RNA–Protein interactions for RNA: ENST00000298274.12

PCDH11X-201, Transcript of protocadherin 11 X-linked, humanhuman

TSL 1 (best)

Gene PCDH11X, Length 4,767 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH11X-201ENST00000298274 NISCHQ9Y2I1 1504 aa24.53■■□□□ 1.52
PCDH11X-201ENST00000298274 DCAF8L2P0C7V8 631 aa21.93■■□□□ 1.1
PCDH11X-201ENST00000298274 CCDC180Q9P1Z9 1646 aa21.37■■□□□ 1.01
PCDH11X-201ENST00000298274 ABCC9O60706 1549 aa20.78■□□□□ 0.92
PCDH11X-201ENST00000298274 SHROOM4Q9ULL8 1493 aa20.57■□□□□ 0.88
PCDH11X-201ENST00000298274 ZCCHC6Q5VYS8 1495 aaKnown RBP20.43■□□□□ 0.86
PCDH11X-201ENST00000298274 RB1CC1Q8TDY2 1594 aa20.34■□□□□ 0.85
PCDH11X-201ENST00000298274 NACADO15069 1562 aa20.33■□□□□ 0.85
PCDH11X-201ENST00000298274 DCAF1Q9Y4B6 1507 aa20.25■□□□□ 0.83
PCDH11X-201ENST00000298274 SUPT5HO00267 1087 aaKnown RBP20.25■□□□□ 0.83
PCDH11X-201ENST00000298274 MYO15BQ96JP2 1530 aa20.1■□□□□ 0.81
PCDH11X-201ENST00000298274 SCRIBQ14160 1630 aa19.79■□□□□ 0.76
PCDH11X-201ENST00000298274 PABPN1Q86U42 306 aaKnown RBP eCLIP19.77■□□□□ 0.75
PCDH11X-201ENST00000298274 FAM9AQ8IZU1 332 aaPredicted RBP19.52■□□□□ 0.72
PCDH11X-201ENST00000298274 BAZ1AQ9NRL2 1556 aaPredicted RBP19.3■□□□□ 0.68
PCDH11X-201ENST00000298274 TRIM41Q8WV44 630 aa19.27■□□□□ 0.68
PCDH11X-201ENST00000298274 SMARCA2P51531 1590 aa19.1■□□□□ 0.65
PCDH11X-201ENST00000298274 BAZ1BQ9UIG0 1483 aaKnown RBP19.07■□□□□ 0.64
PCDH11X-201ENST00000298274 APLP2Q06481 763 aa19.01■□□□□ 0.63
PCDH11X-201ENST00000298274 RSF1Q96T23 1441 aaPredicted RBP18.99■□□□□ 0.63
PCDH11X-201ENST00000298274 CECR2Q9BXF3 1484 aa18.79■□□□□ 0.6
PCDH11X-201ENST00000298274 SMARCA4P51532 1647 aa18.78■□□□□ 0.6
PCDH11X-201ENST00000298274 UBTFP17480 764 aaKnown RBP18.75■□□□□ 0.59
PCDH11X-201ENST00000298274 TOP2AP11388 1531 aaKnown RBP18.71■□□□□ 0.59
PCDH11X-201ENST00000298274 MROH2BQ7Z745 1585 aa18.7■□□□□ 0.58
PCDH11X-201ENST00000298274 ATAD2BQ9ULI0 1458 aa18.69■□□□□ 0.58
PCDH11X-201ENST00000298274 CHIC1Q5VXU3 224 aa18.68■□□□□ 0.58
PCDH11X-201ENST00000298274 EIF4G1Q04637 1599 aaKnown RBP18.65■□□□□ 0.58
PCDH11X-201ENST00000298274 PDS5BQ9NTI5 1447 aa18.63■□□□□ 0.57
PCDH11X-201ENST00000298274 NCAPD3P42695 1498 aa18.62■□□□□ 0.57
PCDH11X-201ENST00000298274 ERCC6Q03468 1493 aa18.58■□□□□ 0.56
PCDH11X-201ENST00000298274 BICRAQ9NZM4 1560 aa18.55■□□□□ 0.56
PCDH11X-201ENST00000298274 EHMT2Q96KQ7 1210 aa18.53■□□□□ 0.56
PCDH11X-201ENST00000298274 HMGXB3Q12766 1538 aa18.52■□□□□ 0.56
PCDH11X-201ENST00000298274 EEA1Q15075 1411 aa18.51■□□□□ 0.55
PCDH11X-201ENST00000298274 CADPSQ9ULU8 1353 aa18.46■□□□□ 0.55
PCDH11X-201ENST00000298274 WRNQ14191 1432 aaPredicted RBP eCLIP18.44■□□□□ 0.54
PCDH11X-201ENST00000298274 ABCC8Q09428 1581 aa18.43■□□□□ 0.54
PCDH11X-201ENST00000298274 CCDC88BA6NC98 1476 aa18.43■□□□□ 0.54
PCDH11X-201ENST00000298274 WIZO95785 1651 aa18.43■□□□□ 0.54
PCDH11X-201ENST00000298274 UNC13AQ9UPW8 1703 aa18.39■□□□□ 0.54
PCDH11X-201ENST00000298274 CSRNP3Q8WYN3 585 aa18.38■□□□□ 0.53
PCDH11X-201ENST00000298274 CC2D2AQ9P2K1 1620 aa18.37■□□□□ 0.53
PCDH11X-201ENST00000298274 ATP1B4Q9UN42 357 aaPredicted RBP18.35■□□□□ 0.53
PCDH11X-201ENST00000298274 RANGAP1P46060 587 aaPredicted RBP18.3■□□□□ 0.52
PCDH11X-201ENST00000298274 CEP164Q9UPV0 1460 aa18.3■□□□□ 0.52
PCDH11X-201ENST00000298274 KIF27Q86VH2 1401 aa18.3■□□□□ 0.52
PCDH11X-201ENST00000298274 PEG3Q9GZU2 1588 aa18.28■□□□□ 0.52
PCDH11X-201ENST00000298274 FBLN2P98095 1184 aa18.25■□□□□ 0.51
PCDH11X-201ENST00000298274 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.18■□□□□ 0.5
PCDH11X-201ENST00000298274 HNRNPUL2Q1KMD3 747 aaKnown RBP18.18■□□□□ 0.5
PCDH11X-201ENST00000298274 FANCD2Q9BXW9 1451 aa18.17■□□□□ 0.5
PCDH11X-201ENST00000298274 CHMP7Q8WUX9 453 aaPredicted RBP18.17■□□□□ 0.5
PCDH11X-201ENST00000298274 CDK11AQ9UQ88 783 aaPredicted RBP18.11■□□□□ 0.49
PCDH11X-201ENST00000298274 CFTRP13569 1480 aa18.1■□□□□ 0.49
PCDH11X-201ENST00000298274 LAMC3Q9Y6N6 1575 aa18.1■□□□□ 0.49
PCDH11X-201ENST00000298274 SOGA1O94964 1423 aa18.06■□□□□ 0.48
PCDH11X-201ENST00000298274 GOLGA3Q08378 1498 aa18.06■□□□□ 0.48
PCDH11X-201ENST00000298274 NPM1P06748 294 aaKnown RBP eCLIP18.02■□□□□ 0.47
PCDH11X-201ENST00000298274 CUX2O14529 1486 aa18.01■□□□□ 0.47
PCDH11X-201ENST00000298274 MRC2Q9UBG0 1479 aa17.99■□□□□ 0.47
PCDH11X-201ENST00000298274 TTBK1Q5TCY1 1321 aaPredicted RBP17.96■□□□□ 0.47
PCDH11X-201ENST00000298274 CARMIL1Q5VZK9 1371 aa17.91■□□□□ 0.46
PCDH11X-201ENST00000298274 LOC105371045A0A1W2PR82 267 aa17.9■□□□□ 0.46
PCDH11X-201ENST00000298274 ZEB1P37275 1124 aaPredicted RBP17.87■□□□□ 0.45
PCDH11X-201ENST00000298274 IFT140Q96RY7 1462 aa17.86■□□□□ 0.45
PCDH11X-201ENST00000298274 TNIKQ9UKE5 1360 aa17.84■□□□□ 0.45
PCDH11X-201ENST00000298274 MYT1LQ9UL68 1186 aa17.84■□□□□ 0.45
PCDH11X-201ENST00000298274 CARMIL2Q6F5E8 1435 aa17.83■□□□□ 0.44
PCDH11X-201ENST00000298274 TRIM26Q12899 539 aaPredicted RBP17.82■□□□□ 0.44
PCDH11X-201ENST00000298274 DNMBPQ6XZF7 1577 aa17.82■□□□□ 0.44
PCDH11X-201ENST00000298274 CLIP1P30622 1438 aa17.8■□□□□ 0.44
PCDH11X-201ENST00000298274 FGD5Q6ZNL6 1462 aa17.79■□□□□ 0.44
PCDH11X-201ENST00000298274 FHAD1B1AJZ9 1412 aa17.76■□□□□ 0.43
PCDH11X-201ENST00000298274 ACIN1Q9UKV3 1341 aaKnown RBP17.76■□□□□ 0.43
PCDH11X-201ENST00000298274 RAPGEF2Q9Y4G8 1499 aa17.76■□□□□ 0.43
PCDH11X-201ENST00000298274 TDRD9Q8NDG6 1382 aaKnown RBP17.73■□□□□ 0.43
PCDH11X-201ENST00000298274 GAPVD1Q14C86 1478 aa17.73■□□□□ 0.43
PCDH11X-201ENST00000298274 TOPBP1Q92547 1522 aa17.72■□□□□ 0.43
PCDH11X-201ENST00000298274 GRIN2BQ13224 1484 aa17.71■□□□□ 0.42
PCDH11X-201ENST00000298274 TOP2BQ02880 1626 aa17.7■□□□□ 0.42
PCDH11X-201ENST00000298274 NESP48681 1621 aa17.69■□□□□ 0.42
PCDH11X-201ENST00000298274 P3H3Q8IVL6 736 aa17.68■□□□□ 0.42
PCDH11X-201ENST00000298274 DNAJC5BQ9UF47 199 aa17.67■□□□□ 0.42
PCDH11X-201ENST00000298274 PCGF6Q9BYE7 350 aa17.64■□□□□ 0.41
PCDH11X-201ENST00000298274 CEP162Q5TB80 1403 aa17.63■□□□□ 0.41
PCDH11X-201ENST00000298274 PLEKHD1A6NEE1 506 aa17.62■□□□□ 0.41
PCDH11X-201ENST00000298274 MTUS2Q5JR59 1369 aa17.61■□□□□ 0.41
PCDH11X-201ENST00000298274 FMN1Q68DA7 1419 aa17.61■□□□□ 0.41
PCDH11X-201ENST00000298274 CCER1Q8TC90 406 aaPredicted RBP17.6■□□□□ 0.41
PCDH11X-201ENST00000298274 FAM50AQ14320 339 aaKnown RBP17.6■□□□□ 0.41
PCDH11X-201ENST00000298274 OSCARQ8IYS5 282 aa17.57■□□□□ 0.4
PCDH11X-201ENST00000298274 POLA1P09884 1462 aaPredicted RBP17.57■□□□□ 0.4
PCDH11X-201ENST00000298274 ABCA10Q8WWZ4 1543 aa17.56■□□□□ 0.4
PCDH11X-201ENST00000298274 CUX1P39880 1505 aa17.56■□□□□ 0.4
PCDH11X-201ENST00000298274 ERICH3Q5RHP9 1530 aa17.53■□□□□ 0.4
PCDH11X-201ENST00000298274 RAD54L2Q9Y4B4 1467 aa17.52■□□□□ 0.4
PCDH11X-201ENST00000298274 PRDM2Q13029 1718 aa17.51■□□□□ 0.39
PCDH11X-201ENST00000298274 IGF1RP08069 1367 aa17.5■□□□□ 0.39
PCDH11X-201ENST00000298274 SYNJ1O43426 1573 aa17.5■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 125.2 ms