RNA–Protein interactions for RNA: ENST00000309660.9

PTPN2-201, Transcript of protein tyrosine phosphatase, non-receptor type 2, humanhuman

TSL 1 (best) BASIC

Gene PTPN2, Length 3,467 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN2-201ENST00000309660 NISCHQ9Y2I1 1504 aa24.03■■□□□ 1.44
PTPN2-201ENST00000309660 SHROOM4Q9ULL8 1493 aa20.77■□□□□ 0.92
PTPN2-201ENST00000309660 DCAF8L2P0C7V8 631 aa20.52■□□□□ 0.88
PTPN2-201ENST00000309660 CCDC180Q9P1Z9 1646 aa20.33■□□□□ 0.84
PTPN2-201ENST00000309660 SUPT5HO00267 1087 aaKnown RBP20.33■□□□□ 0.84
PTPN2-201ENST00000309660 ZCCHC6Q5VYS8 1495 aaKnown RBP20.25■□□□□ 0.83
PTPN2-201ENST00000309660 DCAF1Q9Y4B6 1507 aa19.54■□□□□ 0.72
PTPN2-201ENST00000309660 CHIC1Q5VXU3 224 aa19.47■□□□□ 0.71
PTPN2-201ENST00000309660 ABCC9O60706 1549 aa19.37■□□□□ 0.69
PTPN2-201ENST00000309660 SCRIBQ14160 1630 aa19.31■□□□□ 0.68
PTPN2-201ENST00000309660 MYO15BQ96JP2 1530 aa19.28■□□□□ 0.68
PTPN2-201ENST00000309660 LOC105371045A0A1W2PR82 267 aa19.03■□□□□ 0.64
PTPN2-201ENST00000309660 RSF1Q96T23 1441 aaPredicted RBP19.02■□□□□ 0.64
PTPN2-201ENST00000309660 NACADO15069 1562 aa18.94■□□□□ 0.62
PTPN2-201ENST00000309660 PCGF6Q9BYE7 350 aa18.88■□□□□ 0.61
PTPN2-201ENST00000309660 CECR2Q9BXF3 1484 aa18.87■□□□□ 0.61
PTPN2-201ENST00000309660 FAM9AQ8IZU1 332 aaPredicted RBP18.86■□□□□ 0.61
PTPN2-201ENST00000309660 TRIM41Q8WV44 630 aa18.86■□□□□ 0.61
PTPN2-201ENST00000309660 EHMT2Q96KQ7 1210 aa18.84■□□□□ 0.61
PTPN2-201ENST00000309660 RB1CC1Q8TDY2 1594 aa18.79■□□□□ 0.6
PTPN2-201ENST00000309660 MROH2BQ7Z745 1585 aa18.73■□□□□ 0.59
PTPN2-201ENST00000309660 PABPN1Q86U42 306 aaKnown RBP eCLIP18.61■□□□□ 0.57
PTPN2-201ENST00000309660 WIZO95785 1651 aa18.61■□□□□ 0.57
PTPN2-201ENST00000309660 HRCP23327 699 aa18.59■□□□□ 0.57
PTPN2-201ENST00000309660 BAZ1AQ9NRL2 1556 aaPredicted RBP18.47■□□□□ 0.55
PTPN2-201ENST00000309660 TRIM26Q12899 539 aaPredicted RBP18.4■□□□□ 0.54
PTPN2-201ENST00000309660 PPARGC1BQ86YN6 1023 aaKnown RBP18.4■□□□□ 0.54
PTPN2-201ENST00000309660 UNC13AQ9UPW8 1703 aa18.32■□□□□ 0.52
PTPN2-201ENST00000309660 SMARCA4P51532 1647 aa18.31■□□□□ 0.52
PTPN2-201ENST00000309660 CCDC88BA6NC98 1476 aa18.26■□□□□ 0.51
PTPN2-201ENST00000309660 TOP2AP11388 1531 aaKnown RBP18.25■□□□□ 0.51
PTPN2-201ENST00000309660 ABCC8Q09428 1581 aa18.23■□□□□ 0.51
PTPN2-201ENST00000309660 TTBK1Q5TCY1 1321 aaPredicted RBP18.16■□□□□ 0.5
PTPN2-201ENST00000309660 BICRAQ9NZM4 1560 aa18.16■□□□□ 0.5
PTPN2-201ENST00000309660 SMARCA2P51531 1590 aa18.15■□□□□ 0.5
PTPN2-201ENST00000309660 EIF4G1Q04637 1599 aaKnown RBP18.09■□□□□ 0.49
PTPN2-201ENST00000309660 UBTFP17480 764 aaKnown RBP18.06■□□□□ 0.48
PTPN2-201ENST00000309660 SOGA1O94964 1423 aa18.05■□□□□ 0.48
PTPN2-201ENST00000309660 CSRNP3Q8WYN3 585 aa17.97■□□□□ 0.47
PTPN2-201ENST00000309660 RUSC2Q8N2Y8 1516 aa17.95■□□□□ 0.46
PTPN2-201ENST00000309660 BAZ1BQ9UIG0 1483 aaKnown RBP17.95■□□□□ 0.46
PTPN2-201ENST00000309660 ATAD2BQ9ULI0 1458 aa17.94■□□□□ 0.46
PTPN2-201ENST00000309660 WRNQ14191 1432 aaPredicted RBP eCLIP17.93■□□□□ 0.46
PTPN2-201ENST00000309660 RANGAP1P46060 587 aaPredicted RBP17.92■□□□□ 0.46
PTPN2-201ENST00000309660 ZEB1P37275 1124 aaPredicted RBP17.88■□□□□ 0.45
PTPN2-201ENST00000309660 CEP162Q5TB80 1403 aa17.87■□□□□ 0.45
PTPN2-201ENST00000309660 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.85■□□□□ 0.45
PTPN2-201ENST00000309660 PEG3Q9GZU2 1588 aa17.83■□□□□ 0.45
PTPN2-201ENST00000309660 CCER1Q8TC90 406 aaPredicted RBP17.8■□□□□ 0.44
PTPN2-201ENST00000309660 TNIKQ9UKE5 1360 aa17.79■□□□□ 0.44
PTPN2-201ENST00000309660 EEA1Q15075 1411 aa17.78■□□□□ 0.44
PTPN2-201ENST00000309660 SYNJ1O43426 1573 aa17.76■□□□□ 0.43
PTPN2-201ENST00000309660 GOLGA3Q08378 1498 aa17.73■□□□□ 0.43
PTPN2-201ENST00000309660 CEP164Q9UPV0 1460 aa17.64■□□□□ 0.41
PTPN2-201ENST00000309660 APLP2Q06481 763 aa17.62■□□□□ 0.41
PTPN2-201ENST00000309660 CLIP1P30622 1438 aa17.6■□□□□ 0.41
PTPN2-201ENST00000309660 RAPGEF2Q9Y4G8 1499 aa17.59■□□□□ 0.41
PTPN2-201ENST00000309660 HNRNPUL2Q1KMD3 747 aaKnown RBP17.58■□□□□ 0.41
PTPN2-201ENST00000309660 NCAPD3P42695 1498 aa17.57■□□□□ 0.4
PTPN2-201ENST00000309660 TOP2BQ02880 1626 aa17.49■□□□□ 0.39
PTPN2-201ENST00000309660 HMGXB3Q12766 1538 aa17.49■□□□□ 0.39
PTPN2-201ENST00000309660 KIF21BO75037 1637 aa17.48■□□□□ 0.39
PTPN2-201ENST00000309660 VPS8Q8N3P4 1428 aa17.43■□□□□ 0.38
PTPN2-201ENST00000309660 CUX1P39880 1505 aa17.42■□□□□ 0.38
PTPN2-201ENST00000309660 CFTRP13569 1480 aa17.4■□□□□ 0.38
PTPN2-201ENST00000309660 KIF27Q86VH2 1401 aa17.39■□□□□ 0.37
PTPN2-201ENST00000309660 BIVM-ERCC5R4GMW8 1640 aa17.36■□□□□ 0.37
PTPN2-201ENST00000309660 CADPSQ9ULU8 1353 aa17.32■□□□□ 0.36
PTPN2-201ENST00000309660 PRXQ9BXM0 1461 aa17.32■□□□□ 0.36
PTPN2-201ENST00000309660 CUX2O14529 1486 aa17.3■□□□□ 0.36
PTPN2-201ENST00000309660 KANK4Q5T7N3 995 aaPredicted RBP17.29■□□□□ 0.36
PTPN2-201ENST00000309660 DIEXFQ68CQ4 756 aaKnown RBP17.28■□□□□ 0.36
PTPN2-201ENST00000309660 ITGAEP38570 1179 aa17.27■□□□□ 0.35
PTPN2-201ENST00000309660 CC2D2AQ9P2K1 1620 aa17.26■□□□□ 0.35
PTPN2-201ENST00000309660 ATP1B4Q9UN42 357 aaPredicted RBP17.26■□□□□ 0.35
PTPN2-201ENST00000309660 P3H3Q8IVL6 736 aa17.24■□□□□ 0.35
PTPN2-201ENST00000309660 ERICH3Q5RHP9 1530 aa17.24■□□□□ 0.35
PTPN2-201ENST00000309660 ARAP1Q96P48 1450 aa17.22■□□□□ 0.35
PTPN2-201ENST00000309660 FGD5Q6ZNL6 1462 aa17.21■□□□□ 0.34
PTPN2-201ENST00000309660 IGF1RP08069 1367 aa17.2■□□□□ 0.34
PTPN2-201ENST00000309660 CARMIL1Q5VZK9 1371 aa17.18■□□□□ 0.34
PTPN2-201ENST00000309660 FANCD2Q9BXW9 1451 aa17.17■□□□□ 0.34
PTPN2-201ENST00000309660 NESP48681 1621 aa17.16■□□□□ 0.34
PTPN2-201ENST00000309660 ZNF316A6NFI3 1004 aaPredicted RBP17.14■□□□□ 0.33
PTPN2-201ENST00000309660 ARHGAP35Q9NRY4 1499 aa17.13■□□□□ 0.33
PTPN2-201ENST00000309660 RAD54L2Q9Y4B4 1467 aa17.11■□□□□ 0.33
PTPN2-201ENST00000309660 DNAJC5BQ9UF47 199 aa17.11■□□□□ 0.33
PTPN2-201ENST00000309660 SCAF1Q9H7N4 1312 aaKnown RBP17.06■□□□□ 0.32
PTPN2-201ENST00000309660 YTHDC1Q96MU7 727 aaKnown RBP17.05■□□□□ 0.32
PTPN2-201ENST00000309660 PRDM2Q13029 1718 aa17.04■□□□□ 0.32
PTPN2-201ENST00000309660 FAM50AQ14320 339 aaKnown RBP17.02■□□□□ 0.32
PTPN2-201ENST00000309660 CCNB3Q8WWL7 1395 aa17.01■□□□□ 0.31
PTPN2-201ENST00000309660 POLA1P09884 1462 aaPredicted RBP17■□□□□ 0.31
PTPN2-201ENST00000309660 NEUROD1Q13562 356 aa17■□□□□ 0.31
PTPN2-201ENST00000309660 TOPBP1Q92547 1522 aa16.99■□□□□ 0.31
PTPN2-201ENST00000309660 TDRD9Q8NDG6 1382 aaKnown RBP16.99■□□□□ 0.31
PTPN2-201ENST00000309660 DHX57Q6P158 1386 aaKnown RBP16.96■□□□□ 0.31
PTPN2-201ENST00000309660 FHOD3Q2V2M9 1422 aa16.96■□□□□ 0.31
PTPN2-201ENST00000309660 CENPBP07199 599 aaPredicted RBP16.95■□□□□ 0.3
PTPN2-201ENST00000309660 ACIN1Q9UKV3 1341 aaKnown RBP16.95■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms