RNA–Protein interactions for RNA: ENST00000266661.8

BEST3-201, Transcript of bestrophin 3, humanhuman

TSL 1 (best) BASIC

Gene BEST3, Length 1,876 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3-201ENST00000266661 NISCHQ9Y2I1 1504 aa26.28■■□□□ 1.8
BEST3-201ENST00000266661 CCDC180Q9P1Z9 1646 aa23.19■■□□□ 1.3
BEST3-201ENST00000266661 ABCC9O60706 1549 aa22.64■■□□□ 1.21
BEST3-201ENST00000266661 DCAF8L2P0C7V8 631 aa22.07■■□□□ 1.12
BEST3-201ENST00000266661 ZCCHC6Q5VYS8 1495 aaKnown RBP22.07■■□□□ 1.12
BEST3-201ENST00000266661 SHROOM4Q9ULL8 1493 aa21.93■■□□□ 1.1
BEST3-201ENST00000266661 NACADO15069 1562 aa21.73■■□□□ 1.07
BEST3-201ENST00000266661 RB1CC1Q8TDY2 1594 aa21.72■■□□□ 1.07
BEST3-201ENST00000266661 DCAF1Q9Y4B6 1507 aa21.62■■□□□ 1.05
BEST3-201ENST00000266661 MYO15BQ96JP2 1530 aa21.58■■□□□ 1.05
BEST3-201ENST00000266661 SUPT5HO00267 1087 aaKnown RBP21.52■■□□□ 1.03
BEST3-201ENST00000266661 UNC13AQ9UPW8 1703 aa21.45■■□□□ 1.02
BEST3-201ENST00000266661 SCRIBQ14160 1630 aa21.35■■□□□ 1.01
BEST3-201ENST00000266661 PABPN1Q86U42 306 aaKnown RBP eCLIP21.26■□□□□ 0.99
BEST3-201ENST00000266661 BICRAQ9NZM4 1560 aa21.17■□□□□ 0.98
BEST3-201ENST00000266661 CHIC1Q5VXU3 224 aa21.12■□□□□ 0.97
BEST3-201ENST00000266661 DNAJC5BQ9UF47 199 aa20.64■□□□□ 0.9
BEST3-201ENST00000266661 RSF1Q96T23 1441 aaPredicted RBP20.6■□□□□ 0.89
BEST3-201ENST00000266661 CECR2Q9BXF3 1484 aa20.56■□□□□ 0.88
BEST3-201ENST00000266661 EIF4G1Q04637 1599 aaKnown RBP20.55■□□□□ 0.88
BEST3-201ENST00000266661 HRCP23327 699 aa20.5■□□□□ 0.87
BEST3-201ENST00000266661 CC2D2AQ9P2K1 1620 aa20.46■□□□□ 0.87
BEST3-201ENST00000266661 LOC105371045A0A1W2PR82 267 aa20.39■□□□□ 0.85
BEST3-201ENST00000266661 SMARCA4P51532 1647 aa20.37■□□□□ 0.85
BEST3-201ENST00000266661 MROH2BQ7Z745 1585 aa20.34■□□□□ 0.85
BEST3-201ENST00000266661 PCGF6Q9BYE7 350 aa20.33■□□□□ 0.84
BEST3-201ENST00000266661 BAZ1AQ9NRL2 1556 aaPredicted RBP20.31■□□□□ 0.84
BEST3-201ENST00000266661 WIZO95785 1651 aa20.19■□□□□ 0.82
BEST3-201ENST00000266661 ATAD2BQ9ULI0 1458 aa20.17■□□□□ 0.82
BEST3-201ENST00000266661 TRIM41Q8WV44 630 aa20.11■□□□□ 0.81
BEST3-201ENST00000266661 SMARCA2P51531 1590 aa20.09■□□□□ 0.81
BEST3-201ENST00000266661 PEG3Q9GZU2 1588 aa20.07■□□□□ 0.8
BEST3-201ENST00000266661 NCAPD3P42695 1498 aa20.06■□□□□ 0.8
BEST3-201ENST00000266661 TRIM26Q12899 539 aaPredicted RBP20.05■□□□□ 0.8
BEST3-201ENST00000266661 BAZ1BQ9UIG0 1483 aaKnown RBP20.01■□□□□ 0.79
BEST3-201ENST00000266661 HMGXB3Q12766 1538 aa19.97■□□□□ 0.79
BEST3-201ENST00000266661 PPARGC1BQ86YN6 1023 aaKnown RBP19.94■□□□□ 0.78
BEST3-201ENST00000266661 TOP2AP11388 1531 aaKnown RBP19.83■□□□□ 0.77
BEST3-201ENST00000266661 FAM9AQ8IZU1 332 aaPredicted RBP19.83■□□□□ 0.76
BEST3-201ENST00000266661 CCDC88BA6NC98 1476 aa19.7■□□□□ 0.74
BEST3-201ENST00000266661 NESP48681 1621 aa19.7■□□□□ 0.74
BEST3-201ENST00000266661 ZEB1P37275 1124 aaPredicted RBP19.64■□□□□ 0.73
BEST3-201ENST00000266661 ABCC8Q09428 1581 aa19.58■□□□□ 0.73
BEST3-201ENST00000266661 EHMT2Q96KQ7 1210 aa19.54■□□□□ 0.72
BEST3-201ENST00000266661 CADPSQ9ULU8 1353 aa19.53■□□□□ 0.72
BEST3-201ENST00000266661 LAMC3Q9Y6N6 1575 aa19.5■□□□□ 0.71
BEST3-201ENST00000266661 WRNQ14191 1432 aaPredicted RBP eCLIP19.46■□□□□ 0.71
BEST3-201ENST00000266661 KIF21AQ7Z4S6 1674 aa19.46■□□□□ 0.71
BEST3-201ENST00000266661 CFTRP13569 1480 aa19.46■□□□□ 0.71
BEST3-201ENST00000266661 SOGA1O94964 1423 aa19.43■□□□□ 0.7
BEST3-201ENST00000266661 EEA1Q15075 1411 aa19.43■□□□□ 0.7
BEST3-201ENST00000266661 ERCC6Q03468 1493 aa19.41■□□□□ 0.7
BEST3-201ENST00000266661 TNIKQ9UKE5 1360 aa19.4■□□□□ 0.7
BEST3-201ENST00000266661 PRDM2Q13029 1718 aa19.39■□□□□ 0.69
BEST3-201ENST00000266661 CEP162Q5TB80 1403 aa19.35■□□□□ 0.69
BEST3-201ENST00000266661 PDS5BQ9NTI5 1447 aa19.35■□□□□ 0.69
BEST3-201ENST00000266661 RUSC2Q8N2Y8 1516 aa19.35■□□□□ 0.69
BEST3-201ENST00000266661 FANCD2Q9BXW9 1451 aa19.33■□□□□ 0.69
BEST3-201ENST00000266661 CSRNP3Q8WYN3 585 aa19.32■□□□□ 0.68
BEST3-201ENST00000266661 CEP164Q9UPV0 1460 aa19.26■□□□□ 0.67
BEST3-201ENST00000266661 THOC2Q8NI27 1593 aaKnown RBP19.24■□□□□ 0.67
BEST3-201ENST00000266661 GOLGA3Q08378 1498 aa19.23■□□□□ 0.67
BEST3-201ENST00000266661 SYNJ1O43426 1573 aa19.23■□□□□ 0.67
BEST3-201ENST00000266661 URB2Q14146 1524 aaKnown RBP19.17■□□□□ 0.66
BEST3-201ENST00000266661 KIF21BO75037 1637 aa19.16■□□□□ 0.66
BEST3-201ENST00000266661 MRC2Q9UBG0 1479 aa19.16■□□□□ 0.66
BEST3-201ENST00000266661 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.15■□□□□ 0.66
BEST3-201ENST00000266661 WDR62O43379 1518 aa19.1■□□□□ 0.65
BEST3-201ENST00000266661 UBTFP17480 764 aaKnown RBP19.09■□□□□ 0.65
BEST3-201ENST00000266661 CCER1Q8TC90 406 aaPredicted RBP19.07■□□□□ 0.64
BEST3-201ENST00000266661 TOPBP1Q92547 1522 aa19.06■□□□□ 0.64
BEST3-201ENST00000266661 CUX1P39880 1505 aa19.04■□□□□ 0.64
BEST3-201ENST00000266661 TOP2BQ02880 1626 aa19.03■□□□□ 0.64
BEST3-201ENST00000266661 DNMBPQ6XZF7 1577 aa19.02■□□□□ 0.64
BEST3-201ENST00000266661 CUX2O14529 1486 aa19■□□□□ 0.63
BEST3-201ENST00000266661 BIVM-ERCC5R4GMW8 1640 aa18.98■□□□□ 0.63
BEST3-201ENST00000266661 CLIP1P30622 1438 aa18.98■□□□□ 0.63
BEST3-201ENST00000266661 RAPGEF2Q9Y4G8 1499 aa18.97■□□□□ 0.63
BEST3-201ENST00000266661 VPS8Q8N3P4 1428 aa18.95■□□□□ 0.62
BEST3-201ENST00000266661 TTBK1Q5TCY1 1321 aaPredicted RBP18.93■□□□□ 0.62
BEST3-201ENST00000266661 FGD5Q6ZNL6 1462 aa18.93■□□□□ 0.62
BEST3-201ENST00000266661 POLA1P09884 1462 aaPredicted RBP18.92■□□□□ 0.62
BEST3-201ENST00000266661 RAD54L2Q9Y4B4 1467 aa18.92■□□□□ 0.62
BEST3-201ENST00000266661 PRXQ9BXM0 1461 aa18.87■□□□□ 0.61
BEST3-201ENST00000266661 ERICH3Q5RHP9 1530 aa18.86■□□□□ 0.61
BEST3-201ENST00000266661 ZNF608Q9ULD9 1512 aaPredicted RBP18.85■□□□□ 0.61
BEST3-201ENST00000266661 TARBP1Q13395 1621 aaKnown RBP18.85■□□□□ 0.61
BEST3-201ENST00000266661 SCAF1Q9H7N4 1312 aaKnown RBP18.84■□□□□ 0.61
BEST3-201ENST00000266661 IFT140Q96RY7 1462 aa18.8■□□□□ 0.6
BEST3-201ENST00000266661 AQRO60306 1485 aaKnown RBP eCLIP18.78■□□□□ 0.6
BEST3-201ENST00000266661 TDRD9Q8NDG6 1382 aaKnown RBP18.78■□□□□ 0.6
BEST3-201ENST00000266661 DIEXFQ68CQ4 756 aaKnown RBP18.77■□□□□ 0.6
BEST3-201ENST00000266661 WDR97A6NE52 1622 aa18.75■□□□□ 0.59
BEST3-201ENST00000266661 ARAP1Q96P48 1450 aa18.74■□□□□ 0.59
BEST3-201ENST00000266661 EIF4G3O43432 1585 aaKnown RBP18.74■□□□□ 0.59
BEST3-201ENST00000266661 KIF27Q86VH2 1401 aa18.69■□□□□ 0.58
BEST3-201ENST00000266661 ABCA10Q8WWZ4 1543 aa18.69■□□□□ 0.58
BEST3-201ENST00000266661 ZNF316A6NFI3 1004 aaPredicted RBP18.69■□□□□ 0.58
BEST3-201ENST00000266661 HNRNPUL2Q1KMD3 747 aaKnown RBP18.68■□□□□ 0.58
BEST3-201ENST00000266661 ACIN1Q9UKV3 1341 aaKnown RBP18.67■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms