RNA–Protein interactions for RNA: ENSMUST00000023352.8

Prkdc-201, Transcript of DNA-dependent protein kinase catalytic subunit, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Prkdc, Length 12,647 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Prkdc-201ENSMUST00000023352 Rpgrip1Q9EPQ2 1331 aa7,94□□□□□ -1,14
Prkdc-201ENSMUST00000023352 NischQ80TM9 1593 aa7,82□□□□□ -1,16
Prkdc-201ENSMUST00000023352 Rtl1Q7M732 1744 aa7,68□□□□□ -1,18
Prkdc-201ENSMUST00000023352 Rhox8Q6VSS7 320 aa7,57□□□□□ -1,2
Prkdc-201ENSMUST00000023352 Gm35339A0A140LHH9 1649 aa7,55□□□□□ -1,2
Prkdc-201ENSMUST00000023352 Abcc9P70170 1546 aa7,55□□□□□ -1,2
Prkdc-201ENSMUST00000023352 Las1lA2BE28 776 aaKnown RBP7,51□□□□□ -1,21
Prkdc-201ENSMUST00000023352 Ccdc180J3QNE4 1664 aa7,45□□□□□ -1,22
Prkdc-201ENSMUST00000023352 Cngb1E1AZ71 1325 aa7,42□□□□□ -1,22
Prkdc-201ENSMUST00000023352 Myt1Q8CFC2 1127 aa7,32□□□□□ -1,24
Prkdc-201ENSMUST00000023352 Abcc8B2RUS7 1588 aa7,29□□□□□ -1,24
Prkdc-201ENSMUST00000023352 Pelp1Q9DBD5 1123 aaKnown RBP7,22□□□□□ -1,25
Prkdc-201ENSMUST00000023352 Dcaf1Q80TR8 1506 aa7,11□□□□□ -1,27
Prkdc-201ENSMUST00000023352 Trim41Q5NCC3 630 aa7,08□□□□□ -1,28
Prkdc-201ENSMUST00000023352 Wdr66E9Q743 1299 aa7,06□□□□□ -1,28
Prkdc-201ENSMUST00000023352 HrcG5E8J6 738 aa7,06□□□□□ -1,28
Prkdc-201ENSMUST00000023352 Acin1Q9JIX8 1338 aaKnown RBP7,03□□□□□ -1,28
Prkdc-201ENSMUST00000023352 CenpbP27790 599 aa6,99□□□□□ -1,29
Prkdc-201ENSMUST00000023352 Rb1cc1Q9ESK9 1588 aa6,87□□□□□ -1,31
Prkdc-201ENSMUST00000023352 NacadQ5SWP3 1504 aa6,85□□□□□ -1,31
Prkdc-201ENSMUST00000023352 Baz1aO88379 1555 aa6,85□□□□□ -1,31
Prkdc-201ENSMUST00000023352 Amer1Q7TS75 1132 aa6,85□□□□□ -1,31
Prkdc-201ENSMUST00000023352 Crybg2B7ZCC2 1516 aa6,84□□□□□ -1,31
Prkdc-201ENSMUST00000023352 NefmP08553 848 aa6,83□□□□□ -1,32
Prkdc-201ENSMUST00000023352 Brd4Q9ESU6 1400 aaKnown RBP6,82□□□□□ -1,32
Prkdc-201ENSMUST00000023352 Rtl5Q5DTT4 599 aa6,82□□□□□ -1,32
Prkdc-201ENSMUST00000023352 Stra8P70278 393 aa6,8□□□□□ -1,32
Prkdc-201ENSMUST00000023352 Cep164Q5DU05 1446 aa6,77□□□□□ -1,33
Prkdc-201ENSMUST00000023352 Zcchc6Q5BLK4 1491 aaKnown RBP6,75□□□□□ -1,33
Prkdc-201ENSMUST00000023352 4930567H17RikQ3V0K5 233 aa6,75□□□□□ -1,33
Prkdc-201ENSMUST00000023352 Ccdc136Q3TVA9 1136 aa6,74□□□□□ -1,33
Prkdc-201ENSMUST00000023352 Pcgf6Q99NA9 353 aa6,72□□□□□ -1,33
Prkdc-201ENSMUST00000023352 DiexfQ8BTT6 772 aaKnown RBP6,72□□□□□ -1,33
Prkdc-201ENSMUST00000023352 Tnnt3Q9QZ47 272 aa6,72□□□□□ -1,33
Prkdc-201ENSMUST00000023352 Esf1Q3V1V3 845 aaKnown RBP6,71□□□□□ -1,34
Prkdc-201ENSMUST00000023352 Kdm5dQ62240 1548 aa6,66□□□□□ -1,34
Prkdc-201ENSMUST00000023352 Ube2uB1AUC4 352 aa6,63□□□□□ -1,35
Prkdc-201ENSMUST00000023352 Cdk11bP24788 784 aaKnown RBP6,61□□□□□ -1,35
Prkdc-201ENSMUST00000023352 Ccdc9Q8VC31 543 aaKnown RBP6,6□□□□□ -1,35
Prkdc-201ENSMUST00000023352 Zeb1Q64318 1117 aa6,6□□□□□ -1,35
Prkdc-201ENSMUST00000023352 Smarca2Q6DIC0 1577 aa6,59□□□□□ -1,35
Prkdc-201ENSMUST00000023352 Neurod1Q60867 357 aa6,58□□□□□ -1,36
Prkdc-201ENSMUST00000023352 Anp32bQ9EST5 272 aaKnown RBP6,56□□□□□ -1,36
Prkdc-201ENSMUST00000023352 Npm2Q80W85 207 aa6,54□□□□□ -1,36
Prkdc-201ENSMUST00000023352 Golga3P55937 1487 aa6,54□□□□□ -1,36
Prkdc-201ENSMUST00000023352 Aplp2Q06335 707 aa6,54□□□□□ -1,36
Prkdc-201ENSMUST00000023352 ScribQ80U72 1612 aa6,53□□□□□ -1,36
Prkdc-201ENSMUST00000023352 Sycp2Q9CUU3 1500 aa6,53□□□□□ -1,36
Prkdc-201ENSMUST00000023352 Ehmt2Q9Z148 1263 aaKnown RBP6,51□□□□□ -1,37
Prkdc-201ENSMUST00000023352 Anks4bQ8K3X6 423 aa6,48□□□□□ -1,37
Prkdc-201ENSMUST00000023352 Nop58Q6DFW4 536 aaKnown RBP6,47□□□□□ -1,37
Prkdc-201ENSMUST00000023352 Cttnbp2B9EJA2 1648 aa6,43□□□□□ -1,38
Prkdc-201ENSMUST00000023352 Anp32aO35381 247 aa6,43□□□□□ -1,38
Prkdc-201ENSMUST00000023352 Fmn1Q05860 1466 aa6,42□□□□□ -1,38
Prkdc-201ENSMUST00000023352 Ccer2J3QPU5 274 aa6,42□□□□□ -1,38
Prkdc-201ENSMUST00000023352 Hdac5Q9Z2V6 1113 aa6,42□□□□□ -1,38
Prkdc-201ENSMUST00000023352 ClspnQ80YR7 1315 aa6,41□□□□□ -1,38
Prkdc-201ENSMUST00000023352 Gab3Q8BSM5 595 aa6,41□□□□□ -1,38
Prkdc-201ENSMUST00000023352 Supt5hO55201 1082 aaKnown RBP6,41□□□□□ -1,38
Prkdc-201ENSMUST00000023352 NeflP08551 543 aa6,4□□□□□ -1,38
Prkdc-201ENSMUST00000023352 Pds5bQ4VA53 1446 aaKnown RBP6,4□□□□□ -1,38
Prkdc-201ENSMUST00000023352 Ccdc18Q640L5 1455 aa6,4□□□□□ -1,38
Prkdc-201ENSMUST00000023352 CftrP26361 1476 aa6,38□□□□□ -1,39
Prkdc-201ENSMUST00000023352 Smarca4Q3TKT4 1613 aaKnown RBP6,38□□□□□ -1,39
Prkdc-201ENSMUST00000023352 Baz1bQ9Z277 1479 aa6,38□□□□□ -1,39
Prkdc-201ENSMUST00000023352 Rsf1E9PWW9 1441 aaKnown RBP6,38□□□□□ -1,39
Prkdc-201ENSMUST00000023352 Ercc6F8VPZ5 1481 aa6,37□□□□□ -1,39
Prkdc-201ENSMUST00000023352 Myt1lP97500 1187 aa6,35□□□□□ -1,39
Prkdc-201ENSMUST00000023352 Eea1Q8BL66 1411 aa6,35□□□□□ -1,39
Prkdc-201ENSMUST00000023352 TonslQ6NZL6 1363 aa6,34□□□□□ -1,39
Prkdc-201ENSMUST00000023352 NrdcQ8BHG1 1161 aa6,33□□□□□ -1,4
Prkdc-201ENSMUST00000023352 Atad2bE9Q166 1460 aaKnown RBP6,32□□□□□ -1,4
Prkdc-201ENSMUST00000023352 Ythdc1E9Q5K9 736 aaKnown RBP6,32□□□□□ -1,4
Prkdc-201ENSMUST00000023352 4933416C03RikQ3V063 378 aa6,32□□□□□ -1,4
Prkdc-201ENSMUST00000023352 NclP09405 707 aaKnown RBP6,3□□□□□ -1,4
Prkdc-201ENSMUST00000023352 Eif5bQ05D44 1216 aaKnown RBP6,29□□□□□ -1,4
Prkdc-201ENSMUST00000023352 Mia2Q91ZV0 1396 aa6,29□□□□□ -1,4
Prkdc-201ENSMUST00000023352 UbtfP25976 765 aaKnown RBP6,28□□□□□ -1,4
Prkdc-201ENSMUST00000023352 Ttbk1Q6PCN3 1308 aa6,28□□□□□ -1,4
Prkdc-201ENSMUST00000023352 Bcl11aQ9QYE3 773 aa6,27□□□□□ -1,41
Prkdc-201ENSMUST00000023352 Clip1Q922J3 1391 aa6,27□□□□□ -1,41
Prkdc-201ENSMUST00000023352 Map3k1P53349 1493 aa6,26□□□□□ -1,41
Prkdc-201ENSMUST00000023352 Synj1Q8CHC4 1574 aa6,25□□□□□ -1,41
Prkdc-201ENSMUST00000023352 Cep162Q6ZQ06 1403 aa6,25□□□□□ -1,41
Prkdc-201ENSMUST00000023352 Npm1Q61937 292 aaKnown RBP6,25□□□□□ -1,41
Prkdc-201ENSMUST00000023352 Top2bQ64511 1612 aa6,25□□□□□ -1,41
Prkdc-201ENSMUST00000023352 Rapgef2Q8CHG7 1496 aa6,23□□□□□ -1,41
Prkdc-201ENSMUST00000023352 Rpap1Q80TE0 1409 aa6,23□□□□□ -1,41
Prkdc-201ENSMUST00000023352 Top2aQ01320 1528 aaKnown RBP6,23□□□□□ -1,41
Prkdc-201ENSMUST00000023352 Mier1Q5UAK0 511 aa6,23□□□□□ -1,41
Prkdc-201ENSMUST00000023352 Polr1aO35134 1717 aaKnown RBP6,23□□□□□ -1,41
Prkdc-201ENSMUST00000023352 Csrnp3P59055 597 aa6,22□□□□□ -1,41
Prkdc-201ENSMUST00000023352 1700123L14RikQ3V2K7 440 aa6,22□□□□□ -1,41
Prkdc-201ENSMUST00000023352 Iqgap2Q3UQ44 1575 aa6,21□□□□□ -1,42
Prkdc-201ENSMUST00000023352 Setd5Q5XJV7 1441 aa6,2□□□□□ -1,42
Prkdc-201ENSMUST00000023352 Chic1Q8CBW7 227 aa6,19□□□□□ -1,42
Prkdc-201ENSMUST00000023352 Upf2A2AT37 1269 aaKnown RBP6,19□□□□□ -1,42
Prkdc-201ENSMUST00000023352 Arid4bA2CG63 1314 aaKnown RBP6,19□□□□□ -1,42
Prkdc-201ENSMUST00000023352 Ccdc27Q3V036 639 aa6,18□□□□□ -1,42
Prkdc-201ENSMUST00000023352 NrkQ9R0G8 1455 aa6,18□□□□□ -1,42
Retrieved 100 of 22,080 RNA–protein pairs in 18,3 ms