RNA–Protein interactions for RNA: ENSMUST00000085546.12

Hmgb1-201, Transcript of High mobility group protein B1, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Hmgb1, Length 2,838 nt, Biotype protein coding, Subcellular localisation Axon, Exosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb1-201ENSMUST00000085546 Rpgrip1Q9EPQ2 1331 aa17.2■□□□□ 0.34
Hmgb1-201ENSMUST00000085546 Pcgf6Q99NA9 353 aa16.35■□□□□ 0.21
Hmgb1-201ENSMUST00000085546 Acin1Q9JIX8 1338 aaKnown RBP16.3■□□□□ 0.2
Hmgb1-201ENSMUST00000085546 Rtl1Q7M732 1744 aa16.17■□□□□ 0.18
Hmgb1-201ENSMUST00000085546 Ccdc180J3QNE4 1664 aa16.02■□□□□ 0.16
Hmgb1-201ENSMUST00000085546 Myt1Q8CFC2 1127 aa15.98■□□□□ 0.15
Hmgb1-201ENSMUST00000085546 Las1lA2BE28 776 aaKnown RBP15.91■□□□□ 0.14
Hmgb1-201ENSMUST00000085546 CenpbP27790 599 aa15.74■□□□□ 0.11
Hmgb1-201ENSMUST00000085546 Neurod1Q60867 357 aa15.72■□□□□ 0.11
Hmgb1-201ENSMUST00000085546 Trim41Q5NCC3 630 aa15.69■□□□□ 0.1
Hmgb1-201ENSMUST00000085546 DiexfQ8BTT6 772 aaKnown RBP15.68■□□□□ 0.1
Hmgb1-201ENSMUST00000085546 NischQ80TM9 1593 aa15.61■□□□□ 0.09
Hmgb1-201ENSMUST00000085546 Dcaf1Q80TR8 1506 aa15.55■□□□□ 0.08
Hmgb1-201ENSMUST00000085546 Supt5hO55201 1082 aaKnown RBP15.53■□□□□ 0.08
Hmgb1-201ENSMUST00000085546 1700123L14RikQ3V2K7 440 aa15.53■□□□□ 0.08
Hmgb1-201ENSMUST00000085546 Bcl11aQ9QYE3 773 aa15.36■□□□□ 0.05
Hmgb1-201ENSMUST00000085546 Abcc9P70170 1546 aa15.3■□□□□ 0.04
Hmgb1-201ENSMUST00000085546 Gm35339A0A140LHH9 1649 aa15.3■□□□□ 0.04
Hmgb1-201ENSMUST00000085546 Ehmt2Q9Z148 1263 aaKnown RBP15.28■□□□□ 0.04
Hmgb1-201ENSMUST00000085546 Anks4bQ8K3X6 423 aa15.26■□□□□ 0.03
Hmgb1-201ENSMUST00000085546 Aplp2Q06335 707 aa15.22■□□□□ 0.03
Hmgb1-201ENSMUST00000085546 Zcchc6Q5BLK4 1491 aaKnown RBP15.2■□□□□ 0.02
Hmgb1-201ENSMUST00000085546 Csrnp3P59055 597 aa15.19■□□□□ 0.02
Hmgb1-201ENSMUST00000085546 Rhox8Q6VSS7 320 aa15.05■□□□□ 0
Hmgb1-201ENSMUST00000085546 Cngb1E1AZ71 1325 aa15□□□□□ -0.01
Hmgb1-201ENSMUST00000085546 HrcG5E8J6 738 aa14.98□□□□□ -0.01
Hmgb1-201ENSMUST00000085546 Amer1Q7TS75 1132 aa14.9□□□□□ -0.02
Hmgb1-201ENSMUST00000085546 PrkcshO08795 521 aa14.9□□□□□ -0.02
Hmgb1-201ENSMUST00000085546 Sall2Q9QX96 1004 aa14.8□□□□□ -0.04
Hmgb1-201ENSMUST00000085546 Zeb1Q64318 1117 aa14.74□□□□□ -0.05
Hmgb1-201ENSMUST00000085546 NefmP08553 848 aa14.7□□□□□ -0.06
Hmgb1-201ENSMUST00000085546 Abcc8B2RUS7 1588 aa14.65□□□□□ -0.06
Hmgb1-201ENSMUST00000085546 Cdk11bP24788 784 aaKnown RBP14.64□□□□□ -0.07
Hmgb1-201ENSMUST00000085546 Fam71e1A1L3C1 212 aa14.58□□□□□ -0.08
Hmgb1-201ENSMUST00000085546 Ifnlr1Q8CGK5 535 aa14.55□□□□□ -0.08
Hmgb1-201ENSMUST00000085546 Gm38655A0A286YDK6 273 aa14.54□□□□□ -0.08
Hmgb1-201ENSMUST00000085546 Nop58Q6DFW4 536 aaKnown RBP14.53□□□□□ -0.08
Hmgb1-201ENSMUST00000085546 Rtl5Q5DTT4 599 aa14.43□□□□□ -0.1
Hmgb1-201ENSMUST00000085546 ClspnQ80YR7 1315 aa14.36□□□□□ -0.11
Hmgb1-201ENSMUST00000085546 Hdac5Q9Z2V6 1113 aa14.3□□□□□ -0.12
Hmgb1-201ENSMUST00000085546 Fgd1P52734 960 aa14.28□□□□□ -0.12
Hmgb1-201ENSMUST00000085546 Mier1Q5UAK0 511 aa14.27□□□□□ -0.12
Hmgb1-201ENSMUST00000085546 Cep164Q5DU05 1446 aa14.27□□□□□ -0.13
Hmgb1-201ENSMUST00000085546 Tnnt3Q9QZ47 272 aa14.27□□□□□ -0.13
Hmgb1-201ENSMUST00000085546 NrdcQ8BHG1 1161 aa14.25□□□□□ -0.13
Hmgb1-201ENSMUST00000085546 Wdr66E9Q743 1299 aa14.23□□□□□ -0.13
Hmgb1-201ENSMUST00000085546 Pknox2Q8BG99 474 aa14.23□□□□□ -0.13
Hmgb1-201ENSMUST00000085546 Mapk8ip2Q9ERE9 830 aa14.23□□□□□ -0.13
Hmgb1-201ENSMUST00000085546 Aebp2Q9Z248 504 aaKnown RBP14.23□□□□□ -0.13
Hmgb1-201ENSMUST00000085546 Anp32aO35381 247 aa14.19□□□□□ -0.14
Hmgb1-201ENSMUST00000085546 Pelp1Q9DBD5 1123 aaKnown RBP14.17□□□□□ -0.14
Hmgb1-201ENSMUST00000085546 SafbD3YXK2 937 aaKnown RBP14.17□□□□□ -0.14
Hmgb1-201ENSMUST00000085546 Hnrnpul2Q00PI9 745 aaKnown RBP14.14□□□□□ -0.15
Hmgb1-201ENSMUST00000085546 Gtf3c3Q3TMP1 882 aa14.03□□□□□ -0.16
Hmgb1-201ENSMUST00000085546 Ccdc9Q8VC31 543 aaKnown RBP13.99□□□□□ -0.17
Hmgb1-201ENSMUST00000085546 Upf2A2AT37 1269 aaKnown RBP13.96□□□□□ -0.17
Hmgb1-201ENSMUST00000085546 Plcd4Q8K3R3 807 aa13.9□□□□□ -0.18
Hmgb1-201ENSMUST00000085546 Irx3P81067 507 aa13.89□□□□□ -0.19
Hmgb1-201ENSMUST00000085546 Nolc1E9Q5C9 702 aaKnown RBP13.87□□□□□ -0.19
Hmgb1-201ENSMUST00000085546 Supt16hQ920B9 1047 aa13.86□□□□□ -0.19
Hmgb1-201ENSMUST00000085546 CatipB9EKE5 520 aa13.85□□□□□ -0.19
Hmgb1-201ENSMUST00000085546 Ppargc1bQ8VHJ7 1014 aa13.85□□□□□ -0.19
Hmgb1-201ENSMUST00000085546 Ccdc27Q3V036 639 aa13.83□□□□□ -0.2
Hmgb1-201ENSMUST00000085546 Ipo4Q8VI75 1082 aa13.83□□□□□ -0.2
Hmgb1-201ENSMUST00000085546 Ccdc136Q3TVA9 1136 aa13.82□□□□□ -0.2
Hmgb1-201ENSMUST00000085546 Il27Q8K3I6 234 aa13.82□□□□□ -0.2
Hmgb1-201ENSMUST00000085546 TonslQ6NZL6 1363 aa13.79□□□□□ -0.2
Hmgb1-201ENSMUST00000085546 Znf710Q3U288 666 aa13.78□□□□□ -0.2
Hmgb1-201ENSMUST00000085546 Ttbk1Q6PCN3 1308 aa13.76□□□□□ -0.21
Hmgb1-201ENSMUST00000085546 Rb1cc1Q9ESK9 1588 aa13.75□□□□□ -0.21
Hmgb1-201ENSMUST00000085546 Stra8P70278 393 aa13.71□□□□□ -0.22
Hmgb1-201ENSMUST00000085546 Calr4Q3TQS0 420 aa13.7□□□□□ -0.22
Hmgb1-201ENSMUST00000085546 Ap3b1Q9Z1T1 1105 aa13.69□□□□□ -0.22
Hmgb1-201ENSMUST00000085546 Baz1aO88379 1555 aa13.69□□□□□ -0.22
Hmgb1-201ENSMUST00000085546 NacadQ5SWP3 1504 aa13.67□□□□□ -0.22
Hmgb1-201ENSMUST00000085546 Hsp90aa1P07901 733 aaKnown RBP13.63□□□□□ -0.23
Hmgb1-201ENSMUST00000085546 Kcnn1Q9EQR3 537 aa13.61□□□□□ -0.23
Hmgb1-201ENSMUST00000085546 Rsf1E9PWW9 1441 aaKnown RBP13.6□□□□□ -0.23
Hmgb1-201ENSMUST00000085546 Gtf3c5Q8R2T8 520 aa13.6□□□□□ -0.23
Hmgb1-201ENSMUST00000085546 BccipQ9CWI3 316 aa13.59□□□□□ -0.23
Hmgb1-201ENSMUST00000085546 Washc2Q6PGL7 1334 aa13.58□□□□□ -0.24
Hmgb1-201ENSMUST00000085546 Wdr43Q6ZQL4 677 aaKnown RBP13.55□□□□□ -0.24
Hmgb1-201ENSMUST00000085546 UbtfP25976 765 aaKnown RBP13.51□□□□□ -0.25
Hmgb1-201ENSMUST00000085546 Rpap1Q80TE0 1409 aa13.51□□□□□ -0.25
Hmgb1-201ENSMUST00000085546 Pak3Q61036 559 aa13.51□□□□□ -0.25
Hmgb1-201ENSMUST00000085546 Zfp777B9EKF4 885 aa13.5□□□□□ -0.25
Hmgb1-201ENSMUST00000085546 AampJ3QN89 436 aa13.5□□□□□ -0.25
Hmgb1-201ENSMUST00000085546 Myt1lP97500 1187 aa13.5□□□□□ -0.25
Hmgb1-201ENSMUST00000085546 Egfem1Q8C088 590 aa13.5□□□□□ -0.25
Hmgb1-201ENSMUST00000085546 Ppp4r2Q0VGB7 417 aa13.49□□□□□ -0.25
Hmgb1-201ENSMUST00000085546 Liat1Q810M6 228 aa13.49□□□□□ -0.25
Hmgb1-201ENSMUST00000085546 Gab3Q8BSM5 595 aa13.49□□□□□ -0.25
Hmgb1-201ENSMUST00000085546 NeflP08551 543 aa13.48□□□□□ -0.25
Hmgb1-201ENSMUST00000085546 Ipo9Q91YE6 1041 aa13.47□□□□□ -0.25
Hmgb1-201ENSMUST00000085546 Pdcl3Q8BVF2 240 aa13.47□□□□□ -0.25
Hmgb1-201ENSMUST00000085546 Smarca2Q6DIC0 1577 aa13.46□□□□□ -0.26
Hmgb1-201ENSMUST00000085546 Chic1Q8CBW7 227 aa13.45□□□□□ -0.26
Hmgb1-201ENSMUST00000085546 Znf316Q6PGE4 1016 aa13.44□□□□□ -0.26
Hmgb1-201ENSMUST00000085546 Crybg2B7ZCC2 1516 aa13.44□□□□□ -0.26
Hmgb1-201ENSMUST00000085546 Plppr3Q7TPB0 716 aa13.43□□□□□ -0.26
Retrieved 100 of 22,080 RNA–protein pairs in 45 ms