RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 AEBP2Q6ZN18 517 aaPredicted RBP9.89□□□□□ -0.83
MCF2-201ENST00000338585 CHIC1Q5VXU3 224 aa9.5□□□□□ -0.89
MCF2-201ENST00000338585 NISCHQ9Y2I1 1504 aa9.43□□□□□ -0.9
MCF2-201ENST00000338585 POTEDQ86YR6 584 aa9□□□□□ -0.97
MCF2-201ENST00000338585 SENP3Q9H4L4 574 aaPredicted RBP8.8□□□□□ -1
MCF2-201ENST00000338585 PHF23Q9BUL5 403 aaPredicted RBP8.46□□□□□ -1.06
MCF2-201ENST00000338585 CCDC180Q9P1Z9 1646 aa8.19□□□□□ -1.1
MCF2-201ENST00000338585 FOXD1Q16676 465 aa8.13□□□□□ -1.11
MCF2-201ENST00000338585 MSH5O43196 834 aa8.1□□□□□ -1.11
MCF2-201ENST00000338585 ZCCHC6Q5VYS8 1495 aaKnown RBP7.92□□□□□ -1.14
MCF2-201ENST00000338585 DCAF8L2P0C7V8 631 aa7.84□□□□□ -1.16
MCF2-201ENST00000338585 ABCC9O60706 1549 aa7.83□□□□□ -1.16
MCF2-201ENST00000338585 DCAF1Q9Y4B6 1507 aa7.76□□□□□ -1.17
MCF2-201ENST00000338585 SHROOM4Q9ULL8 1493 aa7.74□□□□□ -1.17
MCF2-201ENST00000338585 MYO15BQ96JP2 1530 aa7.66□□□□□ -1.18
MCF2-201ENST00000338585 NACADO15069 1562 aa7.64□□□□□ -1.19
MCF2-201ENST00000338585 SCRIBQ14160 1630 aa7.59□□□□□ -1.19
MCF2-201ENST00000338585 RB1CC1Q8TDY2 1594 aa7.58□□□□□ -1.2
MCF2-201ENST00000338585 UNC13AQ9UPW8 1703 aa7.46□□□□□ -1.22
MCF2-201ENST00000338585 PIAS4Q8N2W9 510 aaPredicted RBP7.45□□□□□ -1.22
MCF2-201ENST00000338585 SUPT5HO00267 1087 aaKnown RBP7.43□□□□□ -1.22
MCF2-201ENST00000338585 PABPN1Q86U42 306 aaKnown RBP eCLIP7.4□□□□□ -1.23
MCF2-201ENST00000338585 BICRAQ9NZM4 1560 aa7.39□□□□□ -1.23
MCF2-201ENST00000338585 CECR2Q9BXF3 1484 aa7.36□□□□□ -1.23
MCF2-201ENST00000338585 RSF1Q96T23 1441 aaPredicted RBP7.33□□□□□ -1.24
MCF2-201ENST00000338585 CACNB1Q02641 598 aaPredicted RBP7.32□□□□□ -1.24
MCF2-201ENST00000338585 MROH2BQ7Z745 1585 aa7.31□□□□□ -1.24
MCF2-201ENST00000338585 BAZ1AQ9NRL2 1556 aaPredicted RBP7.27□□□□□ -1.25
MCF2-201ENST00000338585 SMARCA4P51532 1647 aa7.25□□□□□ -1.25
MCF2-201ENST00000338585 WIZO95785 1651 aa7.24□□□□□ -1.25
MCF2-201ENST00000338585 EIF4G1Q04637 1599 aaKnown RBP7.16□□□□□ -1.26
MCF2-201ENST00000338585 TOP2AP11388 1531 aaKnown RBP7.14□□□□□ -1.27
MCF2-201ENST00000338585 ATAD2BQ9ULI0 1458 aa7.14□□□□□ -1.27
MCF2-201ENST00000338585 PEG3Q9GZU2 1588 aa7.14□□□□□ -1.27
MCF2-201ENST00000338585 SMARCA2P51531 1590 aa7.11□□□□□ -1.27
MCF2-201ENST00000338585 BAZ1BQ9UIG0 1483 aaKnown RBP7.1□□□□□ -1.27
MCF2-201ENST00000338585 CCDC88BA6NC98 1476 aa7.08□□□□□ -1.28
MCF2-201ENST00000338585 NCAPD3P42695 1498 aa7.07□□□□□ -1.28
MCF2-201ENST00000338585 CC2D2AQ9P2K1 1620 aa7.06□□□□□ -1.28
MCF2-201ENST00000338585 HMGXB3Q12766 1538 aa7.04□□□□□ -1.28
MCF2-201ENST00000338585 ABCC8Q09428 1581 aa6.96□□□□□ -1.3
MCF2-201ENST00000338585 TRIM41Q8WV44 630 aa6.95□□□□□ -1.3
MCF2-201ENST00000338585 DNAJC5BQ9UF47 199 aa6.95□□□□□ -1.3
MCF2-201ENST00000338585 POTEHQ6S545 545 aa6.94□□□□□ -1.3
MCF2-201ENST00000338585 PPP6R1Q9UPN7 881 aa6.92□□□□□ -1.3
MCF2-201ENST00000338585 CFTRP13569 1480 aa6.91□□□□□ -1.3
MCF2-201ENST00000338585 CADPSQ9ULU8 1353 aa6.89□□□□□ -1.31
MCF2-201ENST00000338585 ADRA2BP18089 450 aa6.89□□□□□ -1.31
MCF2-201ENST00000338585 WRNQ14191 1432 aaPredicted RBP eCLIP6.89□□□□□ -1.31
MCF2-201ENST00000338585 NESP48681 1621 aa6.88□□□□□ -1.31
