RNA–Protein interactions for RNA: ENSMUST00000035911.4

Rc3h1-201, Transcript of Roquin-1, mousemouse

APPRIS ALT2 TSL 5 BASIC

Gene Rc3h1, Length 3,476 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Rc3h1-201ENSMUST00000035911 Rpgrip1Q9EPQ2 1331 aa9.88□□□□□ -0.83
Rc3h1-201ENSMUST00000035911 Gm35339A0A140LHH9 1649 aa9.54□□□□□ -0.88
Rc3h1-201ENSMUST00000035911 NischQ80TM9 1593 aa9.53□□□□□ -0.88
Rc3h1-201ENSMUST00000035911 Acin1Q9JIX8 1338 aaKnown RBP9.43□□□□□ -0.9
Rc3h1-201ENSMUST00000035911 Pcgf6Q99NA9 353 aa9.39□□□□□ -0.91
Rc3h1-201ENSMUST00000035911 Rhox8Q6VSS7 320 aa9.35□□□□□ -0.91
Rc3h1-201ENSMUST00000035911 Ehmt2Q9Z148 1263 aaKnown RBP9.26□□□□□ -0.93
Rc3h1-201ENSMUST00000035911 Abcc9P70170 1546 aa9.25□□□□□ -0.93
Rc3h1-201ENSMUST00000035911 Ccdc180J3QNE4 1664 aa9.19□□□□□ -0.94
Rc3h1-201ENSMUST00000035911 Las1lA2BE28 776 aaKnown RBP9.19□□□□□ -0.94
Rc3h1-201ENSMUST00000035911 Rtl1Q7M732 1744 aa9.17□□□□□ -0.94
Rc3h1-201ENSMUST00000035911 Abcc8B2RUS7 1588 aa9.15□□□□□ -0.94
Rc3h1-201ENSMUST00000035911 Supt5hO55201 1082 aaKnown RBP9.06□□□□□ -0.96
Rc3h1-201ENSMUST00000035911 Neurod1Q60867 357 aa9.06□□□□□ -0.96
Rc3h1-201ENSMUST00000035911 Myt1Q8CFC2 1127 aa8.99□□□□□ -0.97
Rc3h1-201ENSMUST00000035911 CenpbP27790 599 aa8.98□□□□□ -0.97
Rc3h1-201ENSMUST00000035911 Ube2uB1AUC4 352 aa8.94□□□□□ -0.98
Rc3h1-201ENSMUST00000035911 Trim41Q5NCC3 630 aa8.93□□□□□ -0.98
Rc3h1-201ENSMUST00000035911 1700123L14RikQ3V2K7 440 aa8.89□□□□□ -0.99
Rc3h1-201ENSMUST00000035911 Dcaf1Q80TR8 1506 aa8.87□□□□□ -0.99
Rc3h1-201ENSMUST00000035911 DiexfQ8BTT6 772 aaKnown RBP8.86□□□□□ -0.99
Rc3h1-201ENSMUST00000035911 Zeb1Q64318 1117 aa8.85□□□□□ -0.99
Rc3h1-201ENSMUST00000035911 HrcG5E8J6 738 aa8.82□□□□□ -1
Rc3h1-201ENSMUST00000035911 Csrnp3P59055 597 aa8.81□□□□□ -1
Rc3h1-201ENSMUST00000035911 Anks4bQ8K3X6 423 aa8.78□□□□□ -1
Rc3h1-201ENSMUST00000035911 Cngb1E1AZ71 1325 aa8.77□□□□□ -1.01
Rc3h1-201ENSMUST00000035911 Aplp2Q06335 707 aa8.7□□□□□ -1.02
Rc3h1-201ENSMUST00000035911 Sall2Q9QX96 1004 aa8.67□□□□□ -1.02
Rc3h1-201ENSMUST00000035911 NefmP08553 848 aa8.66□□□□□ -1.02
Rc3h1-201ENSMUST00000035911 Chic1Q8CBW7 227 aa8.66□□□□□ -1.02
Rc3h1-201ENSMUST00000035911 Zcchc6Q5BLK4 1491 aaKnown RBP8.66□□□□□ -1.02
Rc3h1-201ENSMUST00000035911 Bcl11aQ9QYE3 773 aa8.65□□□□□ -1.02
Rc3h1-201ENSMUST00000035911 ScribQ80U72 1612 aa8.64□□□□□ -1.03
Rc3h1-201ENSMUST00000035911 Cdk11bP24788 784 aaKnown RBP8.61□□□□□ -1.03
Rc3h1-201ENSMUST00000035911 Wdr66E9Q743 1299 aa8.59□□□□□ -1.03
Rc3h1-201ENSMUST00000035911 Ccdc136Q3TVA9 1136 aa8.57□□□□□ -1.04
Rc3h1-201ENSMUST00000035911 Gm38655A0A286YDK6 273 aa8.57□□□□□ -1.04
Rc3h1-201ENSMUST00000035911 Nop58Q6DFW4 536 aaKnown RBP8.56□□□□□ -1.04
Rc3h1-201ENSMUST00000035911 Mier1Q5UAK0 511 aa8.48□□□□□ -1.05
Rc3h1-201ENSMUST00000035911 NacadQ5SWP3 1504 aa8.48□□□□□ -1.05
Rc3h1-201ENSMUST00000035911 Mapk8ip2Q9ERE9 830 aa8.47□□□□□ -1.05
Rc3h1-201ENSMUST00000035911 Amer1Q7TS75 1132 aa8.47□□□□□ -1.05
Rc3h1-201ENSMUST00000035911 Kdm5dQ62240 1548 aa8.44□□□□□ -1.06
Rc3h1-201ENSMUST00000035911 Fam71e1A1L3C1 212 aa8.44□□□□□ -1.06
Rc3h1-201ENSMUST00000035911 Kcna4Q61423 654 aa8.42□□□□□ -1.06
Rc3h1-201ENSMUST00000035911 PrkcshO08795 521 aa8.41□□□□□ -1.06
Rc3h1-201ENSMUST00000035911 Ppargc1bQ8VHJ7 1014 aa8.41□□□□□ -1.06
Rc3h1-201ENSMUST00000035911 ClspnQ80YR7 1315 aa8.4□□□□□ -1.06
Rc3h1-201ENSMUST00000035911 Aebp2Q9Z248 504 aaKnown RBP8.38□□□□□ -1.07
Rc3h1-201ENSMUST00000035911 Plppr3Q7TPB0 716 aa8.37□□□□□ -1.07
Rc3h1-201ENSMUST00000035911 Gab3Q8BSM5 595 aa8.35□□□□□ -1.07
Rc3h1-201ENSMUST00000035911 Tnnt3Q9QZ47 272 aa8.33□□□□□ -1.08
Rc3h1-201ENSMUST00000035911 Cep164Q5DU05 1446 aa8.33□□□□□ -1.08
Rc3h1-201ENSMUST00000035911 Pelp1Q9DBD5 1123 aaKnown RBP8.33□□□□□ -1.08
Rc3h1-201ENSMUST00000035911 Rb1cc1Q9ESK9 1588 aa8.31□□□□□ -1.08
Rc3h1-201ENSMUST00000035911 Ifnlr1Q8CGK5 535 aa8.31□□□□□ -1.08
Rc3h1-201ENSMUST00000035911 Sycp2Q9CUU3 1500 aa8.29□□□□□ -1.08
Rc3h1-201ENSMUST00000035911 SafbD3YXK2 937 aaKnown RBP8.28□□□□□ -1.08
Rc3h1-201ENSMUST00000035911 Rtl5Q5DTT4 599 aa8.28□□□□□ -1.08
Rc3h1-201ENSMUST00000035911 Anp32aO35381 247 aa8.26□□□□□ -1.09
Rc3h1-201ENSMUST00000035911 UbtfP25976 765 aaKnown RBP8.26□□□□□ -1.09
Rc3h1-201ENSMUST00000035911 Hnrnpul2Q00PI9 745 aaKnown RBP8.25□□□□□ -1.09
Rc3h1-201ENSMUST00000035911 Baz1aO88379 1555 aa8.23□□□□□ -1.09
Rc3h1-201ENSMUST00000035911 Crybg2B7ZCC2 1516 aa8.22□□□□□ -1.09
Rc3h1-201ENSMUST00000035911 TonslQ6NZL6 1363 aa8.21□□□□□ -1.1
Rc3h1-201ENSMUST00000035911 Ttbk1Q6PCN3 1308 aa8.19□□□□□ -1.1
Rc3h1-201ENSMUST00000035911 CatipB9EKE5 520 aa8.17□□□□□ -1.1
Rc3h1-201ENSMUST00000035911 Ap3b1Q9Z1T1 1105 aa8.15□□□□□ -1.1
Rc3h1-201ENSMUST00000035911 Stra8P70278 393 aa8.12□□□□□ -1.11
Rc3h1-201ENSMUST00000035911 Hdac5Q9Z2V6 1113 aa8.12□□□□□ -1.11
Rc3h1-201ENSMUST00000035911 BicraF8VPZ9 1578 aa8.08□□□□□ -1.12
Rc3h1-201ENSMUST00000035911 Phf23Q8BSN5 401 aa8.08□□□□□ -1.12
Rc3h1-201ENSMUST00000035911 Nolc1E9Q5C9 702 aaKnown RBP8.06□□□□□ -1.12
Rc3h1-201ENSMUST00000035911 Calr4Q3TQS0 420 aa8.06□□□□□ -1.12
Rc3h1-201ENSMUST00000035911 Supt16hQ920B9 1047 aa8.03□□□□□ -1.12
Rc3h1-201ENSMUST00000035911 Rsf1E9PWW9 1441 aaKnown RBP8.02□□□□□ -1.13
Rc3h1-201ENSMUST00000035911 Smarca2Q6DIC0 1577 aa8.01□□□□□ -1.13
Rc3h1-201ENSMUST00000035911 Upf2A2AT37 1269 aaKnown RBP8□□□□□ -1.13
Rc3h1-201ENSMUST00000035911 Gtf3c3Q3TMP1 882 aa8□□□□□ -1.13
Rc3h1-201ENSMUST00000035911 Pknox2Q8BG99 474 aa7.99□□□□□ -1.13
Rc3h1-201ENSMUST00000035911 Ppp4r2Q0VGB7 417 aa7.99□□□□□ -1.13
Rc3h1-201ENSMUST00000035911 Ccdc9Q8VC31 543 aaKnown RBP7.99□□□□□ -1.13
Rc3h1-201ENSMUST00000035911 Ccdc27Q3V036 639 aa7.98□□□□□ -1.13
Rc3h1-201ENSMUST00000035911 Fgd1P52734 960 aa7.98□□□□□ -1.13
Rc3h1-201ENSMUST00000035911 NrdcQ8BHG1 1161 aa7.97□□□□□ -1.13
Rc3h1-201ENSMUST00000035911 Irx3P81067 507 aa7.97□□□□□ -1.13
Rc3h1-201ENSMUST00000035911 Znf710Q3U288 666 aa7.97□□□□□ -1.13
Rc3h1-201ENSMUST00000035911 Slc24a1Q91WD8 1130 aa7.96□□□□□ -1.14
Rc3h1-201ENSMUST00000035911 Myt1lP97500 1187 aa7.95□□□□□ -1.14
Rc3h1-201ENSMUST00000035911 Wdr43Q6ZQL4 677 aaKnown RBP7.95□□□□□ -1.14
Rc3h1-201ENSMUST00000035911 Thoc2B1AZI6 1594 aaKnown RBP7.95□□□□□ -1.14
Rc3h1-201ENSMUST00000035911 Plcd4Q8K3R3 807 aa7.95□□□□□ -1.14
Rc3h1-201ENSMUST00000035911 Il27Q8K3I6 234 aa7.93□□□□□ -1.14
Rc3h1-201ENSMUST00000035911 4933416C03RikQ3V063 378 aa7.93□□□□□ -1.14
Rc3h1-201ENSMUST00000035911 Eid3Q3V124 375 aa7.93□□□□□ -1.14
Rc3h1-201ENSMUST00000035911 Hsp90aa1P07901 733 aaKnown RBP7.92□□□□□ -1.14
Rc3h1-201ENSMUST00000035911 Dnajc5bQ9CQ94 199 aa7.92□□□□□ -1.14
Rc3h1-201ENSMUST00000035911 Eif5bQ05D44 1216 aaKnown RBP7.91□□□□□ -1.14
Rc3h1-201ENSMUST00000035911 Pds5bQ4VA53 1446 aaKnown RBP7.9□□□□□ -1.15
Rc3h1-201ENSMUST00000035911 Ccdc88bQ4QRL3 1481 aa7.89□□□□□ -1.15
Retrieved 100 of 22,080 RNA–protein pairs in 32.7 ms