RNA–Protein interactions for RNA: YDR261C-D

YDR261C-D, Transcript of Retrotransposon TYA Gag and TYB Pol genes, yeast

Gene YDR261C-D, Length 4,815 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
YDR261C-D	YDR261C-D	SSE2	P32590	693 aa	Known RBP	4.89	□□□□□ -1.63
YDR261C-D	YDR261C-D	RFC1	P38630	861 aa	Known RBP	4.89	□□□□□ -1.63
YDR261C-D	YDR261C-D	BRO1	P48582	844 aa		4.89	□□□□□ -1.63
YDR261C-D	YDR261C-D	FIN1	Q03898	291 aa		4.89	□□□□□ -1.63
YDR261C-D	YDR261C-D	UTP13	Q05946	817 aa	Known RBP	4.89	□□□□□ -1.63
YDR261C-D	YDR261C-D	YCG