RNA–Protein interactions for RNA: ENST00000309052.8

LCLAT1-201, Transcript of lysocardiolipin acyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene LCLAT1, Length 5,060 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LCLAT1-201ENST00000309052 NISCHQ9Y2I1 1504 aa17.93■□□□□ 0.46
LCLAT1-201ENST00000309052 DCAF8L2P0C7V8 631 aa16.35■□□□□ 0.21
LCLAT1-201ENST00000309052 SHROOM4Q9ULL8 1493 aa15.91■□□□□ 0.14
LCLAT1-201ENST00000309052 SUPT5HO00267 1087 aaKnown RBP15.5■□□□□ 0.07
LCLAT1-201ENST00000309052 ABCC9O60706 1549 aa15.28■□□□□ 0.04
LCLAT1-201ENST00000309052 CCDC180Q9P1Z9 1646 aa15.04■□□□□ -0
LCLAT1-201ENST00000309052 ZCCHC6Q5VYS8 1495 aaKnown RBP14.95□□□□□ -0.02
LCLAT1-201ENST00000309052 PABPN1Q86U42 306 aaKnown RBP eCLIP14.81□□□□□ -0.04
LCLAT1-201ENST00000309052 EHMT2Q96KQ7 1210 aa14.71□□□□□ -0.06
LCLAT1-201ENST00000309052 SCRIBQ14160 1630 aa14.67□□□□□ -0.06
LCLAT1-201ENST00000309052 FAM9AQ8IZU1 332 aaPredicted RBP14.5□□□□□ -0.09
LCLAT1-201ENST00000309052 CHIC1Q5VXU3 224 aa14.34□□□□□ -0.11
LCLAT1-201ENST00000309052 DCAF1Q9Y4B6 1507 aa14.3□□□□□ -0.12
LCLAT1-201ENST00000309052 CECR2Q9BXF3 1484 aa14.28□□□□□ -0.12
LCLAT1-201ENST00000309052 NACADO15069 1562 aa14.27□□□□□ -0.13
LCLAT1-201ENST00000309052 RB1CC1Q8TDY2 1594 aa14.27□□□□□ -0.13
LCLAT1-201ENST00000309052 TRIM41Q8WV44 630 aa14.25□□□□□ -0.13
LCLAT1-201ENST00000309052 LOC105371045A0A1W2PR82 267 aa14.22□□□□□ -0.13
LCLAT1-201ENST00000309052 RSF1Q96T23 1441 aaPredicted RBP14.17□□□□□ -0.14
LCLAT1-201ENST00000309052 RANGAP1P46060 587 aaPredicted RBP14.08□□□□□ -0.16
LCLAT1-201ENST00000309052 MROH2BQ7Z745 1585 aa14.05□□□□□ -0.16
LCLAT1-201ENST00000309052 TTBK1Q5TCY1 1321 aaPredicted RBP14.03□□□□□ -0.16
LCLAT1-201ENST00000309052 MYO15BQ96JP2 1530 aa13.99□□□□□ -0.17
LCLAT1-201ENST00000309052 PPARGC1BQ86YN6 1023 aaKnown RBP13.97□□□□□ -0.17
LCLAT1-201ENST00000309052 WIZO95785 1651 aa13.91□□□□□ -0.18
LCLAT1-201ENST00000309052 PCGF6Q9BYE7 350 aa13.84□□□□□ -0.19
LCLAT1-201ENST00000309052 UBTFP17480 764 aaKnown RBP13.82□□□□□ -0.2
LCLAT1-201ENST00000309052 BAZ1AQ9NRL2 1556 aaPredicted RBP13.81□□□□□ -0.2
LCLAT1-201ENST00000309052 UNC13AQ9UPW8 1703 aa13.75□□□□□ -0.21
LCLAT1-201ENST00000309052 BICRAQ9NZM4 1560 aa13.74□□□□□ -0.21
LCLAT1-201ENST00000309052 CCDC88BA6NC98 1476 aa13.69□□□□□ -0.22
LCLAT1-201ENST00000309052 BAZ1BQ9UIG0 1483 aaKnown RBP13.69□□□□□ -0.22
LCLAT1-201ENST00000309052 DNAJC5BQ9UF47 199 aa13.69□□□□□ -0.22
LCLAT1-201ENST00000309052 SMARCA4P51532 1647 aa13.68□□□□□ -0.22
LCLAT1-201ENST00000309052 ABCC8Q09428 1581 aa13.64□□□□□ -0.23
LCLAT1-201ENST00000309052 ATAD2BQ9ULI0 1458 aa13.61□□□□□ -0.23
LCLAT1-201ENST00000309052 ATP1B4Q9UN42 357 aaPredicted RBP13.57□□□□□ -0.24
LCLAT1-201ENST00000309052 CSRNP3Q8WYN3 585 aa13.53□□□□□ -0.24
LCLAT1-201ENST00000309052 TOP2AP11388 1531 aaKnown RBP13.52□□□□□ -0.24
LCLAT1-201ENST00000309052 EIF4G1Q04637 1599 aaKnown RBP13.5□□□□□ -0.25
LCLAT1-201ENST00000309052 SOGA1O94964 1423 aa13.5□□□□□ -0.25
LCLAT1-201ENST00000309052 SMARCA2P51531 1590 aa13.46□□□□□ -0.25
LCLAT1-201ENST00000309052 WRNQ14191 1432 aaPredicted RBP eCLIP13.46□□□□□ -0.25
LCLAT1-201ENST00000309052 APLP2Q06481 763 aa13.43□□□□□ -0.26
LCLAT1-201ENST00000309052 P3H3Q8IVL6 736 aa13.43□□□□□ -0.26
LCLAT1-201ENST00000309052 RUSC2Q8N2Y8 1516 aa13.43□□□□□ -0.26
LCLAT1-201ENST00000309052 FBLN2P98095 1184 aa13.35□□□□□ -0.27
LCLAT1-201ENST00000309052 CC2D2AQ9P2K1 1620 aa13.34□□□□□ -0.27
LCLAT1-201ENST00000309052 NESP48681 1621 aa13.32□□□□□ -0.28
LCLAT1-201ENST00000309052 ARID3CA6NKF2 412 aa13.32□□□□□ -0.28
LCLAT1-201ENST00000309052 TRIM26Q12899 539 aaPredicted RBP13.32□□□□□ -0.28
LCLAT1-201ENST00000309052 NCAPD3P42695 1498 aa13.31□□□□□ -0.28
LCLAT1-201ENST00000309052 ITGAEP38570 1179 aa13.31□□□□□ -0.28
LCLAT1-201ENST00000309052 HNRNPUL2Q1KMD3 747 aaKnown RBP13.29□□□□□ -0.28
LCLAT1-201ENST00000309052 CADPSQ9ULU8 1353 aa13.27□□□□□ -0.28
LCLAT1-201ENST00000309052 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.22□□□□□ -0.29
LCLAT1-201ENST00000309052 TDRD9Q8NDG6 1382 aaKnown RBP13.2□□□□□ -0.3
LCLAT1-201ENST00000309052 CCER1Q8TC90 406 aaPredicted RBP13.18□□□□□ -0.3
LCLAT1-201ENST00000309052 SYNJ1O43426 1573 aa13.18□□□□□ -0.3
LCLAT1-201ENST00000309052 CUX2O14529 1486 aa13.17□□□□□ -0.3
LCLAT1-201ENST00000309052 CEP162Q5TB80 1403 aa13.17□□□□□ -0.3
LCLAT1-201ENST00000309052 FANCD2Q9BXW9 1451 aa13.14□□□□□ -0.31
LCLAT1-201ENST00000309052 PEG3Q9GZU2 1588 aa13.13□□□□□ -0.31
LCLAT1-201ENST00000309052 RAD54L2Q9Y4B4 1467 aa13.12□□□□□ -0.31
LCLAT1-201ENST00000309052 CFTRP13569 1480 aa13.11□□□□□ -0.31
LCLAT1-201ENST00000309052 RAPGEF2Q9Y4G8 1499 aa13.11□□□□□ -0.31
LCLAT1-201ENST00000309052 KIF27Q86VH2 1401 aa13.11□□□□□ -0.31
LCLAT1-201ENST00000309052 ERCC6Q03468 1493 aa13.1□□□□□ -0.31
LCLAT1-201ENST00000309052 HMGXB3Q12766 1538 aa13.1□□□□□ -0.31
LCLAT1-201ENST00000309052 CLIP1P30622 1438 aa13.1□□□□□ -0.31
LCLAT1-201ENST00000309052 HRCP23327 699 aa13.08□□□□□ -0.31
LCLAT1-201ENST00000309052 GOLGA3Q08378 1498 aa13.08□□□□□ -0.32
LCLAT1-201ENST00000309052 CUX1P39880 1505 aa13.05□□□□□ -0.32
LCLAT1-201ENST00000309052 TNIKQ9UKE5 1360 aa13.05□□□□□ -0.32
LCLAT1-201ENST00000309052 FGD5Q6ZNL6 1462 aa13.04□□□□□ -0.32
LCLAT1-201ENST00000309052 CARMIL1Q5VZK9 1371 aa13.04□□□□□ -0.32
LCLAT1-201ENST00000309052 PDS5BQ9NTI5 1447 aa13.03□□□□□ -0.32
LCLAT1-201ENST00000309052 CEP164Q9UPV0 1460 aa13.03□□□□□ -0.32
LCLAT1-201ENST00000309052 EEA1Q15075 1411 aa13.02□□□□□ -0.32
LCLAT1-201ENST00000309052 FAM50AQ14320 339 aaKnown RBP13.02□□□□□ -0.33
LCLAT1-201ENST00000309052 CHMP7Q8WUX9 453 aaPredicted RBP12.99□□□□□ -0.33
LCLAT1-201ENST00000309052 KANK4Q5T7N3 995 aaPredicted RBP12.97□□□□□ -0.33
LCLAT1-201ENST00000309052 IGF1RP08069 1367 aa12.97□□□□□ -0.33
LCLAT1-201ENST00000309052 AQRO60306 1485 aaKnown RBP eCLIP12.95□□□□□ -0.34
LCLAT1-201ENST00000309052 TOP2BQ02880 1626 aa12.91□□□□□ -0.34
LCLAT1-201ENST00000309052 POLA1P09884 1462 aaPredicted RBP12.9□□□□□ -0.34
LCLAT1-201ENST00000309052 TOPBP1Q92547 1522 aa12.9□□□□□ -0.34
LCLAT1-201ENST00000309052 URB2Q14146 1524 aaKnown RBP12.85□□□□□ -0.35
LCLAT1-201ENST00000309052 FHOD3Q2V2M9 1422 aa12.84□□□□□ -0.35
LCLAT1-201ENST00000309052 ZNF777Q9ULD5 760 aaPredicted RBP12.83□□□□□ -0.36
LCLAT1-201ENST00000309052 CHIC2Q9UKJ5 165 aa12.82□□□□□ -0.36
LCLAT1-201ENST00000309052 GAPVD1Q14C86 1478 aa12.81□□□□□ -0.36
LCLAT1-201ENST00000309052 VPS8Q8N3P4 1428 aa12.8□□□□□ -0.36
LCLAT1-201ENST00000309052 ZNF608Q9ULD9 1512 aaPredicted RBP12.78□□□□□ -0.36
LCLAT1-201ENST00000309052 PRXQ9BXM0 1461 aa12.78□□□□□ -0.36
LCLAT1-201ENST00000309052 NEUROD1Q13562 356 aa12.77□□□□□ -0.37
LCLAT1-201ENST00000309052 ARAP1Q96P48 1450 aa12.76□□□□□ -0.37
LCLAT1-201ENST00000309052 LAMC3Q9Y6N6 1575 aa12.75□□□□□ -0.37
LCLAT1-201ENST00000309052 DNMBPQ6XZF7 1577 aa12.74□□□□□ -0.37
LCLAT1-201ENST00000309052 MTUS2Q5JR59 1369 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms