RNA–Protein interactions for RNA: ENSMUST00000108531.7

Nup88-203, Transcript of Nuclear pore complex protein Nup88, mousemouse

TSL 1 (best) BASIC

Gene Nup88, Length 2,453 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Nup88-203ENSMUST00000108531 Phf23Q8BSN5 401 aa15.94■□□□□ 0.14
Nup88-203ENSMUST00000108531 Elp1Q7TT37 1333 aaKnown RBP15.94■□□□□ 0.14
Nup88-203ENSMUST00000108531 Bag4Q8CI61 457 aa15.94■□□□□ 0.14
Nup88-203ENSMUST00000108531 Bloc1s4Q8VED2 215 aa15.94■□□□□ 0.14
Nup88-203ENSMUST00000108531 Rrp9Q91WM3 475 aaKnown RBP15.94■□□□□ 0.14
Nup88-203ENSMUST00000108531 SlkO54988 1233 aa15.93■□□□□ 0.14
Nup88-203ENSMUST00000108531 Dip2bQ3UH60 1574 aa15.93■□□□□ 0.14
Nup88-203ENSMUST00000108531 Prkar2bP31324 416 aa15.93■□□□□ 0.14
Nup88-203ENSMUST00000108531 Tet3Q8BG87 1668 aa15.93■□□□□ 0.14
Nup88-203ENSMUST00000108531 Txndc2Q6P902 515 aa15.92■□□□□ 0.14
Nup88-203ENSMUST00000108531 Smarca5Q91ZW3 1051 aaKnown RBP15.92■□□□□ 0.14
Nup88-203ENSMUST00000108531 1700019A02RikA0A087WPV9 146 aa15.92■□□□□ 0.14
Nup88-203ENSMUST00000108531 Paxip1Q6NZQ4 1056 aa15.92■□□□□ 0.14
Nup88-203ENSMUST00000108531 Zkscan1Q8BGS3 561 aaKnown RBP15.91■□□□□ 0.14
Nup88-203ENSMUST00000108531 NalcnQ8BXR5 1738 aa15.9■□□□□ 0.14
Nup88-203ENSMUST00000108531 Ppp1r18Q8BQ30 594 aa15.9■□□□□ 0.14
Nup88-203ENSMUST00000108531 Trim44Q9QXA7 346 aa15.9■□□□□ 0.14
Nup88-203ENSMUST00000108531 Tmx3Q8BXZ1 456 aa15.9■□□□□ 0.14
Nup88-203ENSMUST00000108531 Atg4a-psA0A0G2JFS9 396 aa15.89■□□□□ 0.13
Nup88-203ENSMUST00000108531 TmpoQ61033 693 aaKnown RBP15.89■□□□□ 0.13
Nup88-203ENSMUST00000108531 Atg4aQ8C9S8 396 aa15.89■□□□□ 0.13
Nup88-203ENSMUST00000108531 Cyp46a1Q9WVK8 500 aa15.89■□□□□ 0.13
Nup88-203ENSMUST00000108531 Slit2Q9R1B9 1521 aa15.89■□□□□ 0.13
Nup88-203ENSMUST00000108531 Slit3Q9WVB4 1523 aa15.88■□□□□ 0.13
Nup88-203ENSMUST00000108531 Stk11ipQ3TAA7 1072 aa15.88■□□□□ 0.13
Nup88-203ENSMUST00000108531 N4bp2F8VQG7 1678 aaKnown RBP15.88■□□□□ 0.13
Nup88-203ENSMUST00000108531 Rasa1E9PYG6 1038 aa15.88■□□□□ 0.13
Nup88-203ENSMUST00000108531 Sirt1Q923E4 737 aa15.88■□□□□ 0.13
Nup88-203ENSMUST00000108531 Cyp27a1Q9DBG1 533 aa15.88■□□□□ 0.13
Nup88-203ENSMUST00000108531 CemipQ8BI06 1361 aa15.87■□□□□ 0.13
Nup88-203ENSMUST00000108531 Znf335A2A5K6 1337 aa15.87■□□□□ 0.13
Nup88-203ENSMUST00000108531 IghaA0A0A6YXW6 389 aa15.87■□□□□ 0.13
Nup88-203ENSMUST00000108531 Pibf1E9Q6K3 756 aa15.87■□□□□ 0.13
Nup88-203ENSMUST00000108531 Ggnbp2Q5SV77 696 aa15.87■□□□□ 0.13
Nup88-203ENSMUST00000108531 Frmpd2A0A140LI67 1392 aa15.87■□□□□ 0.13
Nup88-203ENSMUST00000108531 Erc2Q6PH08 957 aa15.87■□□□□ 0.13
Nup88-203ENSMUST00000108531 Q9D2X8 372 aa15.87■□□□□ 0.13
Nup88-203ENSMUST00000108531 Mrps27Q8BK72 415 aaKnown RBP15.86■□□□□ 0.13
Nup88-203ENSMUST00000108531 ScaperF8VQ70 1398 aaKnown RBP15.86■□□□□ 0.13
Nup88-203ENSMUST00000108531 Rnf123Q5XPI3 1314 aa15.86■□□□□ 0.13
Nup88-203ENSMUST00000108531 Zfp777B9EKF4 885 aa15.86■□□□□ 0.13
Nup88-203ENSMUST00000108531 PtmsQ9D0J8 101 aaKnown RBP15.86■□□□□ 0.13
Nup88-203ENSMUST00000108531 ImpactO55091 318 aa15.85■□□□□ 0.13
Nup88-203ENSMUST00000108531 Sv2bQ8BG39 683 aa15.85■□□□□ 0.13
Nup88-203ENSMUST00000108531 HnrnpmQ9D0E1 729 aaKnown RBP15.85■□□□□ 0.13
Nup88-203ENSMUST00000108531 PzpQ61838 1495 aa15.84■□□□□ 0.13
Nup88-203ENSMUST00000108531 Rrp12Q6P5B0 1295 aaKnown RBP15.84■□□□□ 0.13
Nup88-203ENSMUST00000108531 Rtf1A2AQ19 715 aaKnown RBP15.84■□□□□ 0.13
Nup88-203ENSMUST00000108531 Vsig10D3YX43 558 aa15.84■□□□□ 0.13
Nup88-203ENSMUST00000108531 Prim1P20664 417 aa15.83■□□□□ 0.12
Nup88-203ENSMUST00000108531 Ddrgk1Q80WW9 315 aa15.83■□□□□ 0.12
Nup88-203ENSMUST00000108531 Ap3b2Q9JME5 1082 aa15.83■□□□□ 0.12
Nup88-203ENSMUST00000108531 Ubr1O70481 1757 aa15.83■□□□□ 0.12
Nup88-203ENSMUST00000108531 Zkscan2G3X952 960 aa15.83■□□□□ 0.12
Nup88-203ENSMUST00000108531 Chd2E9PZM4 1827 aaKnown RBP15.82■□□□□ 0.12
Nup88-203ENSMUST00000108531 Igsf1Q7TQA1 1317 aa15.82■□□□□ 0.12
Nup88-203ENSMUST00000108531 Rreb1Q3UH06 1700 aaKnown RBP15.82■□□□□ 0.12
Nup88-203ENSMUST00000108531 Trpm3Q5F4S9 1721 aa15.82■□□□□ 0.12
Nup88-203ENSMUST00000108531 Zkscan16A2ALW2 728 aa15.82■□□□□ 0.12
Nup88-203ENSMUST00000108531 Bcar3Q9QZK2 820 aa15.82■□□□□ 0.12
Nup88-203ENSMUST00000108531 Msh6P54276 1358 aaKnown RBP15.82■□□□□ 0.12
Nup88-203ENSMUST00000108531 Gnai2P08752 355 aaKnown RBP15.82■□□□□ 0.12
Nup88-203ENSMUST00000108531 Pik3c2aQ61194 1686 aa15.81■□□□□ 0.12
Nup88-203ENSMUST00000108531 Ptpn23Q6PB44 1692 aa15.81■□□□□ 0.12
Nup88-203ENSMUST00000108531 FancaQ9JL70 1439 aa15.81■□□□□ 0.12
Nup88-203ENSMUST00000108531 Parp14Q2EMV9 1817 aa15.81■□□□□ 0.12
Nup88-203ENSMUST00000108531 Nphp1Q9QY53 687 aa15.81■□□□□ 0.12
Nup88-203ENSMUST00000108531 Q3UJC8 639 aa15.8■□□□□ 0.12
Nup88-203ENSMUST00000108531 Scn7aB1AYL1 1681 aa15.8■□□□□ 0.12
Nup88-203ENSMUST00000108531 Zdhhc9P59268 364 aa15.8■□□□□ 0.12
Nup88-203ENSMUST00000108531 Cc2d1aQ8K1A6 943 aa15.8■□□□□ 0.12
Nup88-203ENSMUST00000108531 Map2P20357 1828 aa15.8■□□□□ 0.12
Nup88-203ENSMUST00000108531 Col16a1Q8BLX7 1580 aa15.8■□□□□ 0.12
Nup88-203ENSMUST00000108531 Fam83gQ5SWY7 812 aa15.79■□□□□ 0.12
Nup88-203ENSMUST00000108531 RestQ8VIG1 1082 aa15.79■□□□□ 0.12
Nup88-203ENSMUST00000108531 Arap3Q8R5G7 1538 aa15.79■□□□□ 0.12
Nup88-203ENSMUST00000108531 Srgap3Q812A2 1099 aa15.79■□□□□ 0.12
Nup88-203ENSMUST00000108531 Gdpd2Q9ESM6 539 aa15.79■□□□□ 0.12
Nup88-203ENSMUST00000108531 PtmaP26350 111 aa15.78■□□□□ 0.12
Nup88-203ENSMUST00000108531 Abcc10Q8R4P9 1501 aa15.78■□□□□ 0.12
Nup88-203ENSMUST00000108531 Rims2Q9EQZ7 1530 aa15.78■□□□□ 0.12
Nup88-203ENSMUST00000108531 Ptpdc1Q6NZK8 747 aa15.78■□□□□ 0.12
Nup88-203ENSMUST00000108531 Pknox2Q8BG99 474 aa15.78■□□□□ 0.12
Nup88-203ENSMUST00000108531 Ppp1r42Q8R1Z4 357 aa15.78■□□□□ 0.12
Nup88-203ENSMUST00000108531 Camta1A2A891 1682 aa15.78■□□□□ 0.12
Nup88-203ENSMUST00000108531 Vwa3bJ9JI28 736 aa15.77■□□□□ 0.12
Nup88-203ENSMUST00000108531 Snap23O09044 210 aa15.77■□□□□ 0.12
Nup88-203ENSMUST00000108531 Mmp8O70138 465 aa15.77■□□□□ 0.12
Nup88-203ENSMUST00000108531 NgefQ8CHT1 710 aa15.77■□□□□ 0.12
Nup88-203ENSMUST00000108531 Hmox1P14901 289 aa15.77■□□□□ 0.11
Nup88-203ENSMUST00000108531 NexnQ7TPW1 607 aa15.77■□□□□ 0.11
Nup88-203ENSMUST00000108531 PogkQ80TC5 607 aa15.77■□□□□ 0.11
Nup88-203ENSMUST00000108531 4931400O07RikQ9D4M5 137 aa15.77■□□□□ 0.11
Nup88-203ENSMUST00000108531 LlphQ9D945 130 aaKnown RBP15.77■□□□□ 0.11
Nup88-203ENSMUST00000108531 MccE9PWI3 1003 aa15.76■□□□□ 0.11
Nup88-203ENSMUST00000108531 CalcaP70160 136 aa15.76■□□□□ 0.11
Nup88-203ENSMUST00000108531 Eya1P97767 591 aa15.76■□□□□ 0.11
Nup88-203ENSMUST00000108531 Stk36Q69ZM6 1316 aa15.76■□□□□ 0.11
Nup88-203ENSMUST00000108531 Q3TQI7 289 aaKnown RBP15.76■□□□□ 0.11
Nup88-203ENSMUST00000108531 Nol8Q3UHX0 1147 aaKnown RBP15.76■□□□□ 0.11
Retrieved 100 of 22,080 RNA–protein pairs in 10.5 ms