RNA–Protein interactions for RNA: ENSMUST00000132214.7

Ccdc38-203, Transcript of Coiled-coil domain-containing protein 38, mousemouse

APPRIS ALT2 TSL 1 (best) BASIC

Gene Ccdc38, Length 2,222 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc38-203ENSMUST00000132214 Chic1Q8CBW7 227 aa17.59■□□□□ 0.41
Ccdc38-203ENSMUST00000132214 Mapk8ip2Q9ERE9 830 aa16.38■□□□□ 0.21
Ccdc38-203ENSMUST00000132214 Phf23Q8BSN5 401 aa16.2■□□□□ 0.18
Ccdc38-203ENSMUST00000132214 Plppr3Q7TPB0 716 aa16.15■□□□□ 0.18
Ccdc38-203ENSMUST00000132214 Kcna4Q61423 654 aa15.6■□□□□ 0.09
Ccdc38-203ENSMUST00000132214 Gab3Q8BSM5 595 aa15.56■□□□□ 0.08
Ccdc38-203ENSMUST00000132214 Senp3Q9EP97 568 aaKnown RBP15.09■□□□□ 0.01
Ccdc38-203ENSMUST00000132214 Ppargc1bQ8VHJ7 1014 aa14.56□□□□□ -0.08
Ccdc38-203ENSMUST00000132214 Ube2uB1AUC4 352 aa14.46□□□□□ -0.1
Ccdc38-203ENSMUST00000132214 Dmrt2Q8BG36 561 aa13.9□□□□□ -0.18
Ccdc38-203ENSMUST00000132214 Slc4a1apE9PX68 744 aa13.58□□□□□ -0.24
Ccdc38-203ENSMUST00000132214 Ehmt2Q9Z148 1263 aaKnown RBP13.36□□□□□ -0.27
Ccdc38-203ENSMUST00000132214 Fam71e1A1L3C1 212 aa13.32□□□□□ -0.28
Ccdc38-203ENSMUST00000132214 Trap1aP19473 224 aa13.2□□□□□ -0.3
Ccdc38-203ENSMUST00000132214 Atf5O70191 283 aa13.09□□□□□ -0.31
Ccdc38-203ENSMUST00000132214 Hoxd11P23813 323 aa12.89□□□□□ -0.35
Ccdc38-203ENSMUST00000132214 Pde4cQ3UEI1 686 aa12.78□□□□□ -0.36
Ccdc38-203ENSMUST00000132214 1700123L14RikQ3V2K7 440 aa12.77□□□□□ -0.37
Ccdc38-203ENSMUST00000132214 AcrbpQ3V140 540 aa12.73□□□□□ -0.37
Ccdc38-203ENSMUST00000132214 Nlrp6Q91WS2 869 aa12.7□□□□□ -0.38
Ccdc38-203ENSMUST00000132214 Ppp4r2Q0VGB7 417 aa12.66□□□□□ -0.38
Ccdc38-203ENSMUST00000132214 Tshz2Q68FE9 1030 aa12.58□□□□□ -0.39
Ccdc38-203ENSMUST00000132214 Cdca7Q9D0M2 382 aa12.54□□□□□ -0.4
Ccdc38-203ENSMUST00000132214 Hs6st3Q9QYK4 470 aa12.54□□□□□ -0.4
Ccdc38-203ENSMUST00000132214 Prdm10Q3UTQ7 1184 aa12.44□□□□□ -0.42
Ccdc38-203ENSMUST00000132214 Rtn4Q99P72 1162 aaKnown RBP12.42□□□□□ -0.42
Ccdc38-203ENSMUST00000132214 Dnajc5bQ9CQ94 199 aa12.38□□□□□ -0.43
Ccdc38-203ENSMUST00000132214 Chrna2Q91X60 512 aa12.37□□□□□ -0.43
Ccdc38-203ENSMUST00000132214 Ecm2Q5FW85 670 aa12.32□□□□□ -0.44
Ccdc38-203ENSMUST00000132214 Prm3Q62100 101 aa12.22□□□□□ -0.45
Ccdc38-203ENSMUST00000132214 Gm35339A0A140LHH9 1649 aa12.22□□□□□ -0.45
Ccdc38-203ENSMUST00000132214 Rsph4aQ8BYM7 716 aa12.2□□□□□ -0.46
Ccdc38-203ENSMUST00000132214 Znf219Q6IQX8 726 aa12.14□□□□□ -0.47
Ccdc38-203ENSMUST00000132214 Rimbp2Q80U40 1072 aa12.13□□□□□ -0.47
Ccdc38-203ENSMUST00000132214 Npm2Q80W85 207 aa12.12□□□□□ -0.47
Ccdc38-203ENSMUST00000132214 Bach1P97302 739 aa12.05□□□□□ -0.48
Ccdc38-203ENSMUST00000132214 Prdm16A2A935 1275 aa12.04□□□□□ -0.48
Ccdc38-203ENSMUST00000132214 Styxl1Q9DAR2 321 aa12.01□□□□□ -0.49
Ccdc38-203ENSMUST00000132214 Riok3Q9DBU3 519 aaKnown RBP11.99□□□□□ -0.49
Ccdc38-203ENSMUST00000132214 NischQ80TM9 1593 aa11.97□□□□□ -0.49
Ccdc38-203ENSMUST00000132214 Arid3aQ62431 601 aa11.95□□□□□ -0.5
Ccdc38-203ENSMUST00000132214 MyclP10166 368 aa11.91□□□□□ -0.5
Ccdc38-203ENSMUST00000132214 C1qtnf12Q8R2Z0 308 aa11.9□□□□□ -0.51
Ccdc38-203ENSMUST00000132214 Ms4a5Q810P8 197 aa11.83□□□□□ -0.52
Ccdc38-203ENSMUST00000132214 Taok2Q6ZQ29 1240 aa11.83□□□□□ -0.52
Ccdc38-203ENSMUST00000132214 Fam163aQ8CAA5 168 aa11.76□□□□□ -0.53
Ccdc38-203ENSMUST00000132214 WdpcpQ8C456 722 aa11.73□□□□□ -0.53
Ccdc38-203ENSMUST00000132214 Abcc9P70170 1546 aa11.72□□□□□ -0.53
Ccdc38-203ENSMUST00000132214 Abcc8B2RUS7 1588 aa11.65□□□□□ -0.54
Ccdc38-203ENSMUST00000132214 ArsiQ32KI9 573 aa11.58□□□□□ -0.56
Ccdc38-203ENSMUST00000132214 Tcf3P15806 651 aa11.54□□□□□ -0.56
Ccdc38-203ENSMUST00000132214 CatipB9EKE5 520 aa11.51□□□□□ -0.57
Ccdc38-203ENSMUST00000132214 Akt1s1Q9D1F4 257 aa11.44□□□□□ -0.58
Ccdc38-203ENSMUST00000132214 Slc34a2Q9DBP0 697 aa11.44□□□□□ -0.58
Ccdc38-203ENSMUST00000132214 Trim41Q5NCC3 630 aa11.42□□□□□ -0.58
Ccdc38-203ENSMUST00000132214 Sox12Q04890 314 aa11.38□□□□□ -0.59
Ccdc38-203ENSMUST00000132214 Ppp6r1Q7TSI3 856 aa11.37□□□□□ -0.59
Ccdc38-203ENSMUST00000132214 ScribQ80U72 1612 aa11.37□□□□□ -0.59
Ccdc38-203ENSMUST00000132214 Skap1Q3UUV5 355 aa11.36□□□□□ -0.59
Ccdc38-203ENSMUST00000132214 Esf1Q3V1V3 845 aaKnown RBP11.25□□□□□ -0.61
Ccdc38-203ENSMUST00000132214 Ppp1r37Q8BKR5 712 aa11.25□□□□□ -0.61
Ccdc38-203ENSMUST00000132214 MpndQ3TV65 487 aa11.21□□□□□ -0.62
Ccdc38-203ENSMUST00000132214 G430095P16RikE9Q913 147 aa11.19□□□□□ -0.62
Ccdc38-203ENSMUST00000132214 Zbtb22Q9Z0G7 638 aa11.14□□□□□ -0.63
Ccdc38-203ENSMUST00000132214 Mkrn3Q60764 544 aa11.12□□□□□ -0.63
Ccdc38-203ENSMUST00000132214 Npm3Q9CPP0 175 aaKnown RBP11.08□□□□□ -0.64
Ccdc38-203ENSMUST00000132214 Vsig10D3YX43 558 aa11.06□□□□□ -0.64
Ccdc38-203ENSMUST00000132214 Rpgrip1Q9EPQ2 1331 aa11.03□□□□□ -0.64
Ccdc38-203ENSMUST00000132214 NacadQ5SWP3 1504 aa11.03□□□□□ -0.64
Ccdc38-203ENSMUST00000132214 ArxO35085 564 aa11.03□□□□□ -0.64
Ccdc38-203ENSMUST00000132214 Slc4a2P13808 1237 aaKnown RBP11.01□□□□□ -0.65
Ccdc38-203ENSMUST00000132214 Fbln2P37889 1221 aa11.01□□□□□ -0.65
Ccdc38-203ENSMUST00000132214 Kdm5dQ62240 1548 aa10.96□□□□□ -0.65
Ccdc38-203ENSMUST00000132214 Spock2Q9ER58 423 aa10.94□□□□□ -0.66
Ccdc38-203ENSMUST00000132214 Zbtb7aO88939 569 aaKnown RBP10.92□□□□□ -0.66
Ccdc38-203ENSMUST00000132214 Myt1Q8CFC2 1127 aa10.91□□□□□ -0.66
Ccdc38-203ENSMUST00000132214 Zbtb38Q3LR78 1197 aa10.9□□□□□ -0.66
Ccdc38-203ENSMUST00000132214 Ifnlr1Q8CGK5 535 aa10.9□□□□□ -0.66
Ccdc38-203ENSMUST00000132214 Stag3O70576 1240 aa10.89□□□□□ -0.67
Ccdc38-203ENSMUST00000132214 Skida1Q80YR3 822 aa10.86□□□□□ -0.67
Ccdc38-203ENSMUST00000132214 Noa1Q9JJG9 693 aaKnown RBP10.85□□□□□ -0.67
Ccdc38-203ENSMUST00000132214 TimelessQ9R1X4 1197 aa10.85□□□□□ -0.67
Ccdc38-203ENSMUST00000132214 Zeb1Q64318 1117 aa10.84□□□□□ -0.67
Ccdc38-203ENSMUST00000132214 Ferd3lQ923Z4 168 aa10.82□□□□□ -0.68
Ccdc38-203ENSMUST00000132214 Sycp2Q9CUU3 1500 aa10.81□□□□□ -0.68
Ccdc38-203ENSMUST00000132214 Abcb7Q61102 752 aaKnown RBP10.8□□□□□ -0.68
Ccdc38-203ENSMUST00000132214 UbtfP25976 765 aaKnown RBP10.77□□□□□ -0.68
Ccdc38-203ENSMUST00000132214 Ttbk1Q6PCN3 1308 aa10.76□□□□□ -0.69
Ccdc38-203ENSMUST00000132214 Egfem1Q8C088 590 aa10.75□□□□□ -0.69
Ccdc38-203ENSMUST00000132214 Rgl2Q61193 778 aa10.74□□□□□ -0.69
Ccdc38-203ENSMUST00000132214 Ubap1lG3UW59 384 aa10.73□□□□□ -0.69
Ccdc38-203ENSMUST00000132214 Gtpbp6Q3U6U5 514 aa10.73□□□□□ -0.69
Ccdc38-203ENSMUST00000132214 MycnP03966 462 aaKnown RBP10.72□□□□□ -0.69
Ccdc38-203ENSMUST00000132214 Tmem132aQ922P8 1018 aa10.72□□□□□ -0.69
Ccdc38-203ENSMUST00000132214 Spryd3E9Q9B3 442 aa10.69□□□□□ -0.7
Ccdc38-203ENSMUST00000132214 Jarid2Q62315 1234 aa10.69□□□□□ -0.7
Ccdc38-203ENSMUST00000132214 DiexfQ8BTT6 772 aaKnown RBP10.69□□□□□ -0.7
Ccdc38-203ENSMUST00000132214 Fam117bQ3U3E2 584 aa10.69□□□□□ -0.7
Ccdc38-203ENSMUST00000132214 Repin1Q5U4E2 545 aa10.68□□□□□ -0.7
Ccdc38-203ENSMUST00000132214 Zbtb12Q9Z150 459 aa10.68□□□□□ -0.7
Retrieved 100 of 22,080 RNA–protein pairs in 12.2 ms