RNA–Protein interactions for RNA: YPR108W

RPN7, Transcript of Essential non-ATPase regulatory subunit of the 26S proteasome, yeast

Gene RPN7, Length 1,290 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RPN7	YPR108W	ICP55	P40051	511 aa		6.62	□□□□□ -1.35
RPN7	YPR108W	NPA3	P47122	385 aa		6.62	□□□□□ -1.35
RPN7	YPR108W	CTF18	P49956	741 aa		6.62	□□□□□ -1.35
RPN7	YPR108W	GDE1	Q02979	1223 aa		6.62	□□□□□ -1.35
RPN7	YPR108W	THI3	Q07471	609 aa		6.62	□□□□□ -1.35
RPN7	YPR108W	CTI6	Q08923	506 aa		6.62	□□□□□ -1.35
RPN7	YPR108W	DDP1	Q99321	188 aa	Known RBP	6.62	□□□□□ -1.35
RPN7	YPR108W	GAR1	P28007	205 aa	Known RBP	6.61	□□□□□ -1.35
RPN7	YPR108W	MGM1	P32266	881 aa		6.61	□□□□□ -1.35
RPN7	YPR108W	YKL222C	P35995	705 aa		6.61	□□□□□ -1.35
RPN7	YPR108W	MRPL10	P36520	322 aa		6.61	□□□□□ -1.35
RPN7	YPR108W	RFC5	P38251	354 aa		6.61	□□□□□ -1.35
RPN7	YPR108W	KIC1	P38692	1080 aa		6.61	□□□□□ -1.35
RPN7	YPR108W	RTS1	P38903	757 aa		6.61	□□□□□ -1.35
RPN7	YPR108W	CIR1	P42940	261 aa		6.61	□□□□□ -1.35
RPN7	YPR108W	HCR1	Q05775	265 aa	Known RBP	6.61	□□□□□ -1.35
RPN7	YPR108W	RPN7	Q06103	429 aa	Known RBP	6.61	□□□□□ -1.35
RPN7	YPR108W	ACK1	Q07622	623 aa	Predicted RBP	6.61	□□□□□ -1.35
RPN7	YPR108W	APC11	Q12157	165 aa		6.61	□□□□□ -1.35
RPN7	YPR108W	NOP58	Q12499	511 aa	Known RBP	6.61	□□□□□ -1.35
RPN7	YPR108W	HSP82	P02829	709 aa	Known RBP	6.6	□□□□□ -1.35
RPN7	YPR108W	DIT2	P21595	489 aa		6.6	□□□□□ -1.35
RPN7	YPR108W	MDL2	P33311	773 aa		6.6	□□□□□ -1.35
RPN7	YPR108W	RER2	P35196	286 aa		6.6	□□□□□ -1.35
RPN7	YPR108W	SAP190	P36123	1033 aa		6.6	□□□□□ -1.35
RPN7	YPR108W	RFT1	P38206	574 aa	Predicted RBP	6.6	□□□□□ -1.35
RPN7	YPR108W	TPM2	P40414	161 aa		6.6	□□□□□ -1.35
RPN7	YPR108W	CWH41	P53008	833 aa		6.6	□□□□□ -1.35
RPN7	YPR108W	QCR6	P00127	147 aa		6.59	□□□□□ -1.35
RPN7	YPR108W	HXK1	P04806	485 aa	Known RBP	6.59	□□□□□ -1.35
RPN7	YPR108W	FRD1	P32614	470 aa	Known RBP	6.59	□□□□□ -1.35
RPN7	YPR108W	SAS3	P34218	831 aa		6.59	□□□□□ -1.35
RPN7	YPR108W	RKM3	P38222	552 aa		6.59	□□□□□ -1.35
RPN7	YPR108W	VID28	P40547	921 aa		6.59	□□□□□ -1.35
RPN7	YPR108W	YFH7	P43591	353 aa		6.59	□□□□□ -1.35
RPN7	YPR108W	UFD2	P54860	961 aa		6.59	□□□□□ -1.35
RPN7	YPR108W	CRF1	Q04930	467 aa		6.59	□□□□□ -1.35
RPN7	YPR108W	YPL260W	Q08977	551 aa		6.59	□□□□□ -1.35
RPN7	YPR108W	TIP41	Q12199	356 aa		6.59	□□□□□ -1.35
RPN7	YPR108W	CPA2	P03965	1118 aa	Known RBP	6.58	□□□□□ -1.36
RPN7	YPR108W	RAM1	P22007	431 aa		6.58	□□□□□ -1.36
RPN7	YPR108W	PWP2	P25635	923 aa	Known RBP	6.58	□□□□□ -1.36
RPN7	YPR108W	MAL33	P38157	468 aa		6.58	□□□□□ -1.36
RPN7	YPR108W	HAL5	P38970	855 aa	Known RBP	6.58	□□□□□ -1.36
RPN7	YPR108W	NPR2	P39923	615 aa		6.58	□□□□□ -1.36
RPN7	YPR108W	RPS15	Q01855	142 aa	Known RBP	6.58	□□□□□ -1.36
RPN7	YPR108W	UBP16	Q02863	499 aa		6.58	□□□□□ -1.36
RPN7	YPR108W	ERO1	Q03103	563 aa		6.58	□□□□□ -1.36
RPN7	YPR108W	PKH3	Q03306	898 aa	Predicted RBP	6.58	□□□□□ -1.36
RPN7	YPR108W	CSM3	Q04659	317 aa		6.58	□□□□□ -1.36
RPN7	YPR108W	INM2	Q05533	292 aa		6.58	□□□□□ -1.36
RPN7	YPR108W	SGD1	Q06132	899 aa		6.58	□□□□□ -1.36
RPN7	YPR108W	ISU2	Q12056	156 aa		6.58	□□□□□ -1.36
RPN7	YPR108W	RIM15	P43565	1770 aa		6.58	□□□□□ -1.36
RPN7	YPR108W	COX6	P00427	148 aa		6.57	□□□□□ -1.36
RPN7	YPR108W	CYC8	P14922	966 aa		6.57	□□□□□ -1.36
RPN7	YPR108W	RGP1	P16664	663 aa		6.57	□□□□□ -1.36
RPN7	YPR108W	KRE2	P27809	442 aa		6.57	□□□□□ -1.36
RPN7	YPR108W	MPE1	P35728	441 aa	Known RBP	6.57	□□□□□ -1.36
RPN7	YPR108W	GLO3	P38682	493 aa	Known RBP	6.57	□□□□□ -1.36
RPN7	YPR108W	TCD1	P38756	429 aa		6.57	□□□□□ -1.36
RPN7	YPR108W	TOM71	P38825	639 aa	Known RBP	6.57	□□□□□ -1.36
RPN7	YPR108W	VPS8	P39702	1274 aa		6.57	□□□□□ -1.36
RPN7	YPR108W	YMR147W	P40218	223 aa	Known RBP	6.57	□□□□□ -1.36
RPN7	YPR108W	MSH4	P40965	878 aa	Predicted RBP	6.57	□□□□□ -1.36
RPN7	YPR108W	APL6	P46682	809 aa		6.57	□□□□□ -1.36
RPN7	YPR108W	SMC3	P47037	1230 aa		6.57	□□□□□ -1.36
RPN7	YPR108W	RDS1	P25611	832 aa		6.56	□□□□□ -1.36
RPN7	YPR108W	GLN1	P32288	370 aa	Known RBP	6.56	□□□□□ -1.36
RPN7	YPR108W	DID4	P36108	232 aa		6.56	□□□□□ -1.36
RPN7	YPR108W	KTR3	P38130	404 aa	Predicted RBP	6.56	□□□□□ -1.36
RPN7	YPR108W	TOS1	P38288	455 aa		6.56	□□□□□ -1.36
RPN7	YPR108W	STU2	P46675	888 aa		6.56	□□□□□ -1.36
RPN7	YPR108W	FYV8	P46949	817 aa	Known RBP	6.56	□□□□□ -1.36
RPN7	YPR108W	TCB2	P48231	1178 aa		6.56	□□□□□ -1.36
RPN7	YPR108W	LSB1	P53281	241 aa		6.56	□□□□□ -1.36
RPN7	YPR108W	NAF1	P53919	492 aa	Known RBP	6.56	□□□□□ -1.36
RPN7	YPR108W	VPS60	Q03390	229 aa		6.56	□□□□□ -1.36
RPN7	YPR108W	PRP42	Q03776	544 aa	Known RBP	6.56	□□□□□ -1.36
RPN7	YPR108W	GFD1	Q04839	188 aa	Known RBP	6.56	□□□□□ -1.36
RPN7	YPR108W	YLR407W	Q06070	228 aa		6.56	□□□□□ -1.36
RPN7	YPR108W	CTT1	P06115	562 aa		6.55	□□□□□ -1.36
RPN7	YPR108W	PBS2	P08018	668 aa		6.55	□□□□□ -1.36
RPN7	YPR108W	PDR1	P12383	1068 aa		6.55	□□□□□ -1.36
RPN7	YPR108W	GBP2	P25555	427 aa	Known RBP RIP-Chip data	6.55	□□□□□ -1.36	not detected
RPN7	YPR108W	RPL8B	P29453	256 aa	Known RBP	6.55	□□□□□ -1.36
RPN7	YPR108W	KNS1	P32350	737 aa	Predicted RBP	6.55	□□□□□ -1.36
RPN7	YPR108W	SLA1	P32790	1244 aa		6.55	□□□□□ -1.36
RPN7	YPR108W	PTK1	P36002	662 aa	Predicted RBP	6.55	□□□□□ -1.36
RPN7	YPR108W	ENT3	P47160	408 aa		6.55	□□□□□ -1.36
RPN7	YPR108W	YPT11	P48559	417 aa		6.55	□□□□□ -1.36
RPN7	YPR108W	PIB2	P53191	635 aa		6.55	□□□□□ -1.36
RPN7	YPR108W	SNU71	P53207	620 aa	Known RBP	6.55	□□□□□ -1.36
RPN7	YPR108W	ENV11	P53246	860 aa		6.55	□□□□□ -1.36
RPN7	YPR108W	SEN54	Q02825	467 aa	Predicted RBP	6.55	□□□□□ -1.36
RPN7	YPR108W	KAR5	Q04746	504 aa		6.55	□□□□□ -1.36
RPN7	YPR108W	TOS4	Q06266	489 aa		6.55	□□□□□ -1.36
RPN7	YPR108W	CSC1	Q06538	782 aa		6.55	□□□□□ -1.36
RPN7	YPR108W	YCG1	Q06680	1035 aa		6.55	□□□□□ -1.36
RPN7	YPR108W	GYP1	Q08484	637 aa		6.55	□□□□□ -1.36

Retrieved 100 of 5,963 RNA–protein pairs in 42 ms