RNA–Protein interactions for RNA: ENST00000321545.4

ZNF543-201, Transcript of zinc finger protein 543, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene ZNF543, Length 3,659 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF543-201ENST00000321545 NISCHQ9Y2I1 1504 aa23.47■■□□□ 1.35
ZNF543-201ENST00000321545 DCAF8L2P0C7V8 631 aa21.49■■□□□ 1.03
ZNF543-201ENST00000321545 SHROOM4Q9ULL8 1493 aa20.79■□□□□ 0.92
ZNF543-201ENST00000321545 SUPT5HO00267 1087 aaKnown RBP20.27■□□□□ 0.84
ZNF543-201ENST00000321545 ABCC9O60706 1549 aa20.06■□□□□ 0.8
ZNF543-201ENST00000321545 CCDC180Q9P1Z9 1646 aa19.74■□□□□ 0.75
ZNF543-201ENST00000321545 ZCCHC6Q5VYS8 1495 aaKnown RBP19.56■□□□□ 0.72
ZNF543-201ENST00000321545 PABPN1Q86U42 306 aaKnown RBP eCLIP19.43■□□□□ 0.7
ZNF543-201ENST00000321545 EHMT2Q96KQ7 1210 aa19.21■□□□□ 0.67
ZNF543-201ENST00000321545 SCRIBQ14160 1630 aa19.21■□□□□ 0.67
ZNF543-201ENST00000321545 FAM9AQ8IZU1 332 aaPredicted RBP18.96■□□□□ 0.63
ZNF543-201ENST00000321545 RB1CC1Q8TDY2 1594 aa18.79■□□□□ 0.6
ZNF543-201ENST00000321545 NACADO15069 1562 aa18.77■□□□□ 0.6
ZNF543-201ENST00000321545 DCAF1Q9Y4B6 1507 aa18.76■□□□□ 0.59
ZNF543-201ENST00000321545 TRIM41Q8WV44 630 aa18.7■□□□□ 0.58
ZNF543-201ENST00000321545 CHIC1Q5VXU3 224 aa18.69■□□□□ 0.58
ZNF543-201ENST00000321545 CECR2Q9BXF3 1484 aa18.63■□□□□ 0.57
ZNF543-201ENST00000321545 RSF1Q96T23 1441 aaPredicted RBP18.52■□□□□ 0.55
ZNF543-201ENST00000321545 LOC105371045A0A1W2PR82 267 aa18.5■□□□□ 0.55
ZNF543-201ENST00000321545 RANGAP1P46060 587 aaPredicted RBP18.45■□□□□ 0.54
ZNF543-201ENST00000321545 MYO15BQ96JP2 1530 aa18.38■□□□□ 0.53
ZNF543-201ENST00000321545 MROH2BQ7Z745 1585 aa18.35■□□□□ 0.53
ZNF543-201ENST00000321545 TTBK1Q5TCY1 1321 aaPredicted RBP18.34■□□□□ 0.53
ZNF543-201ENST00000321545 PPARGC1BQ86YN6 1023 aaKnown RBP18.19■□□□□ 0.5
ZNF543-201ENST00000321545 UBTFP17480 764 aaKnown RBP18.16■□□□□ 0.5
ZNF543-201ENST00000321545 WIZO95785 1651 aa18.14■□□□□ 0.49
ZNF543-201ENST00000321545 BAZ1AQ9NRL2 1556 aaPredicted RBP18.13■□□□□ 0.49
ZNF543-201ENST00000321545 PCGF6Q9BYE7 350 aa18.02■□□□□ 0.48
ZNF543-201ENST00000321545 BAZ1BQ9UIG0 1483 aaKnown RBP18.01■□□□□ 0.47
ZNF543-201ENST00000321545 BICRAQ9NZM4 1560 aa17.94■□□□□ 0.46
ZNF543-201ENST00000321545 SMARCA4P51532 1647 aa17.92■□□□□ 0.46
ZNF543-201ENST00000321545 CCDC88BA6NC98 1476 aa17.91■□□□□ 0.46
ZNF543-201ENST00000321545 UNC13AQ9UPW8 1703 aa17.89■□□□□ 0.46
ZNF543-201ENST00000321545 ATP1B4Q9UN42 357 aaPredicted RBP17.86■□□□□ 0.45
ZNF543-201ENST00000321545 ATAD2BQ9ULI0 1458 aa17.85■□□□□ 0.45
ZNF543-201ENST00000321545 DNAJC5BQ9UF47 199 aa17.81■□□□□ 0.44
ZNF543-201ENST00000321545 ABCC8Q09428 1581 aa17.78■□□□□ 0.44
ZNF543-201ENST00000321545 APLP2Q06481 763 aa17.75■□□□□ 0.43
ZNF543-201ENST00000321545 CSRNP3Q8WYN3 585 aa17.73■□□□□ 0.43
ZNF543-201ENST00000321545 TOP2AP11388 1531 aaKnown RBP17.73■□□□□ 0.43
ZNF543-201ENST00000321545 EIF4G1Q04637 1599 aaKnown RBP17.71■□□□□ 0.43
ZNF543-201ENST00000321545 SMARCA2P51531 1590 aa17.69■□□□□ 0.42
ZNF543-201ENST00000321545 WRNQ14191 1432 aaPredicted RBP eCLIP17.66■□□□□ 0.42
ZNF543-201ENST00000321545 SOGA1O94964 1423 aa17.6■□□□□ 0.41
ZNF543-201ENST00000321545 FBLN2P98095 1184 aa17.6■□□□□ 0.41
ZNF543-201ENST00000321545 P3H3Q8IVL6 736 aa17.6■□□□□ 0.41
ZNF543-201ENST00000321545 CC2D2AQ9P2K1 1620 aa17.5■□□□□ 0.39
ZNF543-201ENST00000321545 NCAPD3P42695 1498 aa17.48■□□□□ 0.39
ZNF543-201ENST00000321545 ARID3CA6NKF2 412 aa17.46■□□□□ 0.39
ZNF543-201ENST00000321545 RUSC2Q8N2Y8 1516 aa17.46■□□□□ 0.39
ZNF543-201ENST00000321545 CADPSQ9ULU8 1353 aa17.45■□□□□ 0.38
ZNF543-201ENST00000321545 ITGAEP38570 1179 aa17.44■□□□□ 0.38
ZNF543-201ENST00000321545 NESP48681 1621 aa17.42■□□□□ 0.38
ZNF543-201ENST00000321545 TRIM26Q12899 539 aaPredicted RBP17.42■□□□□ 0.38
ZNF543-201ENST00000321545 HNRNPUL2Q1KMD3 747 aaKnown RBP17.39■□□□□ 0.37
ZNF543-201ENST00000321545 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.38■□□□□ 0.37
ZNF543-201ENST00000321545 HRCP23327 699 aa17.37■□□□□ 0.37
ZNF543-201ENST00000321545 ERCC6Q03468 1493 aa17.31■□□□□ 0.36
ZNF543-201ENST00000321545 TDRD9Q8NDG6 1382 aaKnown RBP17.3■□□□□ 0.36
ZNF543-201ENST00000321545 CUX2O14529 1486 aa17.29■□□□□ 0.36
ZNF543-201ENST00000321545 CCER1Q8TC90 406 aaPredicted RBP17.28■□□□□ 0.36
ZNF543-201ENST00000321545 FANCD2Q9BXW9 1451 aa17.27■□□□□ 0.35
ZNF543-201ENST00000321545 KIF27Q86VH2 1401 aa17.24■□□□□ 0.35
ZNF543-201ENST00000321545 CEP162Q5TB80 1403 aa17.22■□□□□ 0.35
ZNF543-201ENST00000321545 HMGXB3Q12766 1538 aa17.21■□□□□ 0.35
ZNF543-201ENST00000321545 PDS5BQ9NTI5 1447 aa17.2■□□□□ 0.34
ZNF543-201ENST00000321545 SYNJ1O43426 1573 aa17.19■□□□□ 0.34
ZNF543-201ENST00000321545 PEG3Q9GZU2 1588 aa17.19■□□□□ 0.34
ZNF543-201ENST00000321545 CFTRP13569 1480 aa17.19■□□□□ 0.34
ZNF543-201ENST00000321545 CLIP1P30622 1438 aa17.17■□□□□ 0.34
ZNF543-201ENST00000321545 GOLGA3Q08378 1498 aa17.17■□□□□ 0.34
ZNF543-201ENST00000321545 RAD54L2Q9Y4B4 1467 aa17.17■□□□□ 0.34
ZNF543-201ENST00000321545 CHMP7Q8WUX9 453 aaPredicted RBP17.14■□□□□ 0.33
ZNF543-201ENST00000321545 CEP164Q9UPV0 1460 aa17.14■□□□□ 0.33
ZNF543-201ENST00000321545 EEA1Q15075 1411 aa17.13■□□□□ 0.33
ZNF543-201ENST00000321545 RAPGEF2Q9Y4G8 1499 aa17.12■□□□□ 0.33
ZNF543-201ENST00000321545 CARMIL1Q5VZK9 1371 aa17.11■□□□□ 0.33
ZNF543-201ENST00000321545 FAM50AQ14320 339 aaKnown RBP17.11■□□□□ 0.33
ZNF543-201ENST00000321545 FGD5Q6ZNL6 1462 aa17.1■□□□□ 0.33
ZNF543-201ENST00000321545 TNIKQ9UKE5 1360 aa17.09■□□□□ 0.33
ZNF543-201ENST00000321545 PELP1Q8IZL8 1130 aaKnown RBP17.08■□□□□ 0.32
ZNF543-201ENST00000321545 CUX1P39880 1505 aa17.06■□□□□ 0.32
ZNF543-201ENST00000321545 IGF1RP08069 1367 aa16.97■□□□□ 0.31
ZNF543-201ENST00000321545 AQRO60306 1485 aaKnown RBP eCLIP16.97■□□□□ 0.31
ZNF543-201ENST00000321545 TOPBP1Q92547 1522 aa16.92■□□□□ 0.3
ZNF543-201ENST00000321545 KANK4Q5T7N3 995 aaPredicted RBP16.91■□□□□ 0.3
ZNF543-201ENST00000321545 POLA1P09884 1462 aaPredicted RBP16.91■□□□□ 0.3
ZNF543-201ENST00000321545 TOP2BQ02880 1626 aa16.9■□□□□ 0.3
ZNF543-201ENST00000321545 ZNF777Q9ULD5 760 aaPredicted RBP16.88■□□□□ 0.29
ZNF543-201ENST00000321545 MYT1LQ9UL68 1186 aa16.84■□□□□ 0.29
ZNF543-201ENST00000321545 URB2Q14146 1524 aaKnown RBP16.83■□□□□ 0.29
ZNF543-201ENST00000321545 GAPVD1Q14C86 1478 aa16.83■□□□□ 0.28
ZNF543-201ENST00000321545 FHOD3Q2V2M9 1422 aa16.82■□□□□ 0.28
ZNF543-201ENST00000321545 CHIC2Q9UKJ5 165 aa16.8■□□□□ 0.28
ZNF543-201ENST00000321545 LAMC3Q9Y6N6 1575 aa16.77■□□□□ 0.28
ZNF543-201ENST00000321545 MTUS2Q5JR59 1369 aa16.76■□□□□ 0.27
ZNF543-201ENST00000321545 VPS8Q8N3P4 1428 aa16.76■□□□□ 0.27
ZNF543-201ENST00000321545 ZEB1P37275 1124 aaPredicted RBP16.75■□□□□ 0.27
ZNF543-201ENST00000321545 MRC2Q9UBG0 1479 aa16.75■□□□□ 0.27
ZNF543-201ENST00000321545 SCAF1Q9H7N4 1312 aaKnown RBP16.74■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms