Protein–RNA interactions for Protein: Q9CXF7

Chd1l, Chromodomain-helicase-DNA-binding protein 1-like, mousemouse

Predictions only

Length 900 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd1lQ9CXF7 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC39.48■■■■□ 3.91
Chd1lQ9CXF7 Gm25239-201ENSMUST00000174915 86 ntBASIC38.11■■■■□ 3.69
Chd1lQ9CXF7 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC38.01■■■■□ 3.67
Chd1lQ9CXF7 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC37.92■■■■□ 3.66
Chd1lQ9CXF7 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC37.12■■■■□ 3.53
Chd1lQ9CXF7 Psd-208ENSMUST00000224556 2034 ntBASIC37.1■■■■□ 3.53
Chd1lQ9CXF7 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC36.59■■■■□ 3.45
Chd1lQ9CXF7 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC36.01■■■■□ 3.36
Chd1lQ9CXF7 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC35.79■■■■□ 3.32
Chd1lQ9CXF7 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC35.39■■■■□ 3.26
Chd1lQ9CXF7 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC35.24■■■■□ 3.23
Chd1lQ9CXF7 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC35.24■■■■□ 3.23
Chd1lQ9CXF7 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC35.18■■■■□ 3.22
Chd1lQ9CXF7 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC34.96■■■■□ 3.19
Chd1lQ9CXF7 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC34.82■■■■□ 3.16
Chd1lQ9CXF7 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC34.77■■■■□ 3.16
Chd1lQ9CXF7 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC34.74■■■■□ 3.15
Chd1lQ9CXF7 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC34.66■■■■□ 3.14
Chd1lQ9CXF7 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC34.59■■■■□ 3.13
Chd1lQ9CXF7 Gm15042-201ENSMUST00000120212 883 ntBASIC34.47■■■■□ 3.11
Chd1lQ9CXF7 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC34.4■■■■□ 3.1
Chd1lQ9CXF7 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC34.27■■■■□ 3.08
Chd1lQ9CXF7 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC34.26■■■■□ 3.08
Chd1lQ9CXF7 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC34.25■■■■□ 3.07
Chd1lQ9CXF7 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC34■■■■□ 3.03
Chd1lQ9CXF7 Gm15045-201ENSMUST00000117359 883 ntBASIC33.98■■■■□ 3.03
Chd1lQ9CXF7 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC33.96■■■■□ 3.03
Chd1lQ9CXF7 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC33.8■■■■□ 3
Chd1lQ9CXF7 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC33.74■■■□□ 2.99
Chd1lQ9CXF7 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC33.72■■■□□ 2.99
Chd1lQ9CXF7 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC33.71■■■□□ 2.99
Chd1lQ9CXF7 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC33.6■■■□□ 2.97
Chd1lQ9CXF7 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC33.57■■■□□ 2.96
Chd1lQ9CXF7 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC33.56■■■□□ 2.96
Chd1lQ9CXF7 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC33.55■■■□□ 2.96
Chd1lQ9CXF7 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC33.5■■■□□ 2.95
Chd1lQ9CXF7 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC33.49■■■□□ 2.95
Chd1lQ9CXF7 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC33.43■■■□□ 2.94
Chd1lQ9CXF7 Gm42596-201ENSMUST00000196305 1958 ntBASIC33.32■■■□□ 2.93
Chd1lQ9CXF7 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC33.31■■■□□ 2.92
Chd1lQ9CXF7 Gm10524-201ENSMUST00000181931 1893 ntBASIC33.25■■■□□ 2.91
Chd1lQ9CXF7 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC33.24■■■□□ 2.91
Chd1lQ9CXF7 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC33.22■■■□□ 2.91
Chd1lQ9CXF7 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC33.17■■■□□ 2.9
Chd1lQ9CXF7 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC33.16■■■□□ 2.9
Chd1lQ9CXF7 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC33■■■□□ 2.87
Chd1lQ9CXF7 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC32.98■■■□□ 2.87
Chd1lQ9CXF7 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC32.9■■■□□ 2.86
Chd1lQ9CXF7 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC32.89■■■□□ 2.86
Chd1lQ9CXF7 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC32.88■■■□□ 2.85
Chd1lQ9CXF7 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC32.86■■■□□ 2.85
Chd1lQ9CXF7 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC32.79■■■□□ 2.84
Chd1lQ9CXF7 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC32.78■■■□□ 2.84
Chd1lQ9CXF7 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC32.67■■■□□ 2.82
Chd1lQ9CXF7 Gm24109-201ENSMUST00000175489 103 ntBASIC32.53■■■□□ 2.8
Chd1lQ9CXF7 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC32.52■■■□□ 2.8
Chd1lQ9CXF7 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC32.43■■■□□ 2.78
Chd1lQ9CXF7 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC32.41■■■□□ 2.78
Chd1lQ9CXF7 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC32.41■■■□□ 2.78
Chd1lQ9CXF7 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC32.37■■■□□ 2.77
Chd1lQ9CXF7 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC32.33■■■□□ 2.77
Chd1lQ9CXF7 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC32.26■■■□□ 2.75
Chd1lQ9CXF7 CT025624.2-201ENSMUST00000223609 1909 ntBASIC32.21■■■□□ 2.75
Chd1lQ9CXF7 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC32.17■■■□□ 2.74
Chd1lQ9CXF7 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC32.09■■■□□ 2.73
Chd1lQ9CXF7 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC32.04■■■□□ 2.72
Chd1lQ9CXF7 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC32.03■■■□□ 2.72
Chd1lQ9CXF7 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC32.01■■■□□ 2.71
Chd1lQ9CXF7 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC32.01■■■□□ 2.71
Chd1lQ9CXF7 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC32■■■□□ 2.71
Chd1lQ9CXF7 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC32■■■□□ 2.71
Chd1lQ9CXF7 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC31.99■■■□□ 2.71
Chd1lQ9CXF7 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC31.92■■■□□ 2.7
Chd1lQ9CXF7 Gm23366-201ENSMUST00000175022 89 ntBASIC31.92■■■□□ 2.7
Chd1lQ9CXF7 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC31.83■■■□□ 2.69
Chd1lQ9CXF7 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC31.82■■■□□ 2.68
Chd1lQ9CXF7 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC31.78■■■□□ 2.68
Chd1lQ9CXF7 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC31.74■■■□□ 2.67
Chd1lQ9CXF7 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC31.73■■■□□ 2.67
Chd1lQ9CXF7 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC31.72■■■□□ 2.67
Chd1lQ9CXF7 AC153911.1-202ENSMUST00000218534 1034 ntBASIC31.69■■■□□ 2.66
Chd1lQ9CXF7 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
Chd1lQ9CXF7 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
Chd1lQ9CXF7 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC31.58■■■□□ 2.65
Chd1lQ9CXF7 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
Chd1lQ9CXF7 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC31.55■■■□□ 2.64
Chd1lQ9CXF7 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC31.53■■■□□ 2.64
Chd1lQ9CXF7 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC31.51■■■□□ 2.63
Chd1lQ9CXF7 Cadm4-201ENSMUST00000068023 2161 ntAPPRIS P1 TSL 1 (best) BASIC31.51■■■□□ 2.63
Chd1lQ9CXF7 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC31.41■■■□□ 2.62
Chd1lQ9CXF7 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC31.38■■■□□ 2.61
Chd1lQ9CXF7 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC31.36■■■□□ 2.61
Chd1lQ9CXF7 Ctbp1-206ENSMUST00000201575 2091 ntTSL 1 (best) BASIC31.34■■■□□ 2.61
Chd1lQ9CXF7 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC31.34■■■□□ 2.61
Chd1lQ9CXF7 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
Chd1lQ9CXF7 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC31.3■■■□□ 2.6
Chd1lQ9CXF7 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
Chd1lQ9CXF7 Snx24-202ENSMUST00000165032 1880 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
Chd1lQ9CXF7 Orai1-202ENSMUST00000121652 1875 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
Chd1lQ9CXF7 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC31.26■■■□□ 2.59
Retrieved 100 of 76,532 protein–RNA pairs in 29.7 ms