RNA–Protein interactions for RNA: ENST00000359785.9

PTPN22-201, Transcript of protein tyrosine phosphatase, non-receptor type 22, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene PTPN22, Length 3,654 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN22-201ENST00000359785 NISCHQ9Y2I1 1504 aa9.46□□□□□ -0.9
PTPN22-201ENST00000359785 CCDC180Q9P1Z9 1646 aa8.51□□□□□ -1.05
PTPN22-201ENST00000359785 DCAF1Q9Y4B6 1507 aa8.32□□□□□ -1.08
PTPN22-201ENST00000359785 ZCCHC6Q5VYS8 1495 aaKnown RBP8.21□□□□□ -1.09
PTPN22-201ENST00000359785 MYO15BQ96JP2 1530 aa8.08□□□□□ -1.12
PTPN22-201ENST00000359785 ABCC9O60706 1549 aa7.9□□□□□ -1.15
PTPN22-201ENST00000359785 AEBP2Q6ZN18 517 aaPredicted RBP7.85□□□□□ -1.15
PTPN22-201ENST00000359785 POTEDQ86YR6 584 aa7.84□□□□□ -1.15
PTPN22-201ENST00000359785 EIF4G1Q04637 1599 aaKnown RBP7.81□□□□□ -1.16
PTPN22-201ENST00000359785 PELP1Q8IZL8 1130 aaKnown RBP7.77□□□□□ -1.17
PTPN22-201ENST00000359785 HRCP23327 699 aa7.74□□□□□ -1.17
PTPN22-201ENST00000359785 RB1CC1Q8TDY2 1594 aa7.65□□□□□ -1.18
PTPN22-201ENST00000359785 NACADO15069 1562 aa7.64□□□□□ -1.19
PTPN22-201ENST00000359785 MYT1Q01538 1121 aa7.62□□□□□ -1.19
PTPN22-201ENST00000359785 SHROOM4Q9ULL8 1493 aa7.57□□□□□ -1.2
PTPN22-201ENST00000359785 BAZ1AQ9NRL2 1556 aaPredicted RBP7.54□□□□□ -1.2
PTPN22-201ENST00000359785 CHIC1Q5VXU3 224 aa7.53□□□□□ -1.2
PTPN22-201ENST00000359785 WRNQ14191 1432 aaPredicted RBP eCLIP7.51□□□□□ -1.21
PTPN22-201ENST00000359785 PEG3Q9GZU2 1588 aa7.47□□□□□ -1.21
PTPN22-201ENST00000359785 ZEB1P37275 1124 aaPredicted RBP7.46□□□□□ -1.21
PTPN22-201ENST00000359785 TTBK1Q5TCY1 1321 aaPredicted RBP7.39□□□□□ -1.23
PTPN22-201ENST00000359785 KIF21BO75037 1637 aa7.38□□□□□ -1.23
PTPN22-201ENST00000359785 UNC13AQ9UPW8 1703 aa7.37□□□□□ -1.23
PTPN22-201ENST00000359785 RSF1Q96T23 1441 aaPredicted RBP7.35□□□□□ -1.23
PTPN22-201ENST00000359785 PRDM2Q13029 1718 aa7.35□□□□□ -1.23
PTPN22-201ENST00000359785 TOP2AP11388 1531 aaKnown RBP7.34□□□□□ -1.23
PTPN22-201ENST00000359785 EEA1Q15075 1411 aa7.33□□□□□ -1.24
PTPN22-201ENST00000359785 TRIM26Q12899 539 aaPredicted RBP7.31□□□□□ -1.24
PTPN22-201ENST00000359785 CUX2O14529 1486 aa7.29□□□□□ -1.24
PTPN22-201ENST00000359785 CLSPNQ9HAW4 1339 aa7.28□□□□□ -1.24
PTPN22-201ENST00000359785 BIVM-ERCC5R4GMW8 1640 aa7.27□□□□□ -1.25
PTPN22-201ENST00000359785 BAZ1BQ9UIG0 1483 aaKnown RBP7.25□□□□□ -1.25
PTPN22-201ENST00000359785 SMARCA4P51532 1647 aa7.24□□□□□ -1.25
PTPN22-201ENST00000359785 SMARCA2P51531 1590 aa7.24□□□□□ -1.25
PTPN22-201ENST00000359785 ERICH3Q5RHP9 1530 aa7.2□□□□□ -1.26
PTPN22-201ENST00000359785 MAP3K1Q13233 1512 aa7.2□□□□□ -1.26
PTPN22-201ENST00000359785 BICRAQ9NZM4 1560 aa7.2□□□□□ -1.26
PTPN22-201ENST00000359785 WIZO95785 1651 aa7.18□□□□□ -1.26
PTPN22-201ENST00000359785 SYNJ1O43426 1573 aa7.17□□□□□ -1.26
PTPN22-201ENST00000359785 POLR1AO95602 1720 aaPredicted RBP7.15□□□□□ -1.26
PTPN22-201ENST00000359785 MROH2BQ7Z745 1585 aa7.15□□□□□ -1.26
PTPN22-201ENST00000359785 SCRIBQ14160 1630 aa7.14□□□□□ -1.27
PTPN22-201ENST00000359785 TNIKQ9UKE5 1360 aa7.12□□□□□ -1.27
PTPN22-201ENST00000359785 CFAP43Q8NDM7 1665 aa7.12□□□□□ -1.27
PTPN22-201ENST00000359785 GOLGA3Q08378 1498 aa7.12□□□□□ -1.27
PTPN22-201ENST00000359785 SCAF1Q9H7N4 1312 aaKnown RBP7.11□□□□□ -1.27
PTPN22-201ENST00000359785 KIF21AQ7Z4S6 1674 aa7.11□□□□□ -1.27
PTPN22-201ENST00000359785 TOP2BQ02880 1626 aa7.1□□□□□ -1.27
PTPN22-201ENST00000359785 TRIM41Q8WV44 630 aa7.07□□□□□ -1.28
PTPN22-201ENST00000359785 HMGXB3Q12766 1538 aa7.06□□□□□ -1.28
PTPN22-201ENST00000359785 ACIN1Q9UKV3 1341 aaKnown RBP7.06□□□□□ -1.28
PTPN22-201ENST00000359785 ABCA5Q8WWZ7 1642 aa7.03□□□□□ -1.28
PTPN22-201ENST00000359785 CEP164Q9UPV0 1460 aa7.01□□□□□ -1.29
PTPN22-201ENST00000359785 RRBP1Q9P2E9 1410 aaKnown RBP7□□□□□ -1.29
PTPN22-201ENST00000359785 PCGF6Q9BYE7 350 aa7□□□□□ -1.29
PTPN22-201ENST00000359785 CEP162Q5TB80 1403 aa6.98□□□□□ -1.29
PTPN22-201ENST00000359785 THOC2Q8NI27 1593 aaKnown RBP6.97□□□□□ -1.29
PTPN22-201ENST00000359785 CCDC88BA6NC98 1476 aa6.96□□□□□ -1.3
PTPN22-201ENST00000359785 VPS8Q8N3P4 1428 aa6.96□□□□□ -1.3
PTPN22-201ENST00000359785 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP6.96□□□□□ -1.3
PTPN22-201ENST00000359785 WDR97A6NE52 1622 aa6.96□□□□□ -1.3
PTPN22-201ENST00000359785 CECR2Q9BXF3 1484 aa6.95□□□□□ -1.3
PTPN22-201ENST00000359785 PPARGC1BQ86YN6 1023 aaKnown RBP6.94□□□□□ -1.3
PTPN22-201ENST00000359785 PRXQ9BXM0 1461 aa6.94□□□□□ -1.3
PTPN22-201ENST00000359785 GCC2Q8IWJ2 1684 aa6.93□□□□□ -1.3
PTPN22-201ENST00000359785 NCAPD3P42695 1498 aa6.93□□□□□ -1.3
PTPN22-201ENST00000359785 ABCC8Q09428 1581 aa6.91□□□□□ -1.3
PTPN22-201ENST00000359785 AQRO60306 1485 aaKnown RBP eCLIP6.91□□□□□ -1.3
PTPN22-201ENST00000359785 SUPT5HO00267 1087 aaKnown RBP6.9□□□□□ -1.3
PTPN22-201ENST00000359785 CTTNBP2Q8WZ74 1663 aa6.9□□□□□ -1.31
PTPN22-201ENST00000359785 CC2D2AQ9P2K1 1620 aa6.89□□□□□ -1.31
PTPN22-201ENST00000359785 HECW1Q76N89 1606 aa6.88□□□□□ -1.31
PTPN22-201ENST00000359785 CENPBP07199 599 aaPredicted RBP6.88□□□□□ -1.31
PTPN22-201ENST00000359785 MAPKBP1O60336 1514 aa6.88□□□□□ -1.31
PTPN22-201ENST00000359785 ARAP1Q96P48 1450 aa6.87□□□□□ -1.31
PTPN22-201ENST00000359785 ATAD2BQ9ULI0 1458 aa6.86□□□□□ -1.31
PTPN22-201ENST00000359785 TIAM1Q13009 1591 aa6.86□□□□□ -1.31
PTPN22-201ENST00000359785 EFCAB5A4FU69 1503 aa6.86□□□□□ -1.31
PTPN22-201ENST00000359785 CUL7Q14999 1698 aa6.86□□□□□ -1.31
PTPN22-201ENST00000359785 ARHGEF11O15085 1522 aa6.85□□□□□ -1.31
PTPN22-201ENST00000359785 KDM5BQ9UGL1 1544 aa6.84□□□□□ -1.31
PTPN22-201ENST00000359785 CLIP1P30622 1438 aa6.84□□□□□ -1.32
PTPN22-201ENST00000359785 SAMD9Q5K651 1589 aa6.83□□□□□ -1.32
PTPN22-201ENST00000359785 AKNAQ7Z591 1439 aa6.83□□□□□ -1.32
PTPN22-201ENST00000359785 NEUROD1Q13562 356 aa6.83□□□□□ -1.32
PTPN22-201ENST00000359785 ZMYM4Q5VZL5 1548 aa6.82□□□□□ -1.32
PTPN22-201ENST00000359785 LRRIQ1Q96JM4 1722 aa6.81□□□□□ -1.32
PTPN22-201ENST00000359785 E9PCH4 1651 aa6.8□□□□□ -1.32
PTPN22-201ENST00000359785 ZNF316A6NFI3 1004 aaPredicted RBP6.79□□□□□ -1.32
PTPN22-201ENST00000359785 NCOA2Q15596 1464 aa6.79□□□□□ -1.32
PTPN22-201ENST00000359785 TIMELESSQ9UNS1 1208 aa6.79□□□□□ -1.32
PTPN22-201ENST00000359785 VIRMAQ69YN4 1812 aaKnown RBP6.79□□□□□ -1.32
PTPN22-201ENST00000359785 DHX57Q6P158 1386 aaKnown RBP6.78□□□□□ -1.32
PTPN22-201ENST00000359785 LAMC3Q9Y6N6 1575 aa6.78□□□□□ -1.32
PTPN22-201ENST00000359785 LOC105371045A0A1W2PR82 267 aa6.77□□□□□ -1.33
PTPN22-201ENST00000359785 LAMC1P11047 1609 aa6.77□□□□□ -1.33
PTPN22-201ENST00000359785 MYT1LQ9UL68 1186 aa6.75□□□□□ -1.33
PTPN22-201ENST00000359785 DIEXFQ68CQ4 756 aaKnown RBP6.75□□□□□ -1.33
PTPN22-201ENST00000359785 FYCO1Q9BQS8 1478 aa6.75□□□□□ -1.33
PTPN22-201ENST00000359785 CROCC2H7BZ55 1655 aa6.75□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms