RNA–Protein interactions for RNA: ENSMUST00000022220.12

Msh3-201, Transcript of DNA mismatch repair protein Msh3, mousemouse

APPRIS ALT2 TSL 1 (best) BASIC

Gene Msh3, Length 3,937 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Msh3-201ENSMUST00000022220 Rhox8Q6VSS7 320 aa19.93■□□□□ 0.78
Msh3-201ENSMUST00000022220 NischQ80TM9 1593 aa18.93■□□□□ 0.62
Msh3-201ENSMUST00000022220 Ccdc136Q3TVA9 1136 aa18.18■□□□□ 0.5
Msh3-201ENSMUST00000022220 Rpgrip1Q9EPQ2 1331 aa18.08■□□□□ 0.49
Msh3-201ENSMUST00000022220 Abcc9P70170 1546 aa17.86■□□□□ 0.45
Msh3-201ENSMUST00000022220 Ehmt2Q9Z148 1263 aaKnown RBP17.85■□□□□ 0.45
Msh3-201ENSMUST00000022220 Abcc8B2RUS7 1588 aa17.62■□□□□ 0.41
Msh3-201ENSMUST00000022220 Cngb1E1AZ71 1325 aa17.58■□□□□ 0.4
Msh3-201ENSMUST00000022220 Esf1Q3V1V3 845 aaKnown RBP17.54■□□□□ 0.4
Msh3-201ENSMUST00000022220 Gab3Q8BSM5 595 aa17.44■□□□□ 0.38
Msh3-201ENSMUST00000022220 Gm35339A0A140LHH9 1649 aa17.41■□□□□ 0.38
Msh3-201ENSMUST00000022220 Trim41Q5NCC3 630 aa17.4■□□□□ 0.38
Msh3-201ENSMUST00000022220 Acin1Q9JIX8 1338 aaKnown RBP17.38■□□□□ 0.37
Msh3-201ENSMUST00000022220 Pcgf6Q99NA9 353 aa17.19■□□□□ 0.34
Msh3-201ENSMUST00000022220 Zcchc6Q5BLK4 1491 aaKnown RBP17.13■□□□□ 0.33
Msh3-201ENSMUST00000022220 Ccdc180J3QNE4 1664 aa17.01■□□□□ 0.31
Msh3-201ENSMUST00000022220 Myt1lP97500 1187 aa17■□□□□ 0.31
Msh3-201ENSMUST00000022220 Npm2Q80W85 207 aa16.93■□□□□ 0.3
Msh3-201ENSMUST00000022220 Rtl1Q7M732 1744 aa16.89■□□□□ 0.29
Msh3-201ENSMUST00000022220 Zeb1Q64318 1117 aa16.89■□□□□ 0.29
Msh3-201ENSMUST00000022220 Las1lA2BE28 776 aaKnown RBP16.85■□□□□ 0.29
Msh3-201ENSMUST00000022220 Il27Q8K3I6 234 aa16.8■□□□□ 0.28
Msh3-201ENSMUST00000022220 HrcG5E8J6 738 aa16.76■□□□□ 0.27
Msh3-201ENSMUST00000022220 Supt5hO55201 1082 aaKnown RBP16.75■□□□□ 0.27
Msh3-201ENSMUST00000022220 UbtfP25976 765 aaKnown RBP16.6■□□□□ 0.25
Msh3-201ENSMUST00000022220 Rb1cc1Q9ESK9 1588 aa16.58■□□□□ 0.25
Msh3-201ENSMUST00000022220 Neurod1Q60867 357 aa16.55■□□□□ 0.24
Msh3-201ENSMUST00000022220 Wdr66E9Q743 1299 aa16.48■□□□□ 0.23
Msh3-201ENSMUST00000022220 Ube2uB1AUC4 352 aa16.47■□□□□ 0.23
Msh3-201ENSMUST00000022220 Chic1Q8CBW7 227 aa16.43■□□□□ 0.22
Msh3-201ENSMUST00000022220 Ap3b1Q9Z1T1 1105 aa16.39■□□□□ 0.21
Msh3-201ENSMUST00000022220 NacadQ5SWP3 1504 aa16.38■□□□□ 0.21
Msh3-201ENSMUST00000022220 Dcaf1Q80TR8 1506 aa16.37■□□□□ 0.21
Msh3-201ENSMUST00000022220 Kdm5dQ62240 1548 aa16.33■□□□□ 0.2
Msh3-201ENSMUST00000022220 CenpbP27790 599 aa16.25■□□□□ 0.19
Msh3-201ENSMUST00000022220 Baz1aO88379 1555 aa16.2■□□□□ 0.18
Msh3-201ENSMUST00000022220 NefmP08553 848 aa16.2■□□□□ 0.18
Msh3-201ENSMUST00000022220 Brd4Q9ESU6 1400 aaKnown RBP16.19■□□□□ 0.18
Msh3-201ENSMUST00000022220 Csrnp3P59055 597 aa16.13■□□□□ 0.17
Msh3-201ENSMUST00000022220 Ppargc1bQ8VHJ7 1014 aa16.13■□□□□ 0.17
Msh3-201ENSMUST00000022220 ScribQ80U72 1612 aa16.12■□□□□ 0.17
Msh3-201ENSMUST00000022220 1700123L14RikQ3V2K7 440 aa16.1■□□□□ 0.17
Msh3-201ENSMUST00000022220 Myt1Q8CFC2 1127 aa16.1■□□□□ 0.17
Msh3-201ENSMUST00000022220 Npm1Q61937 292 aaKnown RBP16.09■□□□□ 0.17
Msh3-201ENSMUST00000022220 Plekhg3Q4VAC9 1341 aa16.09■□□□□ 0.17
Msh3-201ENSMUST00000022220 Sall2Q9QX96 1004 aa16.07■□□□□ 0.16
Msh3-201ENSMUST00000022220 Fam50aQ9WV03 339 aaKnown RBP16.05■□□□□ 0.16
Msh3-201ENSMUST00000022220 Mier1Q5UAK0 511 aa16.03■□□□□ 0.16
Msh3-201ENSMUST00000022220 Cdk11bP24788 784 aaKnown RBP16.02■□□□□ 0.16
Msh3-201ENSMUST00000022220 Lmod2Q3UHZ5 550 aa16.01■□□□□ 0.15
Msh3-201ENSMUST00000022220 Anks4bQ8K3X6 423 aa16.01■□□□□ 0.15
Msh3-201ENSMUST00000022220 Cep164Q5DU05 1446 aa15.97■□□□□ 0.15
Msh3-201ENSMUST00000022220 Nop58Q6DFW4 536 aaKnown RBP15.95■□□□□ 0.14
Msh3-201ENSMUST00000022220 Ubl4bQ9CQ84 188 aa15.95■□□□□ 0.14
Msh3-201ENSMUST00000022220 Gm38655A0A286YDK6 273 aa15.92■□□□□ 0.14
Msh3-201ENSMUST00000022220 DiexfQ8BTT6 772 aaKnown RBP15.87■□□□□ 0.13
Msh3-201ENSMUST00000022220 Rsf1E9PWW9 1441 aaKnown RBP15.84■□□□□ 0.13
Msh3-201ENSMUST00000022220 Sycp2Q9CUU3 1500 aa15.84■□□□□ 0.13
Msh3-201ENSMUST00000022220 Cecr2E9Q2Z1 1453 aa15.81■□□□□ 0.12
Msh3-201ENSMUST00000022220 Aplp2Q06335 707 aa15.8■□□□□ 0.12
Msh3-201ENSMUST00000022220 Golga3P55937 1487 aa15.8■□□□□ 0.12
Msh3-201ENSMUST00000022220 Eid3Q3V124 375 aa15.77■□□□□ 0.11
Msh3-201ENSMUST00000022220 Clip1Q922J3 1391 aa15.75■□□□□ 0.11
Msh3-201ENSMUST00000022220 Slc24a1Q91WD8 1130 aa15.73■□□□□ 0.11
Msh3-201ENSMUST00000022220 Ccdc88bQ4QRL3 1481 aa15.72■□□□□ 0.11
Msh3-201ENSMUST00000022220 Zbtb7cQ8VCZ7 619 aa15.7■□□□□ 0.1
Msh3-201ENSMUST00000022220 Kif15Q6P9L6 1387 aa15.7■□□□□ 0.1
Msh3-201ENSMUST00000022220 Fkbp15Q6P9Q6 1216 aaKnown RBP15.69■□□□□ 0.1
Msh3-201ENSMUST00000022220 Ifnlr1Q8CGK5 535 aa15.67■□□□□ 0.1
Msh3-201ENSMUST00000022220 NclP09405 707 aaKnown RBP15.66■□□□□ 0.1
Msh3-201ENSMUST00000022220 TonslQ6NZL6 1363 aa15.63■□□□□ 0.09
Msh3-201ENSMUST00000022220 ClspnQ80YR7 1315 aa15.63■□□□□ 0.09
Msh3-201ENSMUST00000022220 Aebp2Q9Z248 504 aaKnown RBP15.61■□□□□ 0.09
Msh3-201ENSMUST00000022220 Mapk8ip2Q9ERE9 830 aa15.59■□□□□ 0.09
Msh3-201ENSMUST00000022220 Smarca2Q6DIC0 1577 aa15.55■□□□□ 0.08
Msh3-201ENSMUST00000022220 CftrP26361 1476 aa15.53■□□□□ 0.08
Msh3-201ENSMUST00000022220 Crybg2B7ZCC2 1516 aa15.52■□□□□ 0.08
Msh3-201ENSMUST00000022220 Pelp1Q9DBD5 1123 aaKnown RBP15.49■□□□□ 0.07
Msh3-201ENSMUST00000022220 Bcl11aQ9QYE3 773 aa15.48■□□□□ 0.07
Msh3-201ENSMUST00000022220 Chic2Q9D9G3 165 aa15.47■□□□□ 0.07
Msh3-201ENSMUST00000022220 Setd5Q5XJV7 1441 aa15.47■□□□□ 0.07
Msh3-201ENSMUST00000022220 Synj1Q8CHC4 1574 aa15.46■□□□□ 0.07
Msh3-201ENSMUST00000022220 Ercc6F8VPZ5 1481 aa15.46■□□□□ 0.07
Msh3-201ENSMUST00000022220 Tnnt3Q9QZ47 272 aa15.45■□□□□ 0.06
Msh3-201ENSMUST00000022220 BlmO88700 1416 aa15.45■□□□□ 0.06
Msh3-201ENSMUST00000022220 Pds5bQ4VA53 1446 aaKnown RBP15.45■□□□□ 0.06
Msh3-201ENSMUST00000022220 Fam71e1A1L3C1 212 aa15.44■□□□□ 0.06
Msh3-201ENSMUST00000022220 Hnrnpul2Q00PI9 745 aaKnown RBP15.42■□□□□ 0.06
Msh3-201ENSMUST00000022220 Zbtb4Q5F293 982 aa15.41■□□□□ 0.06
Msh3-201ENSMUST00000022220 Ttbk1Q6PCN3 1308 aa15.32■□□□□ 0.04
Msh3-201ENSMUST00000022220 Ccdc18Q640L5 1455 aa15.31■□□□□ 0.04
Msh3-201ENSMUST00000022220 SafbD3YXK2 937 aaKnown RBP15.31■□□□□ 0.04
Msh3-201ENSMUST00000022220 Os9Q8K2C7 672 aa15.31■□□□□ 0.04
Msh3-201ENSMUST00000022220 Atad2bE9Q166 1460 aaKnown RBP15.28■□□□□ 0.04
Msh3-201ENSMUST00000022220 Fmn1Q05860 1466 aa15.28■□□□□ 0.04
Msh3-201ENSMUST00000022220 Cep162Q6ZQ06 1403 aa15.27■□□□□ 0.04
Msh3-201ENSMUST00000022220 Anp32aO35381 247 aa15.25■□□□□ 0.03
Msh3-201ENSMUST00000022220 Stra8P70278 393 aa15.25■□□□□ 0.03
Msh3-201ENSMUST00000022220 Smarca4Q3TKT4 1613 aaKnown RBP15.24■□□□□ 0.03
Msh3-201ENSMUST00000022220 Eea1Q8BL66 1411 aa15.24■□□□□ 0.03
Retrieved 100 of 22,080 RNA–protein pairs in 12.8 ms