RNA–Protein interactions for RNA: ENST00000315571.5

LDLRAD3-201, Transcript of low density lipoprotein receptor class A domain containing 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LDLRAD3, Length 3,798 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRAD3-201ENST00000315571 NISCHQ9Y2I1 1504 aa24.72■■□□□ 1.55
LDLRAD3-201ENST00000315571 CCDC180Q9P1Z9 1646 aa21.67■■□□□ 1.06
LDLRAD3-201ENST00000315571 ABCC9O60706 1549 aa20.88■□□□□ 0.93
LDLRAD3-201ENST00000315571 DCAF8L2P0C7V8 631 aa20.69■□□□□ 0.9
LDLRAD3-201ENST00000315571 ZCCHC6Q5VYS8 1495 aaKnown RBP20.68■□□□□ 0.9
LDLRAD3-201ENST00000315571 DCAF1Q9Y4B6 1507 aa20.41■□□□□ 0.86
LDLRAD3-201ENST00000315571 NACADO15069 1562 aa20.3■□□□□ 0.84
LDLRAD3-201ENST00000315571 MYO15BQ96JP2 1530 aa20.29■□□□□ 0.84
LDLRAD3-201ENST00000315571 RB1CC1Q8TDY2 1594 aa20.23■□□□□ 0.83
LDLRAD3-201ENST00000315571 SHROOM4Q9ULL8 1493 aa20.02■□□□□ 0.8
LDLRAD3-201ENST00000315571 PELP1Q8IZL8 1130 aaKnown RBP19.97■□□□□ 0.79
LDLRAD3-201ENST00000315571 SCRIBQ14160 1630 aa19.93■□□□□ 0.78
LDLRAD3-201ENST00000315571 UNC13AQ9UPW8 1703 aa19.66■□□□□ 0.74
LDLRAD3-201ENST00000315571 PABPN1Q86U42 306 aaKnown RBP eCLIP19.65■□□□□ 0.74
LDLRAD3-201ENST00000315571 BICRAQ9NZM4 1560 aa19.54■□□□□ 0.72
LDLRAD3-201ENST00000315571 MYT1Q01538 1121 aa19.48■□□□□ 0.71
LDLRAD3-201ENST00000315571 HRCP23327 699 aa19.25■□□□□ 0.67
LDLRAD3-201ENST00000315571 CECR2Q9BXF3 1484 aa19.23■□□□□ 0.67
LDLRAD3-201ENST00000315571 BAZ1AQ9NRL2 1556 aaPredicted RBP19.13■□□□□ 0.65
LDLRAD3-201ENST00000315571 SUPT5HO00267 1087 aaKnown RBP19.13■□□□□ 0.65
LDLRAD3-201ENST00000315571 PPARGC1BQ86YN6 1023 aaKnown RBP19.1■□□□□ 0.65
LDLRAD3-201ENST00000315571 MROH2BQ7Z745 1585 aa19.08■□□□□ 0.64
LDLRAD3-201ENST00000315571 RSF1Q96T23 1441 aaPredicted RBP19.06■□□□□ 0.64
LDLRAD3-201ENST00000315571 SMARCA4P51532 1647 aa19.05■□□□□ 0.64
LDLRAD3-201ENST00000315571 EIF4G1Q04637 1599 aaKnown RBP19.03■□□□□ 0.64
LDLRAD3-201ENST00000315571 PCGF6Q9BYE7 350 aa18.97■□□□□ 0.63
LDLRAD3-201ENST00000315571 WIZO95785 1651 aa18.88■□□□□ 0.61
LDLRAD3-201ENST00000315571 ATAD2BQ9ULI0 1458 aa18.85■□□□□ 0.61
LDLRAD3-201ENST00000315571 SMARCA2P51531 1590 aa18.85■□□□□ 0.61
LDLRAD3-201ENST00000315571 CC2D2AQ9P2K1 1620 aa18.83■□□□□ 0.6
LDLRAD3-201ENST00000315571 PEG3Q9GZU2 1588 aa18.8■□□□□ 0.6
LDLRAD3-201ENST00000315571 BAZ1BQ9UIG0 1483 aaKnown RBP18.77■□□□□ 0.59
LDLRAD3-201ENST00000315571 NCAPD3P42695 1498 aa18.74■□□□□ 0.59
LDLRAD3-201ENST00000315571 TOP2AP11388 1531 aaKnown RBP18.71■□□□□ 0.59
LDLRAD3-201ENST00000315571 HMGXB3Q12766 1538 aa18.68■□□□□ 0.58
LDLRAD3-201ENST00000315571 DNAJC5BQ9UF47 199 aa18.67■□□□□ 0.58
LDLRAD3-201ENST00000315571 SCAF1Q9H7N4 1312 aaKnown RBP18.66■□□□□ 0.58
LDLRAD3-201ENST00000315571 CCDC88BA6NC98 1476 aa18.52■□□□□ 0.55
LDLRAD3-201ENST00000315571 CADPSQ9ULU8 1353 aa18.28■□□□□ 0.52
LDLRAD3-201ENST00000315571 TTBK1Q5TCY1 1321 aaPredicted RBP18.27■□□□□ 0.52
LDLRAD3-201ENST00000315571 CFTRP13569 1480 aa18.24■□□□□ 0.51
LDLRAD3-201ENST00000315571 GTF3C3Q9Y5Q9 886 aa18.21■□□□□ 0.51
LDLRAD3-201ENST00000315571 NESP48681 1621 aa18.19■□□□□ 0.5
LDLRAD3-201ENST00000315571 CENPBP07199 599 aaPredicted RBP18.18■□□□□ 0.5
LDLRAD3-201ENST00000315571 LAMC3Q9Y6N6 1575 aa18.16■□□□□ 0.5
LDLRAD3-201ENST00000315571 BCL11AQ9H165 835 aa18.09■□□□□ 0.49
LDLRAD3-201ENST00000315571 PDS5BQ9NTI5 1447 aa18.09■□□□□ 0.49
LDLRAD3-201ENST00000315571 ACIN1Q9UKV3 1341 aaKnown RBP18.09■□□□□ 0.49
LDLRAD3-201ENST00000315571 CHIC1Q5VXU3 224 aa18.07■□□□□ 0.48
LDLRAD3-201ENST00000315571 FANCD2Q9BXW9 1451 aa18.07■□□□□ 0.48
LDLRAD3-201ENST00000315571 PRDM2Q13029 1718 aa18.03■□□□□ 0.48
LDLRAD3-201ENST00000315571 ZEB1P37275 1124 aaPredicted RBP18.02■□□□□ 0.48
LDLRAD3-201ENST00000315571 TRIM41Q8WV44 630 aa18.02■□□□□ 0.47
LDLRAD3-201ENST00000315571 ABCC8Q09428 1581 aa18.02■□□□□ 0.47
LDLRAD3-201ENST00000315571 NEUROD1Q13562 356 aa18.01■□□□□ 0.47
LDLRAD3-201ENST00000315571 CEP164Q9UPV0 1460 aa18■□□□□ 0.47
LDLRAD3-201ENST00000315571 WRNQ14191 1432 aaPredicted RBP eCLIP17.99■□□□□ 0.47
LDLRAD3-201ENST00000315571 ERCC6Q03468 1493 aa17.99■□□□□ 0.47
LDLRAD3-201ENST00000315571 KIF21AQ7Z4S6 1674 aa17.91■□□□□ 0.46
LDLRAD3-201ENST00000315571 SYNJ1O43426 1573 aa17.86■□□□□ 0.45
LDLRAD3-201ENST00000315571 CUX1P39880 1505 aa17.86■□□□□ 0.45
LDLRAD3-201ENST00000315571 YTHDC1Q96MU7 727 aaKnown RBP17.85■□□□□ 0.45
LDLRAD3-201ENST00000315571 MRC2Q9UBG0 1479 aa17.85■□□□□ 0.45
LDLRAD3-201ENST00000315571 PRKCSHP14314 528 aaPredicted RBP17.85■□□□□ 0.45
LDLRAD3-201ENST00000315571 URB2Q14146 1524 aaKnown RBP17.82■□□□□ 0.44
LDLRAD3-201ENST00000315571 TOP2BQ02880 1626 aa17.82■□□□□ 0.44
LDLRAD3-201ENST00000315571 DNMBPQ6XZF7 1577 aa17.82■□□□□ 0.44
LDLRAD3-201ENST00000315571 TRIM26Q12899 539 aaPredicted RBP17.81■□□□□ 0.44
LDLRAD3-201ENST00000315571 TOPBP1Q92547 1522 aa17.81■□□□□ 0.44
LDLRAD3-201ENST00000315571 FAM9AQ8IZU1 332 aaPredicted RBP17.79■□□□□ 0.44
LDLRAD3-201ENST00000315571 BIVM-ERCC5R4GMW8 1640 aa17.78■□□□□ 0.44
LDLRAD3-201ENST00000315571 FGD5Q6ZNL6 1462 aa17.75■□□□□ 0.43
LDLRAD3-201ENST00000315571 ERICH6Q7L0X2 663 aa17.74■□□□□ 0.43
LDLRAD3-201ENST00000315571 WDR62O43379 1518 aa17.72■□□□□ 0.43
LDLRAD3-201ENST00000315571 THOC2Q8NI27 1593 aaKnown RBP17.71■□□□□ 0.43
LDLRAD3-201ENST00000315571 POLA1P09884 1462 aaPredicted RBP17.7■□□□□ 0.42
LDLRAD3-201ENST00000315571 SOGA1O94964 1423 aa17.68■□□□□ 0.42
LDLRAD3-201ENST00000315571 RAD54L2Q9Y4B4 1467 aa17.65■□□□□ 0.42
LDLRAD3-201ENST00000315571 CUX2O14529 1486 aa17.61■□□□□ 0.41
LDLRAD3-201ENST00000315571 KIF27Q86VH2 1401 aa17.58■□□□□ 0.41
LDLRAD3-201ENST00000315571 IFT140Q96RY7 1462 aa17.58■□□□□ 0.41
LDLRAD3-201ENST00000315571 DIEXFQ68CQ4 756 aaKnown RBP17.57■□□□□ 0.4
LDLRAD3-201ENST00000315571 ABCA10Q8WWZ4 1543 aa17.57■□□□□ 0.4
LDLRAD3-201ENST00000315571 EEA1Q15075 1411 aa17.57■□□□□ 0.4
LDLRAD3-201ENST00000315571 LOC105371045A0A1W2PR82 267 aa17.56■□□□□ 0.4
LDLRAD3-201ENST00000315571 RUSC2Q8N2Y8 1516 aa17.56■□□□□ 0.4
LDLRAD3-201ENST00000315571 TDRD9Q8NDG6 1382 aaKnown RBP17.55■□□□□ 0.4
LDLRAD3-201ENST00000315571 ANP32EQ9BTT0 268 aa17.54■□□□□ 0.4
LDLRAD3-201ENST00000315571 CSRNP3Q8WYN3 585 aa17.52■□□□□ 0.4
LDLRAD3-201ENST00000315571 TARBP1Q13395 1621 aaKnown RBP17.52■□□□□ 0.4
LDLRAD3-201ENST00000315571 EHMT2Q96KQ7 1210 aa17.47■□□□□ 0.39
LDLRAD3-201ENST00000315571 ZNF608Q9ULD9 1512 aaPredicted RBP17.47■□□□□ 0.39
LDLRAD3-201ENST00000315571 GAPVD1Q14C86 1478 aa17.47■□□□□ 0.39
LDLRAD3-201ENST00000315571 AQRO60306 1485 aaKnown RBP eCLIP17.47■□□□□ 0.39
LDLRAD3-201ENST00000315571 WDR97A6NE52 1622 aa17.46■□□□□ 0.39
LDLRAD3-201ENST00000315571 CCER1Q8TC90 406 aaPredicted RBP17.46■□□□□ 0.39
LDLRAD3-201ENST00000315571 IGF1RP08069 1367 aa17.42■□□□□ 0.38
LDLRAD3-201ENST00000315571 ABCA5Q8WWZ7 1642 aa17.41■□□□□ 0.38
LDLRAD3-201ENST00000315571 GRIN2BQ13224 1484 aa17.39■□□□□ 0.37
LDLRAD3-201ENST00000315571 EIF4G3O43432 1585 aaKnown RBP17.39■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms