Protein–RNA interactions for Protein: Q8BLX7

Col16a1, Collagen alpha-1(XVI) chain, mousemouse

Predictions only

Length 1,580 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col16a1Q8BLX7 Gm25239-201ENSMUST00000174915 86 ntBASIC53.5■■■■■ 6.16
Col16a1Q8BLX7 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC49.75■■■■■ 5.56
Col16a1Q8BLX7 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC48.81■■■■■ 5.4
Col16a1Q8BLX7 Gm24109-201ENSMUST00000175489 103 ntBASIC46.73■■■■■ 5.07
Col16a1Q8BLX7 Gm15042-201ENSMUST00000120212 883 ntBASIC46.26■■■■■ 5
Col16a1Q8BLX7 Gm15045-201ENSMUST00000117359 883 ntBASIC45.29■■■■■ 4.84
Col16a1Q8BLX7 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC45.23■■■■■ 4.83
Col16a1Q8BLX7 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC44.92■■■■■ 4.78
Col16a1Q8BLX7 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC44.84■■■■■ 4.77
Col16a1Q8BLX7 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC44.72■■■■■ 4.75
Col16a1Q8BLX7 Gm23366-201ENSMUST00000175022 89 ntBASIC44.54■■■■■ 4.72
Col16a1Q8BLX7 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC44.24■■■■■ 4.67
Col16a1Q8BLX7 AC153911.1-202ENSMUST00000218534 1034 ntBASIC43.63■■■■■ 4.58
Col16a1Q8BLX7 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC43.5■■■■■ 4.55
Col16a1Q8BLX7 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC43.27■■■■■ 4.52
Col16a1Q8BLX7 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC43.19■■■■■ 4.5
Col16a1Q8BLX7 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC43.16■■■■■ 4.5
Col16a1Q8BLX7 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC43.16■■■■■ 4.5
Col16a1Q8BLX7 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC42.78■■■■■ 4.44
Col16a1Q8BLX7 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC42.76■■■■■ 4.44
Col16a1Q8BLX7 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC42.7■■■■■ 4.43
Col16a1Q8BLX7 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC42.6■■■■■ 4.41
Col16a1Q8BLX7 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC42.44■■■■■ 4.39
Col16a1Q8BLX7 Gm25238-201ENSMUST00000174914 89 ntBASIC42.42■■■■■ 4.38
Col16a1Q8BLX7 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC42.34■■■■■ 4.37
Col16a1Q8BLX7 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC42.11■■■■■ 4.33
Col16a1Q8BLX7 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC42.07■■■■■ 4.33
Col16a1Q8BLX7 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC42.05■■■■■ 4.32
Col16a1Q8BLX7 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC41.86■■■■■ 4.29
Col16a1Q8BLX7 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC41.58■■■■■ 4.25
Col16a1Q8BLX7 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC41.57■■■■■ 4.25
Col16a1Q8BLX7 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC41.55■■■■■ 4.24
Col16a1Q8BLX7 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC41.54■■■■■ 4.24
Col16a1Q8BLX7 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC41.36■■■■■ 4.21
Col16a1Q8BLX7 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC41.33■■■■■ 4.21
Col16a1Q8BLX7 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC41.19■■■■■ 4.18
Col16a1Q8BLX7 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC41.15■■■■■ 4.18
Col16a1Q8BLX7 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC40.99■■■■■ 4.15
Col16a1Q8BLX7 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC40.97■■■■■ 4.15
Col16a1Q8BLX7 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC40.88■■■■■ 4.14
Col16a1Q8BLX7 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC40.76■■■■■ 4.11
Col16a1Q8BLX7 Gm25262-201ENSMUST00000174934 133 ntBASIC40.74■■■■■ 4.11
Col16a1Q8BLX7 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC40.66■■■■■ 4.1
Col16a1Q8BLX7 Psd-208ENSMUST00000224556 2034 ntBASIC40.55■■■■■ 4.08
Col16a1Q8BLX7 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC40.45■■■■■ 4.07
Col16a1Q8BLX7 Gm27325-201ENSMUST00000175467 74 ntBASIC40.45■■■■■ 4.07
Col16a1Q8BLX7 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC40.39■■■■■ 4.06
Col16a1Q8BLX7 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC40.29■■■■■ 4.04
Col16a1Q8BLX7 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC40.23■■■■■ 4.03
Col16a1Q8BLX7 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC40.16■■■■■ 4.02
Col16a1Q8BLX7 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC40.1■■■■■ 4.01
Col16a1Q8BLX7 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC40.09■■■■■ 4.01
Col16a1Q8BLX7 Rab21-202ENSMUST00000218831 843 ntBASIC40.03■■■■■ 4
Col16a1Q8BLX7 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC39.94■■■■□ 3.98
Col16a1Q8BLX7 Gm26115-201ENSMUST00000175605 87 ntBASIC39.93■■■■□ 3.98
Col16a1Q8BLX7 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC39.86■■■■□ 3.97
Col16a1Q8BLX7 Gm8109-201ENSMUST00000194076 746 ntBASIC39.75■■■■□ 3.95
Col16a1Q8BLX7 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC39.74■■■■□ 3.95
Col16a1Q8BLX7 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC39.72■■■■□ 3.95
Col16a1Q8BLX7 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC39.69■■■■□ 3.94
Col16a1Q8BLX7 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC39.68■■■■□ 3.94
Col16a1Q8BLX7 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC39.67■■■■□ 3.94
Col16a1Q8BLX7 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC39.66■■■■□ 3.94
Col16a1Q8BLX7 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC39.63■■■■□ 3.94
Col16a1Q8BLX7 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC39.63■■■■□ 3.93
Col16a1Q8BLX7 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC39.54■■■■□ 3.92
Col16a1Q8BLX7 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC39.5■■■■□ 3.91
Col16a1Q8BLX7 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC39.48■■■■□ 3.91
Col16a1Q8BLX7 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC39.42■■■■□ 3.9
Col16a1Q8BLX7 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC39.39■■■■□ 3.9
Col16a1Q8BLX7 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC39.36■■■■□ 3.89
Col16a1Q8BLX7 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC39.23■■■■□ 3.87
Col16a1Q8BLX7 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC39.21■■■■□ 3.87
Col16a1Q8BLX7 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC39.12■■■■□ 3.85
Col16a1Q8BLX7 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC39.11■■■■□ 3.85
Col16a1Q8BLX7 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC39.08■■■■□ 3.85
Col16a1Q8BLX7 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC39.04■■■■□ 3.84
Col16a1Q8BLX7 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC39■■■■□ 3.83
Col16a1Q8BLX7 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC38.97■■■■□ 3.83
Col16a1Q8BLX7 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC38.94■■■■□ 3.82
Col16a1Q8BLX7 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC38.91■■■■□ 3.82
Col16a1Q8BLX7 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC38.9■■■■□ 3.82
Col16a1Q8BLX7 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC38.84■■■■□ 3.81
Col16a1Q8BLX7 Gm17082-201ENSMUST00000166043 1091 ntBASIC38.83■■■■□ 3.81
Col16a1Q8BLX7 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC38.82■■■■□ 3.81
Col16a1Q8BLX7 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC38.82■■■■□ 3.81
Col16a1Q8BLX7 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC38.81■■■■□ 3.8
Col16a1Q8BLX7 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC38.72■■■■□ 3.79
Col16a1Q8BLX7 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC38.61■■■■□ 3.77
Col16a1Q8BLX7 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC38.59■■■■□ 3.77
Col16a1Q8BLX7 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC38.57■■■■□ 3.76
Col16a1Q8BLX7 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC38.47■■■■□ 3.75
Col16a1Q8BLX7 Gm24804-201ENSMUST00000174982 85 ntBASIC38.47■■■■□ 3.75
Col16a1Q8BLX7 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC38.46■■■■□ 3.75
Col16a1Q8BLX7 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC38.45■■■■□ 3.75
Col16a1Q8BLX7 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC38.43■■■■□ 3.74
Col16a1Q8BLX7 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC38.42■■■■□ 3.74
Col16a1Q8BLX7 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC38.36■■■■□ 3.73
Col16a1Q8BLX7 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC38.35■■■■□ 3.73
Col16a1Q8BLX7 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC38.32■■■■□ 3.73
Retrieved 100 of 76,532 protein–RNA pairs in 49.5 ms