RNA–Protein interactions for RNA: ENST00000265044.6

SSR3-201, Transcript of signal sequence receptor subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SSR3, Length 3,716 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSR3-201ENST00000265044 NISCHQ9Y2I1 1504 aa19.57■□□□□ 0.72
SSR3-201ENST00000265044 DCAF8L2P0C7V8 631 aa17.38■□□□□ 0.37
SSR3-201ENST00000265044 SHROOM4Q9ULL8 1493 aa16.87■□□□□ 0.29
SSR3-201ENST00000265044 CCDC180Q9P1Z9 1646 aa16.66■□□□□ 0.26
SSR3-201ENST00000265044 SUPT5HO00267 1087 aaKnown RBP16.48■□□□□ 0.23
SSR3-201ENST00000265044 ABCC9O60706 1549 aa16.43■□□□□ 0.22
SSR3-201ENST00000265044 ZCCHC6Q5VYS8 1495 aaKnown RBP16.35■□□□□ 0.21
SSR3-201ENST00000265044 DCAF1Q9Y4B6 1507 aa15.87■□□□□ 0.13
SSR3-201ENST00000265044 SCRIBQ14160 1630 aa15.85■□□□□ 0.13
SSR3-201ENST00000265044 PABPN1Q86U42 306 aaKnown RBP eCLIP15.79■□□□□ 0.12
SSR3-201ENST00000265044 NACADO15069 1562 aa15.75■□□□□ 0.11
SSR3-201ENST00000265044 RB1CC1Q8TDY2 1594 aa15.7■□□□□ 0.1
SSR3-201ENST00000265044 MYO15BQ96JP2 1530 aa15.6■□□□□ 0.09
SSR3-201ENST00000265044 CHIC1Q5VXU3 224 aa15.4■□□□□ 0.06
SSR3-201ENST00000265044 RSF1Q96T23 1441 aaPredicted RBP15.36■□□□□ 0.05
SSR3-201ENST00000265044 CECR2Q9BXF3 1484 aa15.36■□□□□ 0.05
SSR3-201ENST00000265044 TRIM41Q8WV44 630 aa15.35■□□□□ 0.05
SSR3-201ENST00000265044 EHMT2Q96KQ7 1210 aa15.35■□□□□ 0.05
SSR3-201ENST00000265044 FAM9AQ8IZU1 332 aaPredicted RBP15.33■□□□□ 0.05
SSR3-201ENST00000265044 MROH2BQ7Z745 1585 aa15.19■□□□□ 0.02
SSR3-201ENST00000265044 BAZ1AQ9NRL2 1556 aaPredicted RBP15.15■□□□□ 0.02
SSR3-201ENST00000265044 LOC105371045A0A1W2PR82 267 aa15.06■□□□□ 0
SSR3-201ENST00000265044 WIZO95785 1651 aa15.03■□□□□ -0
SSR3-201ENST00000265044 UNC13AQ9UPW8 1703 aa14.95□□□□□ -0.02
SSR3-201ENST00000265044 SMARCA4P51532 1647 aa14.95□□□□□ -0.02
SSR3-201ENST00000265044 BICRAQ9NZM4 1560 aa14.95□□□□□ -0.02
SSR3-201ENST00000265044 BAZ1BQ9UIG0 1483 aaKnown RBP14.93□□□□□ -0.02
SSR3-201ENST00000265044 UBTFP17480 764 aaKnown RBP14.85□□□□□ -0.03
SSR3-201ENST00000265044 CCDC88BA6NC98 1476 aa14.85□□□□□ -0.03
SSR3-201ENST00000265044 ATAD2BQ9ULI0 1458 aa14.83□□□□□ -0.04
SSR3-201ENST00000265044 RANGAP1P46060 587 aaPredicted RBP14.83□□□□□ -0.04
SSR3-201ENST00000265044 TOP2AP11388 1531 aaKnown RBP14.82□□□□□ -0.04
SSR3-201ENST00000265044 SMARCA2P51531 1590 aa14.8□□□□□ -0.04
SSR3-201ENST00000265044 EIF4G1Q04637 1599 aaKnown RBP14.72□□□□□ -0.05
SSR3-201ENST00000265044 PCGF6Q9BYE7 350 aa14.7□□□□□ -0.06
SSR3-201ENST00000265044 TTBK1Q5TCY1 1321 aaPredicted RBP14.7□□□□□ -0.06
SSR3-201ENST00000265044 CSRNP3Q8WYN3 585 aa14.64□□□□□ -0.07
SSR3-201ENST00000265044 PPARGC1BQ86YN6 1023 aaKnown RBP14.64□□□□□ -0.07
SSR3-201ENST00000265044 ABCC8Q09428 1581 aa14.64□□□□□ -0.07
SSR3-201ENST00000265044 WRNQ14191 1432 aaPredicted RBP eCLIP14.64□□□□□ -0.076e-6■□□□□ 9
SSR3-201ENST00000265044 NCAPD3P42695 1498 aa14.6□□□□□ -0.07
SSR3-201ENST00000265044 APLP2Q06481 763 aa14.59□□□□□ -0.07
SSR3-201ENST00000265044 CC2D2AQ9P2K1 1620 aa14.5□□□□□ -0.09
SSR3-201ENST00000265044 PEG3Q9GZU2 1588 aa14.5□□□□□ -0.09
SSR3-201ENST00000265044 SOGA1O94964 1423 aa14.49□□□□□ -0.09
SSR3-201ENST00000265044 CADPSQ9ULU8 1353 aa14.48□□□□□ -0.09
SSR3-201ENST00000265044 ATP1B4Q9UN42 357 aaPredicted RBP14.46□□□□□ -0.09
SSR3-201ENST00000265044 HMGXB3Q12766 1538 aa14.45□□□□□ -0.1
SSR3-201ENST00000265044 TRIM26Q12899 539 aaPredicted RBP14.42□□□□□ -0.1
SSR3-201ENST00000265044 DNAJC5BQ9UF47 199 aa14.41□□□□□ -0.1
SSR3-201ENST00000265044 EEA1Q15075 1411 aa14.39□□□□□ -0.11
SSR3-201ENST00000265044 RUSC2Q8N2Y8 1516 aa14.35□□□□□ -0.11
SSR3-201ENST00000265044 CFTRP13569 1480 aa14.33□□□□□ -0.11
SSR3-201ENST00000265044 KIF27Q86VH2 1401 aa14.31□□□□□ -0.12
SSR3-201ENST00000265044 FANCD2Q9BXW9 1451 aa14.3□□□□□ -0.12
SSR3-201ENST00000265044 NESP48681 1621 aa14.29□□□□□ -0.12
SSR3-201ENST00000265044 PDS5BQ9NTI5 1447 aa14.29□□□□□ -0.12
SSR3-201ENST00000265044 GOLGA3Q08378 1498 aa14.28□□□□□ -0.12
SSR3-201ENST00000265044 P3H3Q8IVL6 736 aa14.27□□□□□ -0.13
SSR3-201ENST00000265044 CUX2O14529 1486 aa14.26□□□□□ -0.13
SSR3-201ENST00000265044 SYNJ1O43426 1573 aa14.26□□□□□ -0.13
SSR3-201ENST00000265044 FBLN2P98095 1184 aa14.26□□□□□ -0.13
SSR3-201ENST00000265044 CEP162Q5TB80 1403 aa14.25□□□□□ -0.13
SSR3-201ENST00000265044 CEP164Q9UPV0 1460 aa14.25□□□□□ -0.13
SSR3-201ENST00000265044 TNIKQ9UKE5 1360 aa14.24□□□□□ -0.13
SSR3-201ENST00000265044 ERCC6Q03468 1493 aa14.22□□□□□ -0.13
SSR3-201ENST00000265044 CLIP1P30622 1438 aa14.2□□□□□ -0.14
SSR3-201ENST00000265044 TDRD9Q8NDG6 1382 aaKnown RBP14.17□□□□□ -0.14
SSR3-201ENST00000265044 CUX1P39880 1505 aa14.16□□□□□ -0.14
SSR3-201ENST00000265044 CCER1Q8TC90 406 aaPredicted RBP14.15□□□□□ -0.14
SSR3-201ENST00000265044 CARMIL1Q5VZK9 1371 aa14.15□□□□□ -0.14
SSR3-201ENST00000265044 FGD5Q6ZNL6 1462 aa14.15□□□□□ -0.14
SSR3-201ENST00000265044 HNRNPUL2Q1KMD3 747 aaKnown RBP14.15□□□□□ -0.14
SSR3-201ENST00000265044 RAPGEF2Q9Y4G8 1499 aa14.13□□□□□ -0.15
SSR3-201ENST00000265044 TOP2BQ02880 1626 aa14.13□□□□□ -0.15
SSR3-201ENST00000265044 ITGAEP38570 1179 aa14.12□□□□□ -0.15
SSR3-201ENST00000265044 RAD54L2Q9Y4B4 1467 aa14.11□□□□□ -0.15
SSR3-201ENST00000265044 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.11□□□□□ -0.15
SSR3-201ENST00000265044 HRCP23327 699 aa14.07□□□□□ -0.16
SSR3-201ENST00000265044 IGF1RP08069 1367 aa14.06□□□□□ -0.16
SSR3-201ENST00000265044 CHMP7Q8WUX9 453 aaPredicted RBP14.05□□□□□ -0.16
SSR3-201ENST00000265044 ARID3CA6NKF2 412 aa14.04□□□□□ -0.16
SSR3-201ENST00000265044 LAMC3Q9Y6N6 1575 aa14.04□□□□□ -0.16
SSR3-201ENST00000265044 TOPBP1Q92547 1522 aa14.04□□□□□ -0.16
SSR3-201ENST00000265044 POLA1P09884 1462 aaPredicted RBP14.01□□□□□ -0.17
SSR3-201ENST00000265044 ZEB1P37275 1124 aaPredicted RBP13.99□□□□□ -0.17
SSR3-201ENST00000265044 DNMBPQ6XZF7 1577 aa13.97□□□□□ -0.17
SSR3-201ENST00000265044 BIVM-ERCC5R4GMW8 1640 aa13.96□□□□□ -0.17
SSR3-201ENST00000265044 FAM50AQ14320 339 aaKnown RBP13.96□□□□□ -0.17
SSR3-201ENST00000265044 GAPVD1Q14C86 1478 aa13.94□□□□□ -0.18
SSR3-201ENST00000265044 URB2Q14146 1524 aaKnown RBP13.94□□□□□ -0.18
SSR3-201ENST00000265044 VPS8Q8N3P4 1428 aa13.93□□□□□ -0.18
SSR3-201ENST00000265044 AQRO60306 1485 aaKnown RBP eCLIP13.93□□□□□ -0.182e-6■■■■■ 30.2
SSR3-201ENST00000265044 PRXQ9BXM0 1461 aa13.93□□□□□ -0.18
SSR3-201ENST00000265044 KIF21BO75037 1637 aa13.92□□□□□ -0.18
SSR3-201ENST00000265044 MRC2Q9UBG0 1479 aa13.92□□□□□ -0.18
SSR3-201ENST00000265044 ABCA10Q8WWZ4 1543 aa13.86□□□□□ -0.19
SSR3-201ENST00000265044 KANK4Q5T7N3 995 aaPredicted RBP13.86□□□□□ -0.19
SSR3-201ENST00000265044 ERICH3Q5RHP9 1530 aa13.85□□□□□ -0.19
SSR3-201ENST00000265044 FHOD3Q2V2M9 1422 aa13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms