RNA–Protein interactions for RNA: ENST00000315962.8

TRIM55-202, Transcript of tripartite motif containing 55, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM55, Length 2,914 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55-202ENST00000315962 NISCHQ9Y2I1 1504 aa16.28■□□□□ 0.2
TRIM55-202ENST00000315962 DCAF8L2P0C7V8 631 aa14.1□□□□□ -0.15
TRIM55-202ENST00000315962 SHROOM4Q9ULL8 1493 aa14.02□□□□□ -0.16
TRIM55-202ENST00000315962 CCDC180Q9P1Z9 1646 aa13.78□□□□□ -0.2
TRIM55-202ENST00000315962 ZCCHC6Q5VYS8 1495 aaKnown RBP13.65□□□□□ -0.22
TRIM55-202ENST00000315962 SUPT5HO00267 1087 aaKnown RBP13.6□□□□□ -0.23
TRIM55-202ENST00000315962 ABCC9O60706 1549 aa13.49□□□□□ -0.25
TRIM55-202ENST00000315962 DCAF1Q9Y4B6 1507 aa13.17□□□□□ -0.3
TRIM55-202ENST00000315962 SCRIBQ14160 1630 aa13.16□□□□□ -0.3
TRIM55-202ENST00000315962 PABPN1Q86U42 306 aaKnown RBP eCLIP12.98□□□□□ -0.33
TRIM55-202ENST00000315962 NACADO15069 1562 aa12.93□□□□□ -0.34
TRIM55-202ENST00000315962 MYO15BQ96JP2 1530 aa12.89□□□□□ -0.35
TRIM55-202ENST00000315962 CHIC1Q5VXU3 224 aa12.87□□□□□ -0.35
TRIM55-202ENST00000315962 CECR2Q9BXF3 1484 aa12.87□□□□□ -0.35
TRIM55-202ENST00000315962 RB1CC1Q8TDY2 1594 aa12.84□□□□□ -0.35
TRIM55-202ENST00000315962 RSF1Q96T23 1441 aaPredicted RBP12.84□□□□□ -0.35
TRIM55-202ENST00000315962 MROH2BQ7Z745 1585 aa12.72□□□□□ -0.37
TRIM55-202ENST00000315962 EHMT2Q96KQ7 1210 aa12.7□□□□□ -0.38
TRIM55-202ENST00000315962 LOC105371045A0A1W2PR82 267 aa12.65□□□□□ -0.38
TRIM55-202ENST00000315962 FAM9AQ8IZU1 332 aaPredicted RBP12.64□□□□□ -0.39
TRIM55-202ENST00000315962 WIZO95785 1651 aa12.61□□□□□ -0.39
TRIM55-202ENST00000315962 TRIM41Q8WV44 630 aa12.58□□□□□ -0.39
TRIM55-202ENST00000315962 UNC13AQ9UPW8 1703 aa12.57□□□□□ -0.4
TRIM55-202ENST00000315962 BICRAQ9NZM4 1560 aa12.53□□□□□ -0.4
TRIM55-202ENST00000315962 BAZ1AQ9NRL2 1556 aaPredicted RBP12.49□□□□□ -0.41
TRIM55-202ENST00000315962 PCGF6Q9BYE7 350 aa12.45□□□□□ -0.42
TRIM55-202ENST00000315962 PPARGC1BQ86YN6 1023 aaKnown RBP12.43□□□□□ -0.42
TRIM55-202ENST00000315962 SMARCA4P51532 1647 aa12.43□□□□□ -0.42
TRIM55-202ENST00000315962 HRCP23327 699 aa12.39□□□□□ -0.43
TRIM55-202ENST00000315962 CCDC88BA6NC98 1476 aa12.38□□□□□ -0.43
TRIM55-202ENST00000315962 TOP2AP11388 1531 aaKnown RBP12.3□□□□□ -0.44
TRIM55-202ENST00000315962 ABCC8Q09428 1581 aa12.29□□□□□ -0.44
TRIM55-202ENST00000315962 ATAD2BQ9ULI0 1458 aa12.28□□□□□ -0.44
TRIM55-202ENST00000315962 SMARCA2P51531 1590 aa12.26□□□□□ -0.45
TRIM55-202ENST00000315962 BAZ1BQ9UIG0 1483 aaKnown RBP12.25□□□□□ -0.45
TRIM55-202ENST00000315962 EIF4G1Q04637 1599 aaKnown RBP12.17□□□□□ -0.46
TRIM55-202ENST00000315962 RANGAP1P46060 587 aaPredicted RBP12.15□□□□□ -0.46
TRIM55-202ENST00000315962 SOGA1O94964 1423 aa12.15□□□□□ -0.46
TRIM55-202ENST00000315962 TTBK1Q5TCY1 1321 aaPredicted RBP12.14□□□□□ -0.47
TRIM55-202ENST00000315962 DNAJC5BQ9UF47 199 aa12.13□□□□□ -0.47
TRIM55-202ENST00000315962 RUSC2Q8N2Y8 1516 aa12.11□□□□□ -0.47
TRIM55-202ENST00000315962 PEG3Q9GZU2 1588 aa12.1□□□□□ -0.47
TRIM55-202ENST00000315962 UBTFP17480 764 aaKnown RBP12.09□□□□□ -0.47
TRIM55-202ENST00000315962 WRNQ14191 1432 aaPredicted RBP eCLIP12.07□□□□□ -0.48
TRIM55-202ENST00000315962 NCAPD3P42695 1498 aa12.05□□□□□ -0.48
TRIM55-202ENST00000315962 CSRNP3Q8WYN3 585 aa12.04□□□□□ -0.48
TRIM55-202ENST00000315962 CC2D2AQ9P2K1 1620 aa11.98□□□□□ -0.49
TRIM55-202ENST00000315962 SYNJ1O43426 1573 aa11.98□□□□□ -0.49
TRIM55-202ENST00000315962 TRIM26Q12899 539 aaPredicted RBP11.93□□□□□ -0.5
TRIM55-202ENST00000315962 HMGXB3Q12766 1538 aa11.92□□□□□ -0.5
TRIM55-202ENST00000315962 NESP48681 1621 aa11.89□□□□□ -0.51
TRIM55-202ENST00000315962 CADPSQ9ULU8 1353 aa11.88□□□□□ -0.51
TRIM55-202ENST00000315962 CFTRP13569 1480 aa11.88□□□□□ -0.51
TRIM55-202ENST00000315962 CEP162Q5TB80 1403 aa11.85□□□□□ -0.51
TRIM55-202ENST00000315962 CUX1P39880 1505 aa11.83□□□□□ -0.52
TRIM55-202ENST00000315962 RAPGEF2Q9Y4G8 1499 aa11.82□□□□□ -0.52
TRIM55-202ENST00000315962 TNIKQ9UKE5 1360 aa11.79□□□□□ -0.52
TRIM55-202ENST00000315962 EEA1Q15075 1411 aa11.77□□□□□ -0.52
TRIM55-202ENST00000315962 TOP2BQ02880 1626 aa11.77□□□□□ -0.52
TRIM55-202ENST00000315962 GOLGA3Q08378 1498 aa11.77□□□□□ -0.53
TRIM55-202ENST00000315962 FANCD2Q9BXW9 1451 aa11.77□□□□□ -0.53
TRIM55-202ENST00000315962 CUX2O14529 1486 aa11.73□□□□□ -0.53
TRIM55-202ENST00000315962 CEP164Q9UPV0 1460 aa11.73□□□□□ -0.53
TRIM55-202ENST00000315962 P3H3Q8IVL6 736 aa11.73□□□□□ -0.53
TRIM55-202ENST00000315962 RAD54L2Q9Y4B4 1467 aa11.73□□□□□ -0.53
TRIM55-202ENST00000315962 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.72□□□□□ -0.53
TRIM55-202ENST00000315962 KIF27Q86VH2 1401 aa11.72□□□□□ -0.53
TRIM55-202ENST00000315962 CLIP1P30622 1438 aa11.71□□□□□ -0.53
TRIM55-202ENST00000315962 FGD5Q6ZNL6 1462 aa11.71□□□□□ -0.54
TRIM55-202ENST00000315962 SCAF1Q9H7N4 1312 aaKnown RBP11.71□□□□□ -0.54
TRIM55-202ENST00000315962 ATP1B4Q9UN42 357 aaPredicted RBP11.68□□□□□ -0.54
TRIM55-202ENST00000315962 TDRD9Q8NDG6 1382 aaKnown RBP11.68□□□□□ -0.54
TRIM55-202ENST00000315962 IGF1RP08069 1367 aa11.68□□□□□ -0.54
TRIM55-202ENST00000315962 APLP2Q06481 763 aa11.67□□□□□ -0.54
TRIM55-202ENST00000315962 BIVM-ERCC5R4GMW8 1640 aa11.66□□□□□ -0.54
TRIM55-202ENST00000315962 HNRNPUL2Q1KMD3 747 aaKnown RBP11.66□□□□□ -0.54
TRIM55-202ENST00000315962 PRXQ9BXM0 1461 aa11.63□□□□□ -0.55
TRIM55-202ENST00000315962 CARMIL1Q5VZK9 1371 aa11.62□□□□□ -0.55
TRIM55-202ENST00000315962 TOPBP1Q92547 1522 aa11.61□□□□□ -0.55
TRIM55-202ENST00000315962 POLA1P09884 1462 aaPredicted RBP11.61□□□□□ -0.55
TRIM55-202ENST00000315962 KANK4Q5T7N3 995 aaPredicted RBP11.6□□□□□ -0.55
TRIM55-202ENST00000315962 KIF21BO75037 1637 aa11.6□□□□□ -0.55
TRIM55-202ENST00000315962 URB2Q14146 1524 aaKnown RBP11.6□□□□□ -0.55
TRIM55-202ENST00000315962 CCER1Q8TC90 406 aaPredicted RBP11.6□□□□□ -0.55
TRIM55-202ENST00000315962 PDS5BQ9NTI5 1447 aa11.59□□□□□ -0.55
TRIM55-202ENST00000315962 ZEB1P37275 1124 aaPredicted RBP11.57□□□□□ -0.56
TRIM55-202ENST00000315962 ITGAEP38570 1179 aa11.56□□□□□ -0.56
TRIM55-202ENST00000315962 VPS8Q8N3P4 1428 aa11.55□□□□□ -0.56
TRIM55-202ENST00000315962 ARAP1Q96P48 1450 aa11.54□□□□□ -0.56
TRIM55-202ENST00000315962 ARID3CA6NKF2 412 aa11.53□□□□□ -0.56
TRIM55-202ENST00000315962 DNMBPQ6XZF7 1577 aa11.52□□□□□ -0.56
TRIM55-202ENST00000315962 LAMC3Q9Y6N6 1575 aa11.52□□□□□ -0.56
TRIM55-202ENST00000315962 AQRO60306 1485 aaKnown RBP eCLIP11.52□□□□□ -0.56
TRIM55-202ENST00000315962 FBLN2P98095 1184 aa11.51□□□□□ -0.57
TRIM55-202ENST00000315962 PELP1Q8IZL8 1130 aaKnown RBP11.49□□□□□ -0.57
TRIM55-202ENST00000315962 PRDM2Q13029 1718 aa11.49□□□□□ -0.57
TRIM55-202ENST00000315962 KIF21AQ7Z4S6 1674 aa11.49□□□□□ -0.57
TRIM55-202ENST00000315962 NEUROD1Q13562 356 aa11.49□□□□□ -0.57
TRIM55-202ENST00000315962 ARHGAP35Q9NRY4 1499 aa11.48□□□□□ -0.57
TRIM55-202ENST00000315962 ERICH3Q5RHP9 1530 aa11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 84.8 ms