RNA–Protein interactions for RNA: ENSMUST00000193839.5

Pcdha1-202, Transcript of Protocadherin alpha 1, mousemouse

APPRIS ALT2 TSL 1 (best) BASIC

Gene Pcdha1, Length 4,925 nt, Biotype protein coding.

RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdha1-202ENSMUST00000193839 Rhox8Q6VSS7 320 aa24.94■■□□□ 1.58
Pcdha1-202ENSMUST00000193839 NischQ80TM9 1593 aa23.77■■□□□ 1.4
Pcdha1-202ENSMUST00000193839 Rpgrip1Q9EPQ2 1331 aa22.99■■□□□ 1.27
Pcdha1-202ENSMUST00000193839 Abcc9P70170 1546 aa22.47■■□□□ 1.19
Pcdha1-202ENSMUST00000193839 Ccdc136Q3TVA9 1136 aa22.4■■□□□ 1.18
Pcdha1-202ENSMUST00000193839 Trim41Q5NCC3 630 aa22.21■■□□□ 1.15
Pcdha1-202ENSMUST00000193839 Esf1Q3V1V3 845 aaKnown RBP22.16■■□□□ 1.14
Pcdha1-202ENSMUST00000193839 Abcc8B2RUS7 1588 aa22.05■■□□□ 1.12
Pcdha1-202ENSMUST00000193839 Cngb1E1AZ71 1325 aa22.02■■□□□ 1.12
Pcdha1-202ENSMUST00000193839 Gm35339A0A140LHH9 1649 aa21.73■■□□□ 1.07
Pcdha1-202ENSMUST00000193839 Las1lA2BE28 776 aaKnown RBP21.71■■□□□ 1.07
Pcdha1-202ENSMUST00000193839 Rtl1Q7M732 1744 aa21.59■■□□□ 1.05
Pcdha1-202ENSMUST00000193839 Ccdc180J3QNE4 1664 aa21.55■■□□□ 1.04
Pcdha1-202ENSMUST00000193839 Ehmt2Q9Z148 1263 aaKnown RBP21.53■■□□□ 1.04
Pcdha1-202ENSMUST00000193839 Gab3Q8BSM5 595 aa21.53■■□□□ 1.04
Pcdha1-202ENSMUST00000193839 Zcchc6Q5BLK4 1491 aaKnown RBP21.48■■□□□ 1.03
Pcdha1-202ENSMUST00000193839 Npm2Q80W85 207 aa21.44■■□□□ 1.02
Pcdha1-202ENSMUST00000193839 Zeb1Q64318 1117 aa21.4■■□□□ 1.02
Pcdha1-202ENSMUST00000193839 HrcG5E8J6 738 aa21.33■■□□□ 1.01
Pcdha1-202ENSMUST00000193839 Myt1lP97500 1187 aa21.17■□□□□ 0.98
Pcdha1-202ENSMUST00000193839 Acin1Q9JIX8 1338 aaKnown RBP21.13■□□□□ 0.97
Pcdha1-202ENSMUST00000193839 Ube2uB1AUC4 352 aa20.88■□□□□ 0.93
Pcdha1-202ENSMUST00000193839 Il27Q8K3I6 234 aa20.87■□□□□ 0.93
Pcdha1-202ENSMUST00000193839 Rb1cc1Q9ESK9 1588 aa20.86■□□□□ 0.93
Pcdha1-202ENSMUST00000193839 Pelp1Q9DBD5 1123 aaKnown RBP20.84■□□□□ 0.93
Pcdha1-202ENSMUST00000193839 NacadQ5SWP3 1504 aa20.82■□□□□ 0.92
Pcdha1-202ENSMUST00000193839 Wdr66E9Q743 1299 aa20.75■□□□□ 0.91
Pcdha1-202ENSMUST00000193839 Brd4Q9ESU6 1400 aaKnown RBP20.69■□□□□ 0.9
Pcdha1-202ENSMUST00000193839 NefmP08553 848 aa20.68■□□□□ 0.9
Pcdha1-202ENSMUST00000193839 UbtfP25976 765 aaKnown RBP20.62■□□□□ 0.89
Pcdha1-202ENSMUST00000193839 CenpbP27790 599 aa20.59■□□□□ 0.89
Pcdha1-202ENSMUST00000193839 Dcaf1Q80TR8 1506 aa20.55■□□□□ 0.88
Pcdha1-202ENSMUST00000193839 Myt1Q8CFC2 1127 aa20.52■□□□□ 0.88
Pcdha1-202ENSMUST00000193839 Baz1aO88379 1555 aa20.5■□□□□ 0.87
Pcdha1-202ENSMUST00000193839 Npm1Q61937 292 aaKnown RBP20.43■□□□□ 0.86
Pcdha1-202ENSMUST00000193839 Kdm5dQ62240 1548 aa20.39■□□□□ 0.85
Pcdha1-202ENSMUST00000193839 Pcgf6Q99NA9 353 aa20.38■□□□□ 0.85
Pcdha1-202ENSMUST00000193839 Ap3b1Q9Z1T1 1105 aa20.23■□□□□ 0.83
Pcdha1-202ENSMUST00000193839 Stra8P70278 393 aa20.22■□□□□ 0.83
Pcdha1-202ENSMUST00000193839 Cep164Q5DU05 1446 aa20.22■□□□□ 0.83
Pcdha1-202ENSMUST00000193839 Fam50aQ9WV03 339 aaKnown RBP20.09■□□□□ 0.81
Pcdha1-202ENSMUST00000193839 Chic1Q8CBW7 227 aa20.07■□□□□ 0.8
Pcdha1-202ENSMUST00000193839 Ubl4bQ9CQ84 188 aa20.06■□□□□ 0.8
Pcdha1-202ENSMUST00000193839 Cdk11bP24788 784 aaKnown RBP20.05■□□□□ 0.8
Pcdha1-202ENSMUST00000193839 Golga3P55937 1487 aa19.96■□□□□ 0.79
Pcdha1-202ENSMUST00000193839 Sycp2Q9CUU3 1500 aa19.95■□□□□ 0.78
Pcdha1-202ENSMUST00000193839 Tnnt3Q9QZ47 272 aa19.93■□□□□ 0.78
Pcdha1-202ENSMUST00000193839 Crybg2B7ZCC2 1516 aa19.92■□□□□ 0.78
Pcdha1-202ENSMUST00000193839 Ercc6F8VPZ5 1481 aa19.89■□□□□ 0.77
Pcdha1-202ENSMUST00000193839 ScribQ80U72 1612 aa19.85■□□□□ 0.77
Pcdha1-202ENSMUST00000193839 Rsf1E9PWW9 1441 aaKnown RBP19.85■□□□□ 0.77
Pcdha1-202ENSMUST00000193839 Mier1Q5UAK0 511 aa19.84■□□□□ 0.77
Pcdha1-202ENSMUST00000193839 Plekhg3Q4VAC9 1341 aa19.84■□□□□ 0.77
Pcdha1-202ENSMUST00000193839 NclP09405 707 aaKnown RBP19.83■□□□□ 0.77
Pcdha1-202ENSMUST00000193839 Clip1Q922J3 1391 aa19.82■□□□□ 0.76
Pcdha1-202ENSMUST00000193839 Lmod2Q3UHZ5 550 aa19.81■□□□□ 0.76
Pcdha1-202ENSMUST00000193839 Pds5bQ4VA53 1446 aaKnown RBP19.8■□□□□ 0.76
Pcdha1-202ENSMUST00000193839 Nop58Q6DFW4 536 aaKnown RBP19.8■□□□□ 0.76
Pcdha1-202ENSMUST00000193839 Supt5hO55201 1082 aaKnown RBP19.79■□□□□ 0.76
Pcdha1-202ENSMUST00000193839 TonslQ6NZL6 1363 aa19.76■□□□□ 0.75
Pcdha1-202ENSMUST00000193839 Kif15Q6P9L6 1387 aa19.75■□□□□ 0.75
Pcdha1-202ENSMUST00000193839 Rtl5Q5DTT4 599 aa19.66■□□□□ 0.74
Pcdha1-202ENSMUST00000193839 Ccdc18Q640L5 1455 aa19.63■□□□□ 0.73
Pcdha1-202ENSMUST00000193839 Neurod1Q60867 357 aa19.63■□□□□ 0.73
Pcdha1-202ENSMUST00000193839 Anp32bQ9EST5 272 aaKnown RBP19.58■□□□□ 0.73
Pcdha1-202ENSMUST00000193839 Amer1Q7TS75 1132 aa19.56■□□□□ 0.72
Pcdha1-202ENSMUST00000193839 Smarca2Q6DIC0 1577 aa19.53■□□□□ 0.72
Pcdha1-202ENSMUST00000193839 Slc24a1Q91WD8 1130 aa19.51■□□□□ 0.71
Pcdha1-202ENSMUST00000193839 Os9Q8K2C7 672 aa19.5■□□□□ 0.71
Pcdha1-202ENSMUST00000193839 Ccer2J3QPU5 274 aa19.48■□□□□ 0.71
Pcdha1-202ENSMUST00000193839 Setd5Q5XJV7 1441 aa19.46■□□□□ 0.71
Pcdha1-202ENSMUST00000193839 NrdcQ8BHG1 1161 aa19.46■□□□□ 0.71
Pcdha1-202ENSMUST00000193839 CftrP26361 1476 aa19.46■□□□□ 0.71
Pcdha1-202ENSMUST00000193839 Fmn1Q05860 1466 aa19.43■□□□□ 0.7
Pcdha1-202ENSMUST00000193839 ClspnQ80YR7 1315 aa19.42■□□□□ 0.7
Pcdha1-202ENSMUST00000193839 Atad2bE9Q166 1460 aaKnown RBP19.41■□□□□ 0.7
Pcdha1-202ENSMUST00000193839 Cecr2E9Q2Z1 1453 aa19.4■□□□□ 0.7
Pcdha1-202ENSMUST00000193839 BlmO88700 1416 aa19.4■□□□□ 0.7
Pcdha1-202ENSMUST00000193839 Fkbp15Q6P9Q6 1216 aaKnown RBP19.39■□□□□ 0.7
Pcdha1-202ENSMUST00000193839 Ifnlr1Q8CGK5 535 aa19.38■□□□□ 0.69
Pcdha1-202ENSMUST00000193839 Hnrnpul2Q00PI9 745 aaKnown RBP19.37■□□□□ 0.69
Pcdha1-202ENSMUST00000193839 Anks4bQ8K3X6 423 aa19.37■□□□□ 0.69
Pcdha1-202ENSMUST00000193839 Hdac5Q9Z2V6 1113 aa19.36■□□□□ 0.69
Pcdha1-202ENSMUST00000193839 Zbtb7cQ8VCZ7 619 aa19.34■□□□□ 0.69
Pcdha1-202ENSMUST00000193839 Eea1Q8BL66 1411 aa19.34■□□□□ 0.69
Pcdha1-202ENSMUST00000193839 Smarca4Q3TKT4 1613 aaKnown RBP19.31■□□□□ 0.68
Pcdha1-202ENSMUST00000193839 Ccdc88bQ4QRL3 1481 aa19.3■□□□□ 0.68
Pcdha1-202ENSMUST00000193839 Aplp2Q06335 707 aa19.26■□□□□ 0.67
Pcdha1-202ENSMUST00000193839 Ppargc1bQ8VHJ7 1014 aa19.26■□□□□ 0.67
Pcdha1-202ENSMUST00000193839 Synj1Q8CHC4 1574 aa19.24■□□□□ 0.67
Pcdha1-202ENSMUST00000193839 Eid3Q3V124 375 aa19.24■□□□□ 0.67
Pcdha1-202ENSMUST00000193839 Phldb1Q6PDH0 1371 aaKnown RBP19.23■□□□□ 0.67
Pcdha1-202ENSMUST00000193839 DiexfQ8BTT6 772 aaKnown RBP19.21■□□□□ 0.67
Pcdha1-202ENSMUST00000193839 Anp32aO35381 247 aa19.2■□□□□ 0.66
Pcdha1-202ENSMUST00000193839 Cttnbp2B9EJA2 1648 aa19.16■□□□□ 0.66
Pcdha1-202ENSMUST00000193839 Gm13697A2AK42 830 aa19.15■□□□□ 0.66
Pcdha1-202ENSMUST00000193839 Clstn2Q9ER65 966 aa19.15■□□□□ 0.66
Pcdha1-202ENSMUST00000193839 NeflP08551 543 aa19.14■□□□□ 0.65
Pcdha1-202ENSMUST00000193839 Cep162Q6ZQ06 1403 aa19.14■□□□□ 0.65
Pcdha1-202ENSMUST00000193839 Chic2Q9D9G3 165 aa19.13■□□□□ 0.65
Retrieved 100 of 22,080 RNA–protein pairs in 34 ms