO75037 1637 aa6.8□□□□□ -1.32
PCDH11X-204ENST00000373088 MRC2Q9UBG0 1479 aa6.79□□□□□ -1.32
PCDH11X-204ENST00000373088 FHOD3Q2V2M9 1422 aa6.78□□□□□ -1.32
PCDH11X-204ENST00000373088 ABCA10Q8WWZ4 1543 aa6.78□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms