RNA–Protein interactions for RNA: YBL024W

NCL1, Transcript of S-adenosyl-L-methionine-dependent tRNA: m5C-methyltransferase, yeast

Gene NCL1, Length 2,055 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NCL1	YBL024W	BRE4	Q07660	1125 aa		3.23	□□□□□ -1.89
NCL1	YBL024W	MCD1	Q12158	566 aa		3.23	□□□□□ -1.89
NCL1	YBL024W	TY1A-LR4	P0C2I8	440 aa	Known RBP	3.23	□□□□□ -1.89
NCL1	YBL024W	RPS4A	P0CX35	261 aa	Known RBP	3.23	□□□□□ -1.89
NCL1	YBL024W	RPS4B	P0CX36	261 aa	Known RBP	3.23	□□□□□ -1.89
NCL1	YBL024W	TY1A-DR6	P0CX70	440 aa		3.23	□□□□□ -1.89
NCL1	YBL024W	TY1A-ER1	P0CX71	440 aa		3.23	□□□□□ -1.89
NCL1	YBL024W	TY1A-LR2	P0CX72	440 aa		3.23	□□□□□ -1.89
NCL1	YBL024W	TY1A-PL	P0CX73	440 aa		3.23	□□□□□ -1.89
NCL1	YBL024W	TY1A-JR1	P0CX74	440 aa		3.23	□□□□□ -1.89
NCL1	YBL024W	TY1A-LR3	P0CX75	440 aa		3.23	□□□□□ -1.89
NCL1	YBL024W	TY1A-ML2	P0CX76	440 aa		3.23	□□□□□ -1.89
NCL1	YBL024W	IOC3	P43596	787 aa		3.23	□□□□□ -1.89
NCL1	YBL024W	CWC24	P53769	259 aa		3.23	□□□□□ -1.89
NCL1	YBL024W	ELA1	P53861	379 aa	Predicted RBP	3.23	□□□□□ -1.89
NCL1	YBL024W	TY1A-GR1	Q12085	440 aa		3.23	□□□□□ -1.89
NCL1	YBL024W	TY1A-PR3	Q6Q5H1	440 aa	Known RBP	3.23	□□□□□ -1.89
NCL1	YBL024W	TY1A-OL	Q92392	440 aa	Known RBP	3.23	□□□□□ -1.89
NCL1	YBL024W	MSH4	P40965	878 aa	Predicted RBP	3.22	□□□□□ -1.89
NCL1	YBL024W	RCM1	P53972	490 aa		3.22	□□□□□ -1.89
NCL1	YBL024W	PEX13	P80667	386 aa		3.22	□□□□□ -1.89
NCL1	YBL024W	ADI1	Q03677	179 aa		3.22	□□□□□ -1.89
NCL1	YBL024W	WRS1	Q12109	432 aa	Known RBP	3.22	□□□□□ -1.89
NCL1	YBL024W	CDC34	P14682	295 aa		3.21	□□□□□ -1.89
NCL1	YBL024W	NFS1	P25374	497 aa		3.21	□□□□□ -1.89
NCL1	YBL024W	DUT1	P33317	147 aa		3.21	□□□□□ -1.89
NCL1	YBL024W	NNK1	P36003	928 aa		3.21	□□□□□ -1.89
NCL1	YBL024W	EXO5	P38289	585 aa		3.21	□□□□□ -1.89
NCL1	YBL024W	HSE1	P38753	452 aa		3.21	□□□□□ -1.89
NCL1	YBL024W	FAA4	P47912	694 aa	Known RBP	3.21	□□□□□ -1.89
NCL1	YBL024W	YGR045C	P53229	120 aa		3.21	□□□□□ -1.89
NCL1	YBL024W	GDE1	Q02979	1223 aa		3.21	□□□□□ -1.89
NCL1	YBL024W	FPR4	Q06205	392 aa	Predicted RBP	3.21	□□□□□ -1.89
NCL1	YBL024W	SMY2	P32909	740 aa	Known RBP	3.21	□□□□□ -1.9
NCL1	YBL024W	YAR028W	P39548	234 aa		3.21	□□□□□ -1.9
NCL1	YBL024W	SLS1	P42900	643 aa		3.21	□□□□□ -1.9
NCL1	YBL024W	NOG1	Q02892	647 aa	Known RBP	3.21	□□□□□ -1.9
NCL1	YBL024W	GCR1	P07261	785 aa		3.2	□□□□□ -1.9
NCL1	YBL024W	MSH3	P25336	1018 aa		3.2	□□□□□ -1.9
NCL1	YBL024W	NEM1	P38757	446 aa		3.2	□□□□□ -1.9
NCL1	YBL024W	TAT2	P38967	592 aa		3.2	□□□□□ -1.9
NCL1	YBL024W	SDH1	Q00711	640 aa		3.2	□□□□□ -1.9
NCL1	YBL024W	LAP2	Q10740	671 aa		3.2	□□□□□ -1.9
NCL1	YBL024W	PRI2	P20457	528 aa		3.2	□□□□□ -1.9
NCL1	YBL024W	SRP40	P32583	406 aa	Predicted RBP	3.2	□□□□□ -1.9
NCL1	YBL024W	CTH1	P47976	325 aa		3.2	□□□□□ -1.9
NCL1	YBL024W	ALT1	P52893	592 aa		3.2	□□□□□ -1.9
NCL1	YBL024W	YGR053C	P53234	283 aa		3.2	□□□□□ -1.9
NCL1	YBL024W	SCP160	P06105	1222 aa	Known RBP RIP-Chip data	3.19	□□□□□ -1.9	RIP-Chip
NCL1	YBL024W	GCD1	P09032	578 aa	Predicted RBP	3.19	□□□□□ -1.9
NCL1	YBL024W	VMA4	P22203	233 aa	Known RBP	3.19	□□□□□ -1.9
NCL1	YBL024W	GRX1	P25373	110 aa	Known RBP	3.19	□□□□□ -1.9
NCL1	YBL024W	PEX28	P38848	579 aa		3.19	□□□□□ -1.9
NCL1	YBL024W	NSE3	Q05541	303 aa		3.19	□□□□□ -1.9
NCL1	YBL024W	YKL091C	P33324	310 aa	Known RBP	3.18	□□□□□ -1.9
NCL1	YBL024W	YKL069W	P36088	180 aa		3.18	□□□□□ -1.9
NCL1	YBL024W	BRN1	P38170	754 aa		3.18	□□□□□ -1.9
NCL1	YBL024W	XKS1	P42826	600 aa		3.18	□□□□□ -1.9
NCL1	YBL024W	YJL049W	P47048	450 aa		3.18	□□□□□ -1.9
NCL1	YBL024W	GNP1	P48813	663 aa		3.18	□□□□□ -1.9
NCL1	YBL024W	RNH70	P53331	553 aa		3.18	□□□□□ -1.9
NCL1	YBL024W	TPP1	Q03796	238 aa		3.18	□□□□□ -1.9
NCL1	YBL024W	UTP5	Q04177	643 aa	Known RBP	3.18	□□□□□ -1.9
NCL1	YBL024W	OPI10	Q08202	246 aa		3.18	□□□□□ -1.9
NCL1	YBL024W	HRK1	Q08732	759 aa	Known RBP	3.18	□□□□□ -1.9
NCL1	YBL024W	RTT10	Q08924	1013 aa		3.18	□□□□□ -1.9
NCL1	YBL024W	CIT2	P08679	460 aa		3.18	□□□□□ -1.9
NCL1	YBL024W	HEM13	P11353	328 aa	Known RBP	3.18	□□□□□ -1.9
NCL1	YBL024W	ADP1	P25371	1049 aa		3.18	□□□□□ -1.9
NCL1	YBL024W	SPC42	P36094	363 aa		3.18	□□□□□ -1.9
NCL1	YBL024W	IRC24	P40580	263 aa		3.18	□□□□□ -1.9
NCL1	YBL024W	AVT1	P47082	602 aa		3.18	□□□□□ -1.9
NCL1	YBL024W	YNR063W	P53749	607 aa		3.18	□□□□□ -1.9
NCL1	YBL024W	EEB1	Q02891	456 aa		3.18	□□□□□ -1.9
NCL1	YBL024W	MRL1	Q06815	381 aa		3.18	□□□□□ -1.9
NCL1	YBL024W	BDF2	Q07442	638 aa		3.18	□□□□□ -1.9
NCL1	YBL024W	POL12	P38121	705 aa	Predicted RBP	3.17	□□□□□ -1.9
NCL1	YBL024W	NMD2	P38798	1089 aa	Known RBP	3.17	□□□□□ -1.9
NCL1	YBL024W	OYE3	P41816	400 aa	Predicted RBP	3.17	□□□□□ -1.9
NCL1	YBL024W	YGL140C	P53120	1219 aa		3.17	□□□□□ -1.9
NCL1	YBL024W	IOC4	Q04213	475 aa		3.17	□□□□□ -1.9
NCL1	YBL024W	YLR257W	Q06146	321 aa	Known RBP	3.17	□□□□□ -1.9
NCL1	YBL024W	PUS7	Q08647	676 aa	Known RBP	3.17	□□□□□ -1.9
NCL1	YBL024W	TRE1	Q08919	783 aa		3.17	□□□□□ -1.9
NCL1	YBL024W	CDC53	Q12018	815 aa	Known RBP	3.17	□□□□□ -1.9
NCL1	YBL024W	YVC1	Q12324	675 aa		3.17	□□□□□ -1.9
NCL1	YBL024W	SEC23	P15303	768 aa	Known RBP	3.16	□□□□□ -1.9
NCL1	YBL024W	STI1	P15705	589 aa	Known RBP RIP-Chip data	3.16	□□□□□ -1.9	not detected
NCL1	YBL024W	RET1	P22276	1149 aa	Known RBP	3.16	□□□□□ -1.9
NCL1	YBL024W	SPF1	P39986	1215 aa	Known RBP	3.16	□□□□□ -1.9
NCL1	YBL024W	BUD6	P41697	788 aa		3.16	□□□□□ -1.9
NCL1	YBL024W	DOS2	P54858	310 aa		3.16	□□□□□ -1.9
NCL1	YBL024W	EAR1	Q03212	550 aa		3.16	□□□□□ -1.9
NCL1	YBL024W	RPN4	Q03465	531 aa		3.16	□□□□□ -1.9
NCL1	YBL024W	TDA5	Q06417	326 aa	Known RBP	3.16	□□□□□ -1.9
NCL1	YBL024W	HDA2	Q06629	674 aa		3.16	□□□□□ -1.9
NCL1	YBL024W	PRO1	P32264	428 aa		3.16	□□□□□ -1.9
NCL1	YBL024W	ADD66	P36040	267 aa		3.16	□□□□□ -1.9
NCL1	YBL024W	PBP2	P38151	413 aa	Known RBP RIP-Chip data	3.16	□□□□□ -1.9	not detected
NCL1	YBL024W	HXT13	P39924	564 aa		3.16	□□□□□ -1.9

Retrieved 100 of 5,963 RNA–protein pairs in 37.3 ms