RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 NISCHQ9Y2I1 1504 aa21.28■■□□□ 1
LIG3-201ENST00000262327 CCDC180Q9P1Z9 1646 aa18.63■□□□□ 0.57
LIG3-201ENST00000262327 ZCCHC6Q5VYS8 1495 aaKnown RBP17.86■□□□□ 0.45
LIG3-201ENST00000262327 SHROOM4Q9ULL8 1493 aa17.72■□□□□ 0.43
LIG3-201ENST00000262327 DCAF1Q9Y4B6 1507 aa17.66■□□□□ 0.42
LIG3-201ENST00000262327 ABCC9O60706 1549 aa17.58■□□□□ 0.4
LIG3-201ENST00000262327 MYO15BQ96JP2 1530 aa17.5■□□□□ 0.39
LIG3-201ENST00000262327 DCAF8L2P0C7V8 631 aa17.49■□□□□ 0.39
LIG3-201ENST00000262327 SUPT5HO00267 1087 aaKnown RBP17.46■□□□□ 0.38
LIG3-201ENST00000262327 NACADO15069 1562 aa17.37■□□□□ 0.37
LIG3-201ENST00000262327 RB1CC1Q8TDY2 1594 aa17.22■□□□□ 0.35
LIG3-201ENST00000262327 SCRIBQ14160 1630 aa17.02■□□□□ 0.32
LIG3-201ENST00000262327 CHIC1Q5VXU3 224 aa16.87■□□□□ 0.29
LIG3-201ENST00000262327 UNC13AQ9UPW8 1703 aa16.79■□□□□ 0.28
LIG3-201ENST00000262327 PCGF6Q9BYE7 350 aa16.67■□□□□ 0.26
LIG3-201ENST00000262327 BICRAQ9NZM4 1560 aa16.66■□□□□ 0.26
LIG3-201ENST00000262327 HRCP23327 699 aa16.61■□□□□ 0.25
LIG3-201ENST00000262327 LOC105371045A0A1W2PR82 267 aa16.56■□□□□ 0.24
LIG3-201ENST00000262327 PABPN1Q86U42 306 aaKnown RBP eCLIP16.54■□□□□ 0.24
LIG3-201ENST00000262327 PPARGC1BQ86YN6 1023 aaKnown RBP16.49■□□□□ 0.23
LIG3-201ENST00000262327 CECR2Q9BXF3 1484 aa16.49■□□□□ 0.23
LIG3-201ENST00000262327 RSF1Q96T23 1441 aaPredicted RBP16.46■□□□□ 0.23
LIG3-201ENST00000262327 BAZ1AQ9NRL2 1556 aaPredicted RBP16.45■□□□□ 0.22
LIG3-201ENST00000262327 MROH2BQ7Z745 1585 aa16.4■□□□□ 0.22
LIG3-201ENST00000262327 SMARCA4P51532 1647 aa16.36■□□□□ 0.21
LIG3-201ENST00000262327 WIZO95785 1651 aa16.24■□□□□ 0.19
LIG3-201ENST00000262327 EHMT2Q96KQ7 1210 aa16.24■□□□□ 0.19
LIG3-201ENST00000262327 PEG3Q9GZU2 1588 aa16.21■□□□□ 0.19
LIG3-201ENST00000262327 FAM9AQ8IZU1 332 aaPredicted RBP16.2■□□□□ 0.18
LIG3-201ENST00000262327 EIF4G1Q04637 1599 aaKnown RBP16.17■□□□□ 0.18
LIG3-201ENST00000262327 PELP1Q8IZL8 1130 aaKnown RBP16.14■□□□□ 0.17
LIG3-201ENST00000262327 SMARCA2P51531 1590 aa16.14■□□□□ 0.17
LIG3-201ENST00000262327 TOP2AP11388 1531 aaKnown RBP16.13■□□□□ 0.17
LIG3-201ENST00000262327 ATAD2BQ9ULI0 1458 aa16.12■□□□□ 0.17
LIG3-201ENST00000262327 TRIM26Q12899 539 aaPredicted RBP16.11■□□□□ 0.17
LIG3-201ENST00000262327 TRIM41Q8WV44 630 aa16.1■□□□□ 0.17
LIG3-201ENST00000262327 NCAPD3P42695 1498 aa16.02■□□□□ 0.16
LIG3-201ENST00000262327 BAZ1BQ9UIG0 1483 aaKnown RBP16.02■□□□□ 0.15
LIG3-201ENST00000262327 HMGXB3Q12766 1538 aa16■□□□□ 0.15
LIG3-201ENST00000262327 CCDC88BA6NC98 1476 aa15.94■□□□□ 0.14
LIG3-201ENST00000262327 CC2D2AQ9P2K1 1620 aa15.93■□□□□ 0.14
LIG3-201ENST00000262327 ZEB1P37275 1124 aaPredicted RBP15.71■□□□□ 0.11
LIG3-201ENST00000262327 TTBK1Q5TCY1 1321 aaPredicted RBP15.71■□□□□ 0.11
LIG3-201ENST00000262327 MYT1Q01538 1121 aa15.67■□□□□ 0.1
LIG3-201ENST00000262327 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.64■□□□□ 0.09
LIG3-201ENST00000262327 CFTRP13569 1480 aa15.63■□□□□ 0.09
LIG3-201ENST00000262327 CADPSQ9ULU8 1353 aa15.59■□□□□ 0.09
LIG3-201ENST00000262327 CCER1Q8TC90 406 aaPredicted RBP15.54■□□□□ 0.08
LIG3-201ENST00000262327 DNAJC5BQ9UF47 199 aa15.54■□□□□ 0.08
LIG3-201ENST00000262327 PRDM2Q13029 1718 aa15.54■□□□□ 0.08
LIG3-201ENST00000262327 ABCC8Q09428 1581 aa15.53■□□□□ 0.08
LIG3-201ENST00000262327 SCAF1Q9H7N4 1312 aaKnown RBP15.5■□□□□ 0.07
LIG3-201ENST00000262327 WRNQ14191 1432 aaPredicted RBP eCLIP15.5■□□□□ 0.07
LIG3-201ENST00000262327 LAMC3Q9Y6N6 1575 aa15.48■□□□□ 0.07
LIG3-201ENST00000262327 SYNJ1O43426 1573 aa15.41■□□□□ 0.06
LIG3-201ENST00000262327 NESP48681 1621 aa15.4■□□□□ 0.06
LIG3-201ENST00000262327 TOP2BQ02880 1626 aa15.39■□□□□ 0.05
LIG3-201ENST00000262327 FANCD2Q9BXW9 1451 aa15.39■□□□□ 0.05
LIG3-201ENST00000262327 BIVM-ERCC5R4GMW8 1640 aa15.39■□□□□ 0.05
LIG3-201ENST00000262327 SOGA1O94964 1423 aa15.38■□□□□ 0.05
LIG3-201ENST00000262327 UBTFP17480 764 aaKnown RBP15.38■□□□□ 0.05
LIG3-201ENST00000262327 PDS5BQ9NTI5 1447 aa15.37■□□□□ 0.05
LIG3-201ENST00000262327 CUX1P39880 1505 aa15.35■□□□□ 0.05
LIG3-201ENST00000262327 RUSC2Q8N2Y8 1516 aa15.32■□□□□ 0.04
LIG3-201ENST00000262327 CEP164Q9UPV0 1460 aa15.32■□□□□ 0.04
LIG3-201ENST00000262327 CEP162Q5TB80 1403 aa15.31■□□□□ 0.04
LIG3-201ENST00000262327 EEA1Q15075 1411 aa15.3■□□□□ 0.04
LIG3-201ENST00000262327 NEUROD1Q13562 356 aa15.29■□□□□ 0.04
LIG3-201ENST00000262327 DIEXFQ68CQ4 756 aaKnown RBP15.28■□□□□ 0.04
LIG3-201ENST00000262327 CSRNP3Q8WYN3 585 aa15.28■□□□□ 0.04
LIG3-201ENST00000262327 RANGAP1P46060 587 aaPredicted RBP15.27■□□□□ 0.03
LIG3-201ENST00000262327 DNMBPQ6XZF7 1577 aa15.27■□□□□ 0.03
LIG3-201ENST00000262327 KIF21AQ7Z4S6 1674 aa15.23■□□□□ 0.03
LIG3-201ENST00000262327 TOPBP1Q92547 1522 aa15.23■□□□□ 0.03
LIG3-201ENST00000262327 ACIN1Q9UKV3 1341 aaKnown RBP15.22■□□□□ 0.03
LIG3-201ENST00000262327 HNRNPUL2Q1KMD3 747 aaKnown RBP15.21■□□□□ 0.03
LIG3-201ENST00000262327 TNIKQ9UKE5 1360 aa15.2■□□□□ 0.02
LIG3-201ENST00000262327 URB2Q14146 1524 aaKnown RBP15.2■□□□□ 0.02
LIG3-201ENST00000262327 FGD5Q6ZNL6 1462 aa15.19■□□□□ 0.02
LIG3-201ENST00000262327 MRC2Q9UBG0 1479 aa15.16■□□□□ 0.02
LIG3-201ENST00000262327 GTF3C3Q9Y5Q9 886 aa15.15■□□□□ 0.02
LIG3-201ENST00000262327 YTHDC1Q96MU7 727 aaKnown RBP15.13■□□□□ 0.01
LIG3-201ENST00000262327 KIF27Q86VH2 1401 aa15.13■□□□□ 0.01
LIG3-201ENST00000262327 POLA1P09884 1462 aaPredicted RBP15.13■□□□□ 0.01
LIG3-201ENST00000262327 ERCC6Q03468 1493 aa15.1■□□□□ 0.01
LIG3-201ENST00000262327 ABCA10Q8WWZ4 1543 aa15.09■□□□□ 0.01
LIG3-201ENST00000262327 WDR62O43379 1518 aa15.08■□□□□ 0.01
LIG3-201ENST00000262327 CUX2O14529 1486 aa15.08■□□□□ 0
LIG3-201ENST00000262327 GOLGA3Q08378 1498 aa15.08■□□□□ 0
LIG3-201ENST00000262327 CENPBP07199 599 aaPredicted RBP15.07■□□□□ 0
LIG3-201ENST00000262327 KIF21BO75037 1637 aa15.07■□□□□ 0
LIG3-201ENST00000262327 ZNF316A6NFI3 1004 aaPredicted RBP15.07■□□□□ 0
LIG3-201ENST00000262327 RAD54L2Q9Y4B4 1467 aa15.05■□□□□ 0
LIG3-201ENST00000262327 THOC2Q8NI27 1593 aaKnown RBP15.03■□□□□ -0
LIG3-201ENST00000262327 WDR97A6NE52 1622 aa15.03■□□□□ -0
LIG3-201ENST00000262327 PRXQ9BXM0 1461 aa15.01□□□□□ -0.01
LIG3-201ENST00000262327 TARBP1Q13395 1621 aaKnown RBP15□□□□□ -0.01
LIG3-201ENST00000262327 APLP2Q06481 763 aa15□□□□□ -0.01
LIG3-201ENST00000262327 CLIP1P30622 1438 aa15□□□□□ -0.01
LIG3-201ENST00000262327 IGF1RP08069 1367 aa14.99□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms