RNA–Protein interactions for RNA: ENSMUST00000035283.10

Nup88-201, Transcript of Nuclear pore complex protein Nup88, mousemouse

TSL 1 (best) BASIC

Gene Nup88, Length 2,450 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Nup88-201ENSMUST00000035283 Atg4aQ8C9S8 396 aa16.51■□□□□ 0.23
Nup88-201ENSMUST00000035283 Ahdc1Q6PAL7 1594 aaKnown RBP16.5■□□□□ 0.23
Nup88-201ENSMUST00000035283 Tpm2P58774 284 aa16.5■□□□□ 0.23
Nup88-201ENSMUST00000035283 Mcm2P97310 904 aa16.5■□□□□ 0.23
Nup88-201ENSMUST00000035283 Aldh1l2Q8K009 923 aa16.5■□□□□ 0.23
Nup88-201ENSMUST00000035283 Gadd45bP22339 160 aa16.5■□□□□ 0.23
Nup88-201ENSMUST00000035283 Asxl2Q8BZ32 1370 aa16.49■□□□□ 0.23
Nup88-201ENSMUST00000035283 Pank2Q3U4S0 443 aa16.49■□□□□ 0.23
Nup88-201ENSMUST00000035283 Rbm27Q5SFM8 1060 aaKnown RBP16.49■□□□□ 0.23
Nup88-201ENSMUST00000035283 Syce3B5KM66 88 aa16.48■□□□□ 0.23
Nup88-201ENSMUST00000035283 Elp1Q7TT37 1333 aaKnown RBP16.48■□□□□ 0.23
Nup88-201ENSMUST00000035283 Zkscan16A2ALW2 728 aa16.48■□□□□ 0.23
Nup88-201ENSMUST00000035283 VgfQ0VGU4 617 aa16.48■□□□□ 0.23
Nup88-201ENSMUST00000035283 Cc2d1aQ8K1A6 943 aa16.48■□□□□ 0.23
Nup88-201ENSMUST00000035283 Sos1Q62245 1319 aa16.48■□□□□ 0.23
Nup88-201ENSMUST00000035283 MpripP97434 1024 aa16.47■□□□□ 0.23
Nup88-201ENSMUST00000035283 Mknk2Q8CDB0 459 aa16.47■□□□□ 0.23
Nup88-201ENSMUST00000035283 Cyp46a1Q9WVK8 500 aa16.47■□□□□ 0.23
Nup88-201ENSMUST00000035283 Chl1P70232 1209 aa16.47■□□□□ 0.23
Nup88-201ENSMUST00000035283 Tex2Q6ZPJ0 1128 aaKnown RBP16.47■□□□□ 0.23
Nup88-201ENSMUST00000035283 Prune1Q8BIW1 454 aa16.47■□□□□ 0.23
Nup88-201ENSMUST00000035283 Bcar3Q9QZK2 820 aa16.47■□□□□ 0.23
Nup88-201ENSMUST00000035283 Rnf214Q8BFU3 668 aaKnown RBP16.46■□□□□ 0.23
Nup88-201ENSMUST00000035283 Adamts7Q68SA9 1657 aa16.46■□□□□ 0.23
Nup88-201ENSMUST00000035283 Idi2Q8BFZ6 227 aa16.46■□□□□ 0.23
Nup88-201ENSMUST00000035283 Erc2Q6PH08 957 aa16.45■□□□□ 0.22
Nup88-201ENSMUST00000035283 Ush1cQ9ES64 910 aa16.45■□□□□ 0.22
Nup88-201ENSMUST00000035283 Irf5P56477 497 aa16.45■□□□□ 0.22
Nup88-201ENSMUST00000035283 Fez1Q8K0X8 392 aa16.45■□□□□ 0.22
Nup88-201ENSMUST00000035283 Phf23Q8BSN5 401 aa16.44■□□□□ 0.22
Nup88-201ENSMUST00000035283 Spef2Q8C9J3 1734 aa16.44■□□□□ 0.22
Nup88-201ENSMUST00000035283 Stk31Q99MW1 1018 aa16.44■□□□□ 0.22
Nup88-201ENSMUST00000035283 Zscan25B2RX31 543 aa16.43■□□□□ 0.22
Nup88-201ENSMUST00000035283 Eif4a2P10630 407 aa16.43■□□□□ 0.22
Nup88-201ENSMUST00000035283 Ggnbp2Q5SV77 696 aa16.43■□□□□ 0.22
Nup88-201ENSMUST00000035283 E4f1Q8CCE9 783 aa16.43■□□□□ 0.22
Nup88-201ENSMUST00000035283 Pnma3Q8JZW8 466 aa16.43■□□□□ 0.22
Nup88-201ENSMUST00000035283 Gzf1Q4VBD9 706 aa16.42■□□□□ 0.22
Nup88-201ENSMUST00000035283 NexnQ7TPW1 607 aa16.42■□□□□ 0.22
Nup88-201ENSMUST00000035283 Mrps27Q8BK72 415 aaKnown RBP16.42■□□□□ 0.22
Nup88-201ENSMUST00000035283 ScaperF8VQ70 1398 aaKnown RBP16.42■□□□□ 0.22
Nup88-201ENSMUST00000035283 4930407I10RikD3Z5T8 1512 aa16.42■□□□□ 0.22
Nup88-201ENSMUST00000035283 Vwa3bJ9JI28 736 aa16.42■□□□□ 0.22
Nup88-201ENSMUST00000035283 Cpa2Q504N0 417 aa16.42■□□□□ 0.22
Nup88-201ENSMUST00000035283 Pdcl2Q78Y63 240 aa16.42■□□□□ 0.22
Nup88-201ENSMUST00000035283 Plekhg1F6S200 1446 aa16.41■□□□□ 0.22
Nup88-201ENSMUST00000035283 Rcan3Q9JKK0 239 aa16.41■□□□□ 0.22
Nup88-201ENSMUST00000035283 Phactr2B1AVP0 632 aa16.41■□□□□ 0.22
Nup88-201ENSMUST00000035283 Zfp777B9EKF4 885 aa16.41■□□□□ 0.22
Nup88-201ENSMUST00000035283 Becn1O88597 448 aa16.4■□□□□ 0.22
Nup88-201ENSMUST00000035283 Prim1P20664 417 aa16.4■□□□□ 0.22
Nup88-201ENSMUST00000035283 Afap1Q80YS6 731 aa16.4■□□□□ 0.22
Nup88-201ENSMUST00000035283 RestQ8VIG1 1082 aa16.4■□□□□ 0.22
Nup88-201ENSMUST00000035283 Gse1Q3U3C9 1213 aa16.4■□□□□ 0.22
Nup88-201ENSMUST00000035283 Tshz3Q8CGV9 1081 aa16.39■□□□□ 0.21
Nup88-201ENSMUST00000035283 Gm45015A0A140LII9 184 aa16.39■□□□□ 0.21
Nup88-201ENSMUST00000035283 Gm18336A0A140LIU8 765 aa16.39■□□□□ 0.21
Nup88-201ENSMUST00000035283 Mum1Q6DID5 682 aa16.39■□□□□ 0.21
Nup88-201ENSMUST00000035283 Gripap1Q8VD04 806 aa16.39■□□□□ 0.21
Nup88-201ENSMUST00000035283 NpatQ8BMA5 1420 aa16.39■□□□□ 0.21
Nup88-201ENSMUST00000035283 Snap23O09044 210 aa16.38■□□□□ 0.21
Nup88-201ENSMUST00000035283 Nwd1A6H603 1563 aa16.38■□□□□ 0.21
Nup88-201ENSMUST00000035283 Hmox1P14901 289 aa16.38■□□□□ 0.21
Nup88-201ENSMUST00000035283 Ap3b2Q9JME5 1082 aa16.38■□□□□ 0.21
Nup88-201ENSMUST00000035283 TmpoQ61033 693 aaKnown RBP16.37■□□□□ 0.21
Nup88-201ENSMUST00000035283 Srgap3Q812A2 1099 aa16.37■□□□□ 0.21
Nup88-201ENSMUST00000035283 Kdm4aQ8BW72 1064 aa16.37■□□□□ 0.21
Nup88-201ENSMUST00000035283 PtmsQ9D0J8 101 aaKnown RBP16.37■□□□□ 0.21
Nup88-201ENSMUST00000035283 Kif13aQ9EQW7 1749 aa16.37■□□□□ 0.21
Nup88-201ENSMUST00000035283 Kif4P33174 1231 aa16.37■□□□□ 0.21
Nup88-201ENSMUST00000035283 Nol11Q8BJW5 723 aaKnown RBP16.37■□□□□ 0.21
Nup88-201ENSMUST00000035283 Sv2bQ8BG39 683 aa16.36■□□□□ 0.21
Nup88-201ENSMUST00000035283 Chd1lQ9CXF7 900 aa16.36■□□□□ 0.21
Nup88-201ENSMUST00000035283 Fam83gQ5SWY7 812 aa16.36■□□□□ 0.21
Nup88-201ENSMUST00000035283 Ptpdc1Q6NZK8 747 aa16.36■□□□□ 0.21
Nup88-201ENSMUST00000035283 Nol12Q8BG17 217 aa16.36■□□□□ 0.21
Nup88-201ENSMUST00000035283 Zkscan2G3X952 960 aa16.35■□□□□ 0.21
Nup88-201ENSMUST00000035283 EvcP57680 1005 aa16.35■□□□□ 0.21
Nup88-201ENSMUST00000035283 Filip1lQ6P6L0 1131 aa16.35■□□□□ 0.21
Nup88-201ENSMUST00000035283 Cul9Q80TT8 1865 aa16.35■□□□□ 0.21
Nup88-201ENSMUST00000035283 Kif20bQ80WE4 1774 aaKnown RBP16.35■□□□□ 0.21
Nup88-201ENSMUST00000035283 PplQ9R269 1755 aa16.35■□□□□ 0.21
Nup88-201ENSMUST00000035283 Ppp1r42Q8R1Z4 357 aa16.35■□□□□ 0.21
Nup88-201ENSMUST00000035283 LlphQ9D945 130 aaKnown RBP16.35■□□□□ 0.21
Nup88-201ENSMUST00000035283 Rnf123Q5XPI3 1314 aa16.34■□□□□ 0.21
Nup88-201ENSMUST00000035283 Hsp90b1P08113 802 aaKnown RBP16.34■□□□□ 0.21
Nup88-201ENSMUST00000035283 Nphp1Q9QY53 687 aa16.34■□□□□ 0.21
Nup88-201ENSMUST00000035283 Mindy4Q3UQI9 744 aa16.34■□□□□ 0.21
Nup88-201ENSMUST00000035283 Adgrb1Q3UHD1 1582 aa16.34■□□□□ 0.21
Nup88-201ENSMUST00000035283 Itsn1Q9Z0R4 1714 aa16.33■□□□□ 0.2
Nup88-201ENSMUST00000035283 Gnai2P08752 355 aaKnown RBP16.33■□□□□ 0.2
Nup88-201ENSMUST00000035283 Chd4Q6PDQ2 1915 aaKnown RBP16.32■□□□□ 0.2
Nup88-201ENSMUST00000035283 IbspQ61711 324 aa16.32■□□□□ 0.2
Nup88-201ENSMUST00000035283 St18Q80TY4 1045 aa16.32■□□□□ 0.2
Nup88-201ENSMUST00000035283 PtpruB1AUH1 1446 aa16.32■□□□□ 0.2
Nup88-201ENSMUST00000035283 Kif1aP33173 1695 aa16.32■□□□□ 0.2
Nup88-201ENSMUST00000035283 Rtf1A2AQ19 715 aaKnown RBP16.31■□□□□ 0.2
Nup88-201ENSMUST00000035283 CatipB9EKE5 520 aa16.31■□□□□ 0.2
Nup88-201ENSMUST00000035283 Hoxb7P09024 217 aa16.31■□□□□ 0.2
Nup88-201ENSMUST00000035283 Nol8Q3UHX0 1147 aaKnown RBP16.31■□□□□ 0.2
Retrieved 100 of 22,080 RNA–protein pairs in 40.1 ms