RNA–Protein interactions for RNA: YNR004W

SWM2, Transcript of Protein with a role in snRNA and snoRNA cap trimethylation, yeast

Gene SWM2, Length 441 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SWM2	YNR004W	TRM2	P33753	639 aa		4.79	□□□□□ -1.64
SWM2	YNR004W	MTR4	P47047	1073 aa	Known RBP	4.79	□□□□□ -1.64
SWM2	YNR004W	MON1	P53129	644 aa		4.79	□□□□□ -1.64
SWM2	YNR004W	ENV11	P53246	860 aa		4.79	□□□□□ -1.64
SWM2	YNR004W	SGD1	Q06132	899 aa		4.79	□□□□□ -1.64
SWM2	YNR004W	PUS9	Q12069	462 aa		4.79	□□□□□ -1.64
SWM2	YNR004W	RVS167	P39743	482 aa	Known RBP	4.78	□□□□□ -1.64
SWM2	YNR004W	CDC55	Q00362	526 aa		4.78	□□□□□ -1.64
SWM2	YNR004W	GCN5	Q03330	439 aa		4.78	□□□□□ -1.64
SWM2	YNR004W	KAR5	Q04746	504 aa		4.78	□□□□□ -1.64
SWM2	YNR004W	INP54	Q08227	384 aa	Known RBP	4.78	□□□□□ -1.64
SWM2	YNR004W	NBA1	Q08229	501 aa	Known RBP	4.78	□□□□□ -1.64
SWM2	YNR004W	ATG14	P38270	344 aa		4.77	□□□□□ -1.65
SWM2	YNR004W	LAM1	P38851	1228 aa		4.77	□□□□□ -1.65
SWM2	YNR004W	YJL045W	P47052	634 aa		4.77	□□□□□ -1.65
SWM2	YNR004W	MSE1	P48525	536 aa		4.77	□□□□□ -1.65
SWM2	YNR004W	LAP2	Q10740	671 aa		4.77	□□□□□ -1.65
SWM2	YNR004W	TRS120	Q04183	1289 aa		4.76	□□□□□ -1.65
SWM2	YNR004W	MEF2	P39677	819 aa		4.75	□□□□□ -1.65
SWM2	YNR004W	RSC58	Q07979	502 aa		4.75	□□□□□ -1.65
SWM2	YNR004W	PUF4	P25339	888 aa	Known RBP RIP-Chip data	4.74	□□□□□ -1.65	not detected
SWM2	YNR004W	ATG1	P53104	897 aa		4.74	□□□□□ -1.65
SWM2	YNR004W	XKS1	P42826	600 aa		4.73	□□□□□ -1.65
SWM2	YNR004W	YNR063W	P53749	607 aa		4.73	□□□□□ -1.65
SWM2	YNR004W	UTP5	Q04177	643 aa	Known RBP	4.73	□□□□□ -1.65
SWM2	YNR004W	MNL2	Q12205	849 aa		4.73	□□□□□ -1.65
SWM2	YNR004W	CYC1	P00044	109 aa	Predicted RBP	4.72	□□□□□ -1.65
SWM2	YNR004W	SLI1	P53304	468 aa		4.72	□□□□□ -1.65
SWM2	YNR004W	YML122C	Q03207	126 aa		4.72	□□□□□ -1.65
SWM2	YNR004W	TAF7	Q05021	590 aa		4.72	□□□□□ -1.65
SWM2	YNR004W	HCM1	P25364	564 aa		4.71	□□□□□ -1.66
SWM2	YNR004W	YSC84	P32793	468 aa		4.71	□□□□□ -1.66
SWM2	YNR004W	ACF4	P47129	309 aa		4.71	□□□□□ -1.66
SWM2	YNR004W	HNT2	P49775	206 aa		4.71	□□□□□ -1.66
SWM2	YNR004W	ROT1	Q03691	256 aa		4.71	□□□□□ -1.66
SWM2	YNR004W	COQ4	O13525	335 aa		4.7	□□□□□ -1.66
SWM2	YNR004W	QNS1	P38795	714 aa	Known RBP	4.7	□□□□□ -1.66
SWM2	YNR004W	SUN4	P53616	420 aa		4.7	□□□□□ -1.66
SWM2	YNR004W	NOG1	Q02892	647 aa	Known RBP	4.7	□□□□□ -1.66
SWM2	YNR004W	MSH3	P25336	1018 aa		4.69	□□□□□ -1.66
SWM2	YNR004W	DOM34	P33309	386 aa		4.69	□□□□□ -1.66
SWM2	YNR004W	CCZ1	P38273	704 aa		4.69	□□□□□ -1.66
SWM2	YNR004W	NOC3	Q07896	663 aa	Predicted RBP	4.69	□□□□□ -1.66
SWM2	YNR004W	AIM21	P40563	679 aa		4.68	□□□□□ -1.66
SWM2	YNR004W	PEX13	P80667	386 aa		4.68	□□□□□ -1.66
SWM2	YNR004W	TMA10	Q06177	86 aa		4.68	□□□□□ -1.66
SWM2	YNR004W	URN1	Q06525	465 aa	Known RBP	4.68	□□□□□ -1.66
SWM2	YNR004W	SEC26	P41810	973 aa	Known RBP	4.67	□□□□□ -1.66
SWM2	YNR004W	VPS53	P47061	822 aa		4.67	□□□□□ -1.66
SWM2	YNR004W	MCM6	P53091	1017 aa	Known RBP	4.67	□□□□□ -1.66
SWM2	YNR004W	SCP160	P06105	1222 aa	Known RBP RIP-Chip data	4.66	□□□□□ -1.66	not detected
SWM2	YNR004W	VMA4	P22203	233 aa	Known RBP	4.66	□□□□□ -1.66
SWM2	YNR004W	PMI40	P29952	429 aa	Known RBP	4.66	□□□□□ -1.66
SWM2	YNR004W	MNN10	P50108	393 aa	Known RBP	4.66	□□□□□ -1.66
SWM2	YNR004W	DUS4	Q06063	367 aa		4.66	□□□□□ -1.66
SWM2	YNR004W	RCL1	Q08096	367 aa	Predicted RBP	4.66	□□□□□ -1.66
SWM2	YNR004W	RSB1	Q08417	382 aa		4.66	□□□□□ -1.66
SWM2	YNR004W	RAD53	P22216	821 aa		4.65	□□□□□ -1.67
SWM2	YNR004W	STE11	P23561	717 aa		4.65	□□□□□ -1.67
SWM2	YNR004W	CTF4	Q01454	927 aa		4.65	□□□□□ -1.67
SWM2	YNR004W	PLB2	Q03674	706 aa		4.65	□□□□□ -1.67
SWM2	YNR004W	YCS4	Q06156	1176 aa		4.65	□□□□□ -1.67
SWM2	YNR004W	NTO1	Q12311	748 aa		4.65	□□□□□ -1.67
SWM2	YNR004W	LST4	P34239	828 aa		4.64	□□□□□ -1.67
SWM2	YNR004W	RSM26	P47141	266 aa		4.64	□□□□□ -1.67
SWM2	YNR004W	RXT3	Q07458	294 aa		4.64	□□□□□ -1.67
SWM2	YNR004W	CDC20	P26309	610 aa		4.63	□□□□□ -1.67
SWM2	YNR004W	SAM37	P50110	327 aa		4.63	□□□□□ -1.67
SWM2	YNR004W	RPL34A	P87262	121 aa	Predicted RBP	4.63	□□□□□ -1.67
SWM2	YNR004W	RKM2	Q03942	479 aa		4.63	□□□□□ -1.67
SWM2	YNR004W	ACK1	Q07622	623 aa	Predicted RBP	4.63	□□□□□ -1.67
SWM2	YNR004W	GAL10	P04397	699 aa		4.62	□□□□□ -1.67
SWM2	YNR004W	SQT1	P35184	431 aa		4.62	□□□□□ -1.67
SWM2	YNR004W	CIC1	P38779	376 aa	Known RBP	4.62	□□□□□ -1.67
SWM2	YNR004W	TNA1	P53322	534 aa		4.62	□□□□□ -1.67
SWM2	YNR004W	CMP2	P14747	604 aa		4.61	□□□□□ -1.67
SWM2	YNR004W	GPB2	P39717	880 aa		4.61	□□□□□ -1.67
SWM2	YNR004W	RSM24	Q03976	319 aa		4.61	□□□□□ -1.67
SWM2	YNR004W	SUB2	Q07478	446 aa	Known RBP	4.61	□□□□□ -1.67
SWM2	YNR004W	GPB1	Q08886	897 aa		4.61	□□□□□ -1.67
SWM2	YNR004W	KIP1	P28742	1111 aa		4.6	□□□□□ -1.67
SWM2	YNR004W	ADD66	P36040	267 aa		4.6	□□□□□ -1.67
SWM2	YNR004W	BAP2	P38084	609 aa		4.6	□□□□□ -1.67
SWM2	YNR004W	CHS7	P38843	316 aa		4.6	□□□□□ -1.67
SWM2	YNR004W	PHO23	P50947	330 aa		4.6	□□□□□ -1.67
SWM2	YNR004W	HOS3	Q02959	697 aa	Known RBP	4.6	□□□□□ -1.67
SWM2	YNR004W	SPO21	Q12411	609 aa		4.6	□□□□□ -1.67
SWM2	YNR004W	GRS1	P38088	690 aa	Known RBP	4.59	□□□□□ -1.67
SWM2	YNR004W	PIK1	P39104	1066 aa		4.59	□□□□□ -1.67
SWM2	YNR004W	GPI13	Q07830	1017 aa		4.59	□□□□□ -1.67
SWM2	YNR004W	UGA4	P32837	571 aa		4.58	□□□□□ -1.68
SWM2	YNR004W	PBP1	P53297	722 aa	Known RBP	4.58	□□□□□ -1.68
SWM2	YNR004W	PRP40	P33203	583 aa	Known RBP	4.57	□□□□□ -1.68
SWM2	YNR004W	RFC5	P38251	354 aa		4.57	□□□□□ -1.68
SWM2	YNR004W	PEX28	P38848	579 aa		4.57	□□□□□ -1.68
SWM2	YNR004W	FRT1	Q99332	602 aa		4.57	□□□□□ -1.68
SWM2	YNR004W	CDC6	P09119	513 aa		4.56	□□□□□ -1.68
SWM2	YNR004W	SRM1	P21827	482 aa		4.56	□□□□□ -1.68
SWM2	YNR004W	KIN4	Q01919	800 aa		4.56	□□□□□ -1.68
SWM2	YNR004W	YAP6	Q03935	383 aa		4.56	□□□□□ -1.68

Retrieved 100 of 5,963 RNA–protein pairs in 62.9 ms