Protein–RNA interactions for Protein: Q9CXF7

Chd1l, Chromodomain-helicase-DNA-binding protein 1-like, mousemouse

Predictions only

Length 900 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd1lQ9CXF7 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC39,48■■■■□ 3,91
Chd1lQ9CXF7 Gm25239-201ENSMUST00000174915 86 ntBASIC38,11■■■■□ 3,69
Chd1lQ9CXF7 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC38,01■■■■□ 3,67
Chd1lQ9CXF7 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC37,92■■■■□ 3,66
Chd1lQ9CXF7 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC37,12■■■■□ 3,53
Chd1lQ9CXF7 Psd-208ENSMUST00000224556 2034 ntBASIC37,1■■■■□ 3,53
Chd1lQ9CXF7 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC36,59■■■■□ 3,45
Chd1lQ9CXF7 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC36,01■■■■□ 3,36
Chd1lQ9CXF7 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC35,79■■■■□ 3,32
Chd1lQ9CXF7 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC35,39■■■■□ 3,26
Chd1lQ9CXF7 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC35,24■■■■□ 3,23
Chd1lQ9CXF7 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC35,24■■■■□ 3,23
Chd1lQ9CXF7 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC35,18■■■■□ 3,22
Chd1lQ9CXF7 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC34,96■■■■□ 3,19
Chd1lQ9CXF7 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC34,82■■■■□ 3,16
Chd1lQ9CXF7 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC34,77■■■■□ 3,16
Chd1lQ9CXF7 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC34,74■■■■□ 3,15
Chd1lQ9CXF7 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC34,66■■■■□ 3,14
Chd1lQ9CXF7 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC34,59■■■■□ 3,13
Chd1lQ9CXF7 Gm15042-201ENSMUST00000120212 883 ntBASIC34,47■■■■□ 3,11
Chd1lQ9CXF7 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC34,4■■■■□ 3,1
Chd1lQ9CXF7 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC34,27■■■■□ 3,08
Chd1lQ9CXF7 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC34,26■■■■□ 3,08
Chd1lQ9CXF7 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC34,25■■■■□ 3,07
Chd1lQ9CXF7 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC34■■■■□ 3,03
Chd1lQ9CXF7 Gm15045-201ENSMUST00000117359 883 ntBASIC33,98■■■■□ 3,03
Chd1lQ9CXF7 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC33,96■■■■□ 3,03
Chd1lQ9CXF7 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC33,8■■■■□ 3
Chd1lQ9CXF7 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC33,74■■■□□ 2,99
Chd1lQ9CXF7 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC33,72■■■□□ 2,99
Chd1lQ9CXF7 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC33,71■■■□□ 2,99
Chd1lQ9CXF7 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC33,6■■■□□ 2,97
Chd1lQ9CXF7 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC33,57■■■□□ 2,96
Chd1lQ9CXF7 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC33,56■■■□□ 2,96
Chd1lQ9CXF7 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC33,55■■■□□ 2,96
Chd1lQ9CXF7 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC33,5■■■□□ 2,95
Chd1lQ9CXF7 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC33,49■■■□□ 2,95
Chd1lQ9CXF7 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC33,43■■■□□ 2,94
Chd1lQ9CXF7 Gm42596-201ENSMUST00000196305 1958 ntBASIC33,32■■■□□ 2,93
Chd1lQ9CXF7 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC33,31■■■□□ 2,92
Chd1lQ9CXF7 Gm10524-201ENSMUST00000181931 1893 ntBASIC33,25■■■□□ 2,91
Chd1lQ9CXF7 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC33,24■■■□□ 2,91
Chd1lQ9CXF7 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC33,22■■■□□ 2,91
Chd1lQ9CXF7 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC33,17■■■□□ 2,9
Chd1lQ9CXF7 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC33,16■■■□□ 2,9
Chd1lQ9CXF7 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC33■■■□□ 2,87
Chd1lQ9CXF7 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC32,98■■■□□ 2,87
Chd1lQ9CXF7 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC32,9■■■□□ 2,86
Chd1lQ9CXF7 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC32,89■■■□□ 2,86
Chd1lQ9CXF7 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC32,88■■■□□ 2,85
Chd1lQ9CXF7 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC32,86■■■□□ 2,85
Chd1lQ9CXF7 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC32,79■■■□□ 2,84
Chd1lQ9CXF7 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC32,78■■■□□ 2,84
Chd1lQ9CXF7 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC32,67■■■□□ 2,82
Chd1lQ9CXF7 Gm24109-201ENSMUST00000175489 103 ntBASIC32,53■■■□□ 2,8
Chd1lQ9CXF7 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC32,52■■■□□ 2,8
Chd1lQ9CXF7 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC32,43■■■□□ 2,78
Chd1lQ9CXF7 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC32,41■■■□□ 2,78
Chd1lQ9CXF7 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC32,41■■■□□ 2,78
Chd1lQ9CXF7 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC32,37■■■□□ 2,77
Chd1lQ9CXF7 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC32,33■■■□□ 2,77
Chd1lQ9CXF7 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC32,26■■■□□ 2,75
Chd1lQ9CXF7 CT025624.2-201ENSMUST00000223609 1909 ntBASIC32,21■■■□□ 2,75
Chd1lQ9CXF7 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC32,17■■■□□ 2,74
Chd1lQ9CXF7 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC32,09■■■□□ 2,73
Chd1lQ9CXF7 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC32,04■■■□□ 2,72
Chd1lQ9CXF7 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC32,03■■■□□ 2,72
Chd1lQ9CXF7 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC32,01■■■□□ 2,71
Chd1lQ9CXF7 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC32,01■■■□□ 2,71
Chd1lQ9CXF7 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC32■■■□□ 2,71
Chd1lQ9CXF7 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC32■■■□□ 2,71
Chd1lQ9CXF7 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC31,99■■■□□ 2,71
Chd1lQ9CXF7 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC31,92■■■□□ 2,7
Chd1lQ9CXF7 Gm23366-201ENSMUST00000175022 89 ntBASIC31,92■■■□□ 2,7
Chd1lQ9CXF7 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC31,83■■■□□ 2,69
Chd1lQ9CXF7 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC31,82■■■□□ 2,68
Chd1lQ9CXF7 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC31,78■■■□□ 2,68
Chd1lQ9CXF7 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC31,74■■■□□ 2,67
Chd1lQ9CXF7 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC31,73■■■□□ 2,67
Chd1lQ9CXF7 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC31,72■■■□□ 2,67
Chd1lQ9CXF7 AC153911.1-202ENSMUST00000218534 1034 ntBASIC31,69■■■□□ 2,66
Chd1lQ9CXF7 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC31,66■■■□□ 2,66
Chd1lQ9CXF7 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC31,61■■■□□ 2,65
Chd1lQ9CXF7 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC31,58■■■□□ 2,65
Chd1lQ9CXF7 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC31,56■■■□□ 2,64
Chd1lQ9CXF7 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC31,55■■■□□ 2,64
Chd1lQ9CXF7 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC31,53■■■□□ 2,64
Chd1lQ9CXF7 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC31,51■■■□□ 2,63
Chd1lQ9CXF7 Cadm4-201ENSMUST00000068023 2161 ntAPPRIS P1 TSL 1 (best) BASIC31,51■■■□□ 2,63
Chd1lQ9CXF7 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC31,41■■■□□ 2,62
Chd1lQ9CXF7 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC31,38■■■□□ 2,61
Chd1lQ9CXF7 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC31,36■■■□□ 2,61
Chd1lQ9CXF7 Ctbp1-206ENSMUST00000201575 2091 ntTSL 1 (best) BASIC31,34■■■□□ 2,61
Chd1lQ9CXF7 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC31,34■■■□□ 2,61
Chd1lQ9CXF7 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC31,33■■■□□ 2,61
Chd1lQ9CXF7 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC31,3■■■□□ 2,6
Chd1lQ9CXF7 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC31,3■■■□□ 2,6
Chd1lQ9CXF7 Snx24-202ENSMUST00000165032 1880 ntAPPRIS P1 TSL 1 (best) BASIC31,29■■■□□ 2,6
Chd1lQ9CXF7 Orai1-202ENSMUST00000121652 1875 ntAPPRIS P1 TSL 1 (best) BASIC31,27■■■□□ 2,6
Chd1lQ9CXF7 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC31,26■■■□□ 2,59
Retrieved 100 of 76,532 protein–RNA pairs in 12 ms