RNA–Protein interactions for RNA: ENSMUST00000000619.7

Clcn4-201, Transcript of H(+)/Cl(-) exchange transporter 4, mousemouse

APPRIS P3 TSL 1 (best) BASIC

Gene Clcn4, Length 4,607 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Clcn4-201ENSMUST00000000619 Rhox8Q6VSS7 320 aa20.2■□□□□ 0.82
Clcn4-201ENSMUST00000000619 NischQ80TM9 1593 aa19.9■□□□□ 0.78
Clcn4-201ENSMUST00000000619 Abcc9P70170 1546 aa19.01■□□□□ 0.63
Clcn4-201ENSMUST00000000619 Abcc8B2RUS7 1588 aa18.58■□□□□ 0.57
Clcn4-201ENSMUST00000000619 Gm35339A0A140LHH9 1649 aa18.55■□□□□ 0.56
Clcn4-201ENSMUST00000000619 Ccdc136Q3TVA9 1136 aa18.45■□□□□ 0.54
Clcn4-201ENSMUST00000000619 Rpgrip1Q9EPQ2 1331 aa18.43■□□□□ 0.54
Clcn4-201ENSMUST00000000619 Ehmt2Q9Z148 1263 aaKnown RBP18.38■□□□□ 0.53
Clcn4-201ENSMUST00000000619 Rtl1Q7M732 1744 aa18.32■□□□□ 0.52
Clcn4-201ENSMUST00000000619 Ccdc180J3QNE4 1664 aa18.3■□□□□ 0.52
Clcn4-201ENSMUST00000000619 Trim41Q5NCC3 630 aa17.97■□□□□ 0.47
Clcn4-201ENSMUST00000000619 HrcG5E8J6 738 aa17.84■□□□□ 0.45
Clcn4-201ENSMUST00000000619 Acin1Q9JIX8 1338 aaKnown RBP17.84■□□□□ 0.45
Clcn4-201ENSMUST00000000619 Cngb1E1AZ71 1325 aa17.82■□□□□ 0.44
Clcn4-201ENSMUST00000000619 Gab3Q8BSM5 595 aa17.71■□□□□ 0.43
Clcn4-201ENSMUST00000000619 Esf1Q3V1V3 845 aaKnown RBP17.62■□□□□ 0.41
Clcn4-201ENSMUST00000000619 Zcchc6Q5BLK4 1491 aaKnown RBP17.59■□□□□ 0.41
Clcn4-201ENSMUST00000000619 Rb1cc1Q9ESK9 1588 aa17.47■□□□□ 0.39
Clcn4-201ENSMUST00000000619 Zeb1Q64318 1117 aa17.36■□□□□ 0.37
Clcn4-201ENSMUST00000000619 Dcaf1Q80TR8 1506 aa17.36■□□□□ 0.37
Clcn4-201ENSMUST00000000619 Pcgf6Q99NA9 353 aa17.23■□□□□ 0.35
Clcn4-201ENSMUST00000000619 Myt1lP97500 1187 aa17.17■□□□□ 0.34
Clcn4-201ENSMUST00000000619 Baz1aO88379 1555 aa17.17■□□□□ 0.34
Clcn4-201ENSMUST00000000619 Npm2Q80W85 207 aa17.12■□□□□ 0.33
Clcn4-201ENSMUST00000000619 Wdr66E9Q743 1299 aa17.11■□□□□ 0.33
Clcn4-201ENSMUST00000000619 NefmP08553 848 aa17.09■□□□□ 0.33
Clcn4-201ENSMUST00000000619 NacadQ5SWP3 1504 aa17.09■□□□□ 0.33
Clcn4-201ENSMUST00000000619 Las1lA2BE28 776 aaKnown RBP17.09■□□□□ 0.33
Clcn4-201ENSMUST00000000619 Kdm5dQ62240 1548 aa17.08■□□□□ 0.32
Clcn4-201ENSMUST00000000619 UbtfP25976 765 aaKnown RBP17.06■□□□□ 0.32
Clcn4-201ENSMUST00000000619 Cep164Q5DU05 1446 aa17.05■□□□□ 0.32
Clcn4-201ENSMUST00000000619 Chic1Q8CBW7 227 aa17.01■□□□□ 0.31
Clcn4-201ENSMUST00000000619 Supt5hO55201 1082 aaKnown RBP16.98■□□□□ 0.31
Clcn4-201ENSMUST00000000619 ScribQ80U72 1612 aa16.95■□□□□ 0.3
Clcn4-201ENSMUST00000000619 Brd4Q9ESU6 1400 aaKnown RBP16.93■□□□□ 0.3
Clcn4-201ENSMUST00000000619 Mier1Q5UAK0 511 aa16.87■□□□□ 0.29
Clcn4-201ENSMUST00000000619 Il27Q8K3I6 234 aa16.72■□□□□ 0.27
Clcn4-201ENSMUST00000000619 Rsf1E9PWW9 1441 aaKnown RBP16.68■□□□□ 0.26
Clcn4-201ENSMUST00000000619 Golga3P55937 1487 aa16.64■□□□□ 0.25
Clcn4-201ENSMUST00000000619 Crybg2B7ZCC2 1516 aa16.59■□□□□ 0.25
Clcn4-201ENSMUST00000000619 Smarca2Q6DIC0 1577 aa16.59■□□□□ 0.25
Clcn4-201ENSMUST00000000619 Ppargc1bQ8VHJ7 1014 aa16.57■□□□□ 0.24
Clcn4-201ENSMUST00000000619 Ap3b1Q9Z1T1 1105 aa16.56■□□□□ 0.24
Clcn4-201ENSMUST00000000619 Sycp2Q9CUU3 1500 aa16.55■□□□□ 0.24
Clcn4-201ENSMUST00000000619 Ube2uB1AUC4 352 aa16.54■□□□□ 0.24
Clcn4-201ENSMUST00000000619 Ccdc88bQ4QRL3 1481 aa16.52■□□□□ 0.23
Clcn4-201ENSMUST00000000619 Plekhg3Q4VAC9 1341 aa16.51■□□□□ 0.23
Clcn4-201ENSMUST00000000619 Cdk11bP24788 784 aaKnown RBP16.48■□□□□ 0.23
Clcn4-201ENSMUST00000000619 Sall2Q9QX96 1004 aa16.48■□□□□ 0.23
Clcn4-201ENSMUST00000000619 TonslQ6NZL6 1363 aa16.46■□□□□ 0.23
Clcn4-201ENSMUST00000000619 Neurod1Q60867 357 aa16.45■□□□□ 0.22
Clcn4-201ENSMUST00000000619 Cecr2E9Q2Z1 1453 aa16.44■□□□□ 0.22
Clcn4-201ENSMUST00000000619 Nop58Q6DFW4 536 aaKnown RBP16.43■□□□□ 0.22
Clcn4-201ENSMUST00000000619 Clip1Q922J3 1391 aa16.37■□□□□ 0.21
Clcn4-201ENSMUST00000000619 Fam50aQ9WV03 339 aaKnown RBP16.34■□□□□ 0.21
Clcn4-201ENSMUST00000000619 ClspnQ80YR7 1315 aa16.31■□□□□ 0.2
Clcn4-201ENSMUST00000000619 Synj1Q8CHC4 1574 aa16.28■□□□□ 0.2
Clcn4-201ENSMUST00000000619 CftrP26361 1476 aa16.28■□□□□ 0.2
Clcn4-201ENSMUST00000000619 CenpbP27790 599 aa16.22■□□□□ 0.19
Clcn4-201ENSMUST00000000619 Eid3Q3V124 375 aa16.22■□□□□ 0.19
Clcn4-201ENSMUST00000000619 Lmod2Q3UHZ5 550 aa16.19■□□□□ 0.18
Clcn4-201ENSMUST00000000619 NclP09405 707 aaKnown RBP16.19■□□□□ 0.18
Clcn4-201ENSMUST00000000619 Aebp2Q9Z248 504 aaKnown RBP16.18■□□□□ 0.18
Clcn4-201ENSMUST00000000619 Npm1Q61937 292 aaKnown RBP16.14■□□□□ 0.17
Clcn4-201ENSMUST00000000619 Fmn1Q05860 1466 aa16.11■□□□□ 0.17
Clcn4-201ENSMUST00000000619 Anks4bQ8K3X6 423 aa16.11■□□□□ 0.17
Clcn4-201ENSMUST00000000619 Stra8P70278 393 aa16.09■□□□□ 0.17
Clcn4-201ENSMUST00000000619 Slc24a1Q91WD8 1130 aa16.09■□□□□ 0.17
Clcn4-201ENSMUST00000000619 Cep162Q6ZQ06 1403 aa16.09■□□□□ 0.17
Clcn4-201ENSMUST00000000619 Csrnp3P59055 597 aa16.04■□□□□ 0.16
Clcn4-201ENSMUST00000000619 Setd5Q5XJV7 1441 aa16.03■□□□□ 0.16
Clcn4-201ENSMUST00000000619 Mapk8ip2Q9ERE9 830 aa16.01■□□□□ 0.15
Clcn4-201ENSMUST00000000619 Kif15Q6P9L6 1387 aa16.01■□□□□ 0.15
Clcn4-201ENSMUST00000000619 Cttnbp2B9EJA2 1648 aa16■□□□□ 0.15
Clcn4-201ENSMUST00000000619 Smarca4Q3TKT4 1613 aaKnown RBP15.97■□□□□ 0.15
Clcn4-201ENSMUST00000000619 Tnnt3Q9QZ47 272 aa15.97■□□□□ 0.15
Clcn4-201ENSMUST00000000619 Rapgef2Q8CHG7 1496 aa15.97■□□□□ 0.15
Clcn4-201ENSMUST00000000619 BlmO88700 1416 aa15.96■□□□□ 0.15
Clcn4-201ENSMUST00000000619 Eea1Q8BL66 1411 aa15.96■□□□□ 0.15
Clcn4-201ENSMUST00000000619 Ubl4bQ9CQ84 188 aa15.93■□□□□ 0.14
Clcn4-201ENSMUST00000000619 Pelp1Q9DBD5 1123 aaKnown RBP15.91■□□□□ 0.14
Clcn4-201ENSMUST00000000619 Gm38655A0A286YDK6 273 aa15.88■□□□□ 0.13
Clcn4-201ENSMUST00000000619 BicraF8VPZ9 1578 aa15.87■□□□□ 0.13
Clcn4-201ENSMUST00000000619 Pds5bQ4VA53 1446 aaKnown RBP15.87■□□□□ 0.13
Clcn4-201ENSMUST00000000619 Cc2d2aQ8CFW7 1633 aa15.86■□□□□ 0.13
Clcn4-201ENSMUST00000000619 Ercc6F8VPZ5 1481 aa15.81■□□□□ 0.12
Clcn4-201ENSMUST00000000619 Ccdc18Q640L5 1455 aa15.81■□□□□ 0.12
Clcn4-201ENSMUST00000000619 Atad2bE9Q166 1460 aaKnown RBP15.8■□□□□ 0.12
Clcn4-201ENSMUST00000000619 1700123L14RikQ3V2K7 440 aa15.79■□□□□ 0.12
Clcn4-201ENSMUST00000000619 Ccer2J3QPU5 274 aa15.77■□□□□ 0.11
Clcn4-201ENSMUST00000000619 Iqgap2Q3UQ44 1575 aa15.77■□□□□ 0.11
Clcn4-201ENSMUST00000000619 Top2bQ64511 1612 aa15.76■□□□□ 0.11
Clcn4-201ENSMUST00000000619 Top2aQ01320 1528 aaKnown RBP15.76■□□□□ 0.11
Clcn4-201ENSMUST00000000619 Aplp2Q06335 707 aa15.76■□□□□ 0.11
Clcn4-201ENSMUST00000000619 Chic2Q9D9G3 165 aa15.75■□□□□ 0.11
Clcn4-201ENSMUST00000000619 Eif5bQ05D44 1216 aaKnown RBP15.75■□□□□ 0.11
Clcn4-201ENSMUST00000000619 NrdcQ8BHG1 1161 aa15.75■□□□□ 0.11
Clcn4-201ENSMUST00000000619 Myt1Q8CFC2 1127 aa15.63■□□□□ 0.09
Clcn4-201ENSMUST00000000619 Baz1bQ9Z277 1479 aa15.61■□□□□ 0.09
Clcn4-201ENSMUST00000000619 Zbtb7cQ8VCZ7 619 aa15.58■□□□□ 0.08
Retrieved 100 of 22,080 RNA–protein pairs in 10.6 ms