MCF2-201ENST00000338585 SYNJ1O43426 1573 aa6.87□□□□□ -1.31
MCF2-201ENST00000338585 FAM9AQ8IZU1 332 aaPredicted RBP6.87□□□□□ -1.31
MCF2-201ENST00000338585 PRDM2Q13029 1718 aa6.85□□□□□ -1.31
MCF2-201ENST00000338585 LOC105371045A0A1W2PR82 267 aa6.84□□□□□ -1.31
MCF2-201ENST00000338585 FANCD2Q9BXW9 1451 aa6.83□□□□□ -1.32
MCF2-201ENST00000338585 CUX1P39880 1505 aa6.83□□□□□ -1.32
MCF2-201ENST00000338585 SOGA1O94964 1423 aa6.82□□□□□ -1.32
MCF2-201ENST00000338585 TOP2BQ02880 1626 aa6.82□□□□□ -1.32
MCF2-201ENST00000338585 DMRT2Q9Y5R5 561 aa6.82□□□□□ -1.32
MCF2-201ENST00000338585 LAMC3Q9Y6N6 1575 aa6.82□□□□□ -1.32
MCF2-201ENST00000338585 RUSC2Q8N2Y8 1516 aa6.81□□□□□ -1.32
MCF2-201ENST00000338585 BIVM-ERCC5R4GMW8 1640 aa6.81□□□□□ -1.32
MCF2-201ENST00000338585 EHMT2Q96KQ7 1210 aa6.8□□□□□ -1.32
MCF2-201ENST00000338585 PLPPR3Q6T4P5 718 aa6.78□□□□□ -1.32
MCF2-201ENST00000338585 CEP164Q9UPV0 1460 aa6.77□□□□□ -1.33
MCF2-201ENST00000338585 PDS5BQ9NTI5 1447 aa6.77□□□□□ -1.33
MCF2-201ENST00000338585 KIF21AQ7Z4S6 1674 aa6.77□□□□□ -1.33
MCF2-201ENST00000338585 FGD5Q6ZNL6 1462 aa6.75□□□□□ -1.33
MCF2-201ENST00000338585 URB2Q14146 1524 aaKnown RBP6.75□□□□□ -1.33
MCF2-201ENST00000338585 TOPBP1Q92547 1522 aa6.75□□□□□ -1.33
MCF2-201ENST00000338585 DNMBPQ6XZF7 1577 aa6.75□□□□□ -1.33
MCF2-201ENST00000338585 EEA1Q15075 1411 aa6.74□□□□□ -1.33
MCF2-201ENST00000338585 CSRNP3Q8WYN3 585 aa6.74□□□□□ -1.33
MCF2-201ENST00000338585 RNF39Q9H2S5 420 aa6.72□□□□□ -1.33
MCF2-201ENST00000338585 POLA1P09884 1462 aaPredicted RBP6.72□□□□□ -1.33
MCF2-201ENST00000338585 RAD54L2Q9Y4B4 1467 aa6.71□□□□□ -1.33
MCF2-201ENST00000338585 CUX2O14529 1486 aa6.71□□□□□ -1.34
MCF2-201ENST00000338585 KIF27Q86VH2 1401 aa6.7□□□□□ -1.34
MCF2-201ENST00000338585 MRC2Q9UBG0 1479 aa6.7□□□□□ -1.34
MCF2-201ENST00000338585 ERCC6Q03468 1493 aa6.69□□□□□ -1.34
MCF2-201ENST00000338585 C1QBPQ07021 282 aaKnown RBP6.68□□□□□ -1.34
MCF2-201ENST00000338585 KIF21BO75037 1637 aa6.68□□□□□ -1.34
MCF2-201ENST00000338585 GOLGA3Q08378 1498 aa6.68□□□□□ -1.34
MCF2-201ENST00000338585 RAPGEF2Q9Y4G8 1499 aa6.68□□□□□ -1.34
MCF2-201ENST00000338585 ABCA10Q8WWZ4 1543 aa6.67□□□□□ -1.34
MCF2-201ENST00000338585 UBTFP17480 764 aaKnown RBP6.67□□□□□ -1.34
MCF2-201ENST00000338585 WDR62O43379 1518 aa6.66□□□□□ -1.34
MCF2-201ENST00000338585 PRXQ9BXM0 1461 aa6.66□□□□□ -1.34
MCF2-201ENST00000338585 IGF1RP08069 1367 aa6.66□□□□□ -1.34
MCF2-201ENST00000338585 TDRD9Q8NDG6 1382 aaKnown RBP6.65□□□□□ -1.34
MCF2-201ENST00000338585 WDR97A6NE52 1622 aa6.65□□□□□ -1.34
MCF2-201ENST00000338585 THOC2Q8NI27 1593 aaKnown RBP6.65□□□□□ -1.34
MCF2-201ENST00000338585 TNIKQ9UKE5 1360 aa6.65□□□□□ -1.34
MCF2-201ENST00000338585 TARBP1Q13395 1621 aaKnown RBP6.65□□□□□ -1.35
MCF2-201ENST00000338585 CEP162Q5TB80 1403 aa6.63□□□□□ -1.35
MCF2-201ENST00000338585 ERICH3Q5RHP9 1530 aa6.63□□□□□ -1.35
MCF2-201ENST00000338585 ABCA5Q8WWZ7 1642 aa6.63□□□□□ -1.35
MCF2-201ENST00000338585 GAPVD1Q14C86 1478 aa6.62□□□□□ -1.35
MCF2-201ENST00000338585 CARMIL1Q5VZK9 1371 aa6.62□□□□□ -1.35
MCF2-201ENST00000338585 ZNF608Q9ULD9 1512 aaPredicted RBP6.61□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms