RNA–Protein interactions for RNA: ENST00000296271.3

RHO-201, Transcript of rhodopsin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RHO, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RHO-201ENST00000296271 NISCHQ9Y2I1 1504 aa25.09■■□□□ 1.61
RHO-201ENST00000296271 SHROOM4Q9ULL8 1493 aa21.47■■□□□ 1.03
RHO-201ENST00000296271 CCDC180Q9P1Z9 1646 aa21.32■■□□□ 1
RHO-201ENST00000296271 ZCCHC6Q5VYS8 1495 aaKnown RBP21.16■□□□□ 0.98
RHO-201ENST00000296271 DCAF8L2P0C7V8 631 aa21.11■□□□□ 0.97
RHO-201ENST00000296271 SUPT5HO00267 1087 aaKnown RBP20.9■□□□□ 0.94
RHO-201ENST00000296271 DCAF1Q9Y4B6 1507 aa20.45■□□□□ 0.86
RHO-201ENST00000296271 ABCC9O60706 1549 aa20.21■□□□□ 0.83
RHO-201ENST00000296271 SCRIBQ14160 1630 aa20.15■□□□□ 0.82
RHO-201ENST00000296271 CHIC1Q5VXU3 224 aa20.12■□□□□ 0.81
RHO-201ENST00000296271 MYO15BQ96JP2 1530 aa20.05■□□□□ 0.8
RHO-201ENST00000296271 RSF1Q96T23 1441 aaPredicted RBP19.82■□□□□ 0.76
RHO-201ENST00000296271 NACADO15069 1562 aa19.79■□□□□ 0.76
RHO-201ENST00000296271 CECR2Q9BXF3 1484 aa19.72■□□□□ 0.75
RHO-201ENST00000296271 LOC105371045A0A1W2PR82 267 aa19.64■□□□□ 0.73
RHO-201ENST00000296271 RB1CC1Q8TDY2 1594 aa19.61■□□□□ 0.73
RHO-201ENST00000296271 MROH2BQ7Z745 1585 aa19.58■□□□□ 0.73
RHO-201ENST00000296271 WIZO95785 1651 aa19.47■□□□□ 0.71
RHO-201ENST00000296271 TRIM41Q8WV44 630 aa19.38■□□□□ 0.69
RHO-201ENST00000296271 FAM9AQ8IZU1 332 aaPredicted RBP19.37■□□□□ 0.69
RHO-201ENST00000296271 UNC13AQ9UPW8 1703 aa19.37■□□□□ 0.69
RHO-201ENST00000296271 PABPN1Q86U42 306 aaKnown RBP eCLIP19.37■□□□□ 0.69
RHO-201ENST00000296271 EHMT2Q96KQ7 1210 aa19.33■□□□□ 0.68
RHO-201ENST00000296271 PCGF6Q9BYE7 350 aa19.3■□□□□ 0.68
RHO-201ENST00000296271 BAZ1AQ9NRL2 1556 aaPredicted RBP19.24■□□□□ 0.67
RHO-201ENST00000296271 SMARCA4P51532 1647 aa19.16■□□□□ 0.66
RHO-201ENST00000296271 BICRAQ9NZM4 1560 aa19.14■□□□□ 0.65
RHO-201ENST00000296271 CCDC88BA6NC98 1476 aa19.05■□□□□ 0.64
RHO-201ENST00000296271 TOP2AP11388 1531 aaKnown RBP19.04■□□□□ 0.64
RHO-201ENST00000296271 EIF4G1Q04637 1599 aaKnown RBP19.02■□□□□ 0.63
RHO-201ENST00000296271 HRCP23327 699 aa19.01■□□□□ 0.63
RHO-201ENST00000296271 ABCC8Q09428 1581 aa18.99■□□□□ 0.63
RHO-201ENST00000296271 SMARCA2P51531 1590 aa18.99■□□□□ 0.63
RHO-201ENST00000296271 PPARGC1BQ86YN6 1023 aaKnown RBP18.88■□□□□ 0.61
RHO-201ENST00000296271 TRIM26Q12899 539 aaPredicted RBP18.85■□□□□ 0.61
RHO-201ENST00000296271 SOGA1O94964 1423 aa18.76■□□□□ 0.59
RHO-201ENST00000296271 ATAD2BQ9ULI0 1458 aa18.75■□□□□ 0.59
RHO-201ENST00000296271 RUSC2Q8N2Y8 1516 aa18.73■□□□□ 0.59
RHO-201ENST00000296271 PEG3Q9GZU2 1588 aa18.72■□□□□ 0.59
RHO-201ENST00000296271 BAZ1BQ9UIG0 1483 aaKnown RBP18.67■□□□□ 0.58
RHO-201ENST00000296271 TTBK1Q5TCY1 1321 aaPredicted RBP18.6■□□□□ 0.57
RHO-201ENST00000296271 WRNQ14191 1432 aaPredicted RBP eCLIP18.59■□□□□ 0.57
RHO-201ENST00000296271 SYNJ1O43426 1573 aa18.56■□□□□ 0.56
RHO-201ENST00000296271 CSRNP3Q8WYN3 585 aa18.56■□□□□ 0.56
RHO-201ENST00000296271 UBTFP17480 764 aaKnown RBP18.52■□□□□ 0.56
RHO-201ENST00000296271 CEP162Q5TB80 1403 aa18.48■□□□□ 0.55
RHO-201ENST00000296271 TNIKQ9UKE5 1360 aa18.4■□□□□ 0.54
RHO-201ENST00000296271 RANGAP1P46060 587 aaPredicted RBP18.39■□□□□ 0.53
RHO-201ENST00000296271 NCAPD3P42695 1498 aa18.37■□□□□ 0.53
RHO-201ENST00000296271 EEA1Q15075 1411 aa18.37■□□□□ 0.53
RHO-201ENST00000296271 GOLGA3Q08378 1498 aa18.34■□□□□ 0.53
RHO-201ENST00000296271 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.32■□□□□ 0.52
RHO-201ENST00000296271 HMGXB3Q12766 1538 aa18.3■□□□□ 0.52
RHO-201ENST00000296271 RAPGEF2Q9Y4G8 1499 aa18.28■□□□□ 0.52
RHO-201ENST00000296271 TOP2BQ02880 1626 aa18.26■□□□□ 0.51
RHO-201ENST00000296271 CEP164Q9UPV0 1460 aa18.25■□□□□ 0.51
RHO-201ENST00000296271 CUX1P39880 1505 aa18.22■□□□□ 0.51
RHO-201ENST00000296271 KIF21BO75037 1637 aa18.2■□□□□ 0.5
RHO-201ENST00000296271 CFTRP13569 1480 aa18.18■□□□□ 0.5
RHO-201ENST00000296271 CLIP1P30622 1438 aa18.18■□□□□ 0.5
RHO-201ENST00000296271 ZEB1P37275 1124 aaPredicted RBP18.18■□□□□ 0.5
RHO-201ENST00000296271 BIVM-ERCC5R4GMW8 1640 aa18.17■□□□□ 0.5
RHO-201ENST00000296271 CCER1Q8TC90 406 aaPredicted RBP18.14■□□□□ 0.49
RHO-201ENST00000296271 CC2D2AQ9P2K1 1620 aa18.12■□□□□ 0.49
RHO-201ENST00000296271 CADPSQ9ULU8 1353 aa18.04■□□□□ 0.48
RHO-201ENST00000296271 PRXQ9BXM0 1461 aa18.04■□□□□ 0.48
RHO-201ENST00000296271 HNRNPUL2Q1KMD3 747 aaKnown RBP18.03■□□□□ 0.48
RHO-201ENST00000296271 VPS8Q8N3P4 1428 aa18.03■□□□□ 0.48
RHO-201ENST00000296271 DNAJC5BQ9UF47 199 aa18.01■□□□□ 0.47
RHO-201ENST00000296271 KIF27Q86VH2 1401 aa18■□□□□ 0.47
RHO-201ENST00000296271 NESP48681 1621 aa17.97■□□□□ 0.47
RHO-201ENST00000296271 CUX2O14529 1486 aa17.95■□□□□ 0.46
RHO-201ENST00000296271 APLP2Q06481 763 aa17.94■□□□□ 0.46
RHO-201ENST00000296271 ARAP1Q96P48 1450 aa17.94■□□□□ 0.46
RHO-201ENST00000296271 ERICH3Q5RHP9 1530 aa17.93■□□□□ 0.46
RHO-201ENST00000296271 PRDM2Q13029 1718 aa17.93■□□□□ 0.46
RHO-201ENST00000296271 FGD5Q6ZNL6 1462 aa17.93■□□□□ 0.46
RHO-201ENST00000296271 KANK4Q5T7N3 995 aaPredicted RBP17.91■□□□□ 0.46
RHO-201ENST00000296271 IGF1RP08069 1367 aa17.9■□□□□ 0.46
RHO-201ENST00000296271 FANCD2Q9BXW9 1451 aa17.9■□□□□ 0.46
RHO-201ENST00000296271 RAD54L2Q9Y4B4 1467 aa17.85■□□□□ 0.45
RHO-201ENST00000296271 ARHGAP35Q9NRY4 1499 aa17.82■□□□□ 0.44
RHO-201ENST00000296271 CARMIL1Q5VZK9 1371 aa17.81■□□□□ 0.44
RHO-201ENST00000296271 P3H3Q8IVL6 736 aa17.79■□□□□ 0.44
RHO-201ENST00000296271 TOPBP1Q92547 1522 aa17.75■□□□□ 0.43
RHO-201ENST00000296271 POLA1P09884 1462 aaPredicted RBP17.74■□□□□ 0.43
RHO-201ENST00000296271 DNMBPQ6XZF7 1577 aa17.7■□□□□ 0.42
RHO-201ENST00000296271 ITGAEP38570 1179 aa17.69■□□□□ 0.42
RHO-201ENST00000296271 URB2Q14146 1524 aaKnown RBP17.69■□□□□ 0.42
RHO-201ENST00000296271 ATP1B4Q9UN42 357 aaPredicted RBP17.66■□□□□ 0.42
RHO-201ENST00000296271 TDRD9Q8NDG6 1382 aaKnown RBP17.66■□□□□ 0.42
RHO-201ENST00000296271 ABCA10Q8WWZ4 1543 aa17.64■□□□□ 0.41
RHO-201ENST00000296271 DIEXFQ68CQ4 756 aaKnown RBP17.63■□□□□ 0.41
RHO-201ENST00000296271 FHOD3Q2V2M9 1422 aa17.59■□□□□ 0.41
RHO-201ENST00000296271 LAMC3Q9Y6N6 1575 aa17.59■□□□□ 0.41
RHO-201ENST00000296271 KIF21AQ7Z4S6 1674 aa17.56■□□□□ 0.4
RHO-201ENST00000296271 RRBP1Q9P2E9 1410 aaKnown RBP17.55■□□□□ 0.4
RHO-201ENST00000296271 CCNB3Q8WWL7 1395 aa17.54■□□□□ 0.4
RHO-201ENST00000296271 ZNF316A6NFI3 1004 aaPredicted RBP17.53■□□□□ 0.4
RHO-201ENST00000296271 DHX57Q6P158 1386 aaKnown RBP17.53■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms