RNA–Protein interactions for RNA: ENST00000311659.4

UBQLN3-201, Transcript of ubiquilin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UBQLN3, Length 2,407 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBQLN3-201ENST00000311659 NISCHQ9Y2I1 1504 aa17.49■□□□□ 0.39
UBQLN3-201ENST00000311659 CCDC180Q9P1Z9 1646 aa15.31■□□□□ 0.04
UBQLN3-201ENST00000311659 ZCCHC6Q5VYS8 1495 aaKnown RBP14.67□□□□□ -0.06
UBQLN3-201ENST00000311659 ABCC9O60706 1549 aa14.57□□□□□ -0.08
UBQLN3-201ENST00000311659 SHROOM4Q9ULL8 1493 aa14.56□□□□□ -0.08
UBQLN3-201ENST00000311659 DCAF8L2P0C7V8 631 aa14.49□□□□□ -0.09
UBQLN3-201ENST00000311659 DCAF1Q9Y4B6 1507 aa14.45□□□□□ -0.1
UBQLN3-201ENST00000311659 SUPT5HO00267 1087 aaKnown RBP14.37□□□□□ -0.11
UBQLN3-201ENST00000311659 MYO15BQ96JP2 1530 aa14.32□□□□□ -0.12
UBQLN3-201ENST00000311659 NACADO15069 1562 aa14.28□□□□□ -0.12
UBQLN3-201ENST00000311659 HRCP23327 699 aa14.25□□□□□ -0.13
UBQLN3-201ENST00000311659 RB1CC1Q8TDY2 1594 aa14.19□□□□□ -0.14
UBQLN3-201ENST00000311659 CHIC1Q5VXU3 224 aa14.19□□□□□ -0.14
UBQLN3-201ENST00000311659 SCRIBQ14160 1630 aa14.08□□□□□ -0.16
UBQLN3-201ENST00000311659 PCGF6Q9BYE7 350 aa13.99□□□□□ -0.17
UBQLN3-201ENST00000311659 UNC13AQ9UPW8 1703 aa13.92□□□□□ -0.18
UBQLN3-201ENST00000311659 PPARGC1BQ86YN6 1023 aaKnown RBP13.88□□□□□ -0.19
UBQLN3-201ENST00000311659 BICRAQ9NZM4 1560 aa13.76□□□□□ -0.21
UBQLN3-201ENST00000311659 LOC105371045A0A1W2PR82 267 aa13.74□□□□□ -0.21
UBQLN3-201ENST00000311659 PABPN1Q86U42 306 aaKnown RBP eCLIP13.71□□□□□ -0.21
UBQLN3-201ENST00000311659 TRIM26Q12899 539 aaPredicted RBP13.69□□□□□ -0.22
UBQLN3-201ENST00000311659 CECR2Q9BXF3 1484 aa13.6□□□□□ -0.23
UBQLN3-201ENST00000311659 RSF1Q96T23 1441 aaPredicted RBP13.52□□□□□ -0.24
UBQLN3-201ENST00000311659 BAZ1AQ9NRL2 1556 aaPredicted RBP13.52□□□□□ -0.25
UBQLN3-201ENST00000311659 MROH2BQ7Z745 1585 aa13.51□□□□□ -0.25
UBQLN3-201ENST00000311659 ZEB1P37275 1124 aaPredicted RBP13.51□□□□□ -0.25
UBQLN3-201ENST00000311659 SMARCA4P51532 1647 aa13.48□□□□□ -0.25
UBQLN3-201ENST00000311659 WIZO95785 1651 aa13.41□□□□□ -0.26
UBQLN3-201ENST00000311659 TRIM41Q8WV44 630 aa13.38□□□□□ -0.27
UBQLN3-201ENST00000311659 PELP1Q8IZL8 1130 aaKnown RBP13.37□□□□□ -0.27
UBQLN3-201ENST00000311659 EIF4G1Q04637 1599 aaKnown RBP13.36□□□□□ -0.27
UBQLN3-201ENST00000311659 SCAF1Q9H7N4 1312 aaKnown RBP13.31□□□□□ -0.28
UBQLN3-201ENST00000311659 PEG3Q9GZU2 1588 aa13.31□□□□□ -0.28
UBQLN3-201ENST00000311659 ATAD2BQ9ULI0 1458 aa13.27□□□□□ -0.28
UBQLN3-201ENST00000311659 SMARCA2P51531 1590 aa13.27□□□□□ -0.29
UBQLN3-201ENST00000311659 FAM9AQ8IZU1 332 aaPredicted RBP13.25□□□□□ -0.29
UBQLN3-201ENST00000311659 TOP2AP11388 1531 aaKnown RBP13.25□□□□□ -0.29
UBQLN3-201ENST00000311659 BAZ1BQ9UIG0 1483 aaKnown RBP13.2□□□□□ -0.3
UBQLN3-201ENST00000311659 CC2D2AQ9P2K1 1620 aa13.19□□□□□ -0.3
UBQLN3-201ENST00000311659 NCAPD3P42695 1498 aa13.17□□□□□ -0.3
UBQLN3-201ENST00000311659 HMGXB3Q12766 1538 aa13.15□□□□□ -0.3
UBQLN3-201ENST00000311659 DNAJC5Q9H3Z4 198 aa13.15□□□□□ -0.3
UBQLN3-201ENST00000311659 CCDC88BA6NC98 1476 aa13.11□□□□□ -0.31
UBQLN3-201ENST00000311659 EHMT2Q96KQ7 1210 aa13.1□□□□□ -0.31
UBQLN3-201ENST00000311659 ACIN1Q9UKV3 1341 aaKnown RBP13.07□□□□□ -0.32
UBQLN3-201ENST00000311659 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.05□□□□□ -0.32
UBQLN3-201ENST00000311659 WRNQ14191 1432 aaPredicted RBP eCLIP13.05□□□□□ -0.32
UBQLN3-201ENST00000311659 NEUROD1Q13562 356 aa13.02□□□□□ -0.32
UBQLN3-201ENST00000311659 CCER1Q8TC90 406 aaPredicted RBP13.02□□□□□ -0.33
UBQLN3-201ENST00000311659 ABCC8Q09428 1581 aa12.96□□□□□ -0.33
UBQLN3-201ENST00000311659 MYT1Q01538 1121 aa12.96□□□□□ -0.33
UBQLN3-201ENST00000311659 DIEXFQ68CQ4 756 aaKnown RBP12.96□□□□□ -0.34
UBQLN3-201ENST00000311659 DNAJC5BQ9UF47 199 aa12.94□□□□□ -0.34
UBQLN3-201ENST00000311659 CEP162Q5TB80 1403 aa12.94□□□□□ -0.34
UBQLN3-201ENST00000311659 CENPBP07199 599 aaPredicted RBP12.9□□□□□ -0.34
UBQLN3-201ENST00000311659 GTF3C3Q9Y5Q9 886 aa12.9□□□□□ -0.34
UBQLN3-201ENST00000311659 TNIKQ9UKE5 1360 aa12.9□□□□□ -0.35
UBQLN3-201ENST00000311659 SOGA1O94964 1423 aa12.86□□□□□ -0.35
UBQLN3-201ENST00000311659 EEA1Q15075 1411 aa12.86□□□□□ -0.35
UBQLN3-201ENST00000311659 CFTRP13569 1480 aa12.85□□□□□ -0.35
UBQLN3-201ENST00000311659 CADPSQ9ULU8 1353 aa12.83□□□□□ -0.36
UBQLN3-201ENST00000311659 PRDM2Q13029 1718 aa12.81□□□□□ -0.36
UBQLN3-201ENST00000311659 RUSC2Q8N2Y8 1516 aa12.81□□□□□ -0.36
UBQLN3-201ENST00000311659 ZNF316A6NFI3 1004 aaPredicted RBP12.79□□□□□ -0.36
UBQLN3-201ENST00000311659 GOLGA3Q08378 1498 aa12.78□□□□□ -0.36
UBQLN3-201ENST00000311659 TTBK1Q5TCY1 1321 aaPredicted RBP12.77□□□□□ -0.36
UBQLN3-201ENST00000311659 NESP48681 1621 aa12.76□□□□□ -0.37
UBQLN3-201ENST00000311659 CSRNP3Q8WYN3 585 aa12.76□□□□□ -0.37
UBQLN3-201ENST00000311659 LAMC3Q9Y6N6 1575 aa12.75□□□□□ -0.37
UBQLN3-201ENST00000311659 KIF21BO75037 1637 aa12.74□□□□□ -0.37
UBQLN3-201ENST00000311659 SYNJ1O43426 1573 aa12.7□□□□□ -0.38
UBQLN3-201ENST00000311659 FANCD2Q9BXW9 1451 aa12.69□□□□□ -0.38
UBQLN3-201ENST00000311659 UBTFP17480 764 aaKnown RBP12.68□□□□□ -0.38
UBQLN3-201ENST00000311659 CEP164Q9UPV0 1460 aa12.68□□□□□ -0.38
UBQLN3-201ENST00000311659 TOP2BQ02880 1626 aa12.65□□□□□ -0.38
UBQLN3-201ENST00000311659 MIER1Q8N108 512 aa12.65□□□□□ -0.38
UBQLN3-201ENST00000311659 PDS5BQ9NTI5 1447 aa12.65□□□□□ -0.38
UBQLN3-201ENST00000311659 CUX1P39880 1505 aa12.65□□□□□ -0.38
UBQLN3-201ENST00000311659 BIVM-ERCC5R4GMW8 1640 aa12.64□□□□□ -0.39
UBQLN3-201ENST00000311659 VPS8Q8N3P4 1428 aa12.64□□□□□ -0.39
UBQLN3-201ENST00000311659 KIF21AQ7Z4S6 1674 aa12.62□□□□□ -0.39
UBQLN3-201ENST00000311659 CLIP1P30622 1438 aa12.62□□□□□ -0.39
UBQLN3-201ENST00000311659 YTHDC1Q96MU7 727 aaKnown RBP12.62□□□□□ -0.39
UBQLN3-201ENST00000311659 HNRNPUL2Q1KMD3 747 aaKnown RBP12.58□□□□□ -0.4
UBQLN3-201ENST00000311659 DNMBPQ6XZF7 1577 aa12.56□□□□□ -0.4
UBQLN3-201ENST00000311659 RAPGEF2Q9Y4G8 1499 aa12.55□□□□□ -0.4
UBQLN3-201ENST00000311659 TOPBP1Q92547 1522 aa12.55□□□□□ -0.4
UBQLN3-201ENST00000311659 URB2Q14146 1524 aaKnown RBP12.54□□□□□ -0.4
UBQLN3-201ENST00000311659 FGD5Q6ZNL6 1462 aa12.52□□□□□ -0.41
UBQLN3-201ENST00000311659 ERCC6Q03468 1493 aa12.51□□□□□ -0.41
UBQLN3-201ENST00000311659 CLSPNQ9HAW4 1339 aa12.51□□□□□ -0.41
UBQLN3-201ENST00000311659 MRC2Q9UBG0 1479 aa12.49□□□□□ -0.41
UBQLN3-201ENST00000311659 DHX57Q6P158 1386 aaKnown RBP12.49□□□□□ -0.41
UBQLN3-201ENST00000311659 POLA1P09884 1462 aaPredicted RBP12.48□□□□□ -0.41
UBQLN3-201ENST00000311659 ERICH3Q5RHP9 1530 aa12.47□□□□□ -0.41
UBQLN3-201ENST00000311659 ARAP1Q96P48 1450 aa12.44□□□□□ -0.42
UBQLN3-201ENST00000311659 WDR62O43379 1518 aa12.44□□□□□ -0.42
UBQLN3-201ENST00000311659 APLP2Q06481 763 aa12.44□□□□□ -0.42
UBQLN3-201ENST00000311659 RAD54L2Q9Y4B4 1467 aa12.43□□□□□ -0.42
UBQLN3-201ENST00000311659 THOC2Q8NI27 1593 aaKnown RBP12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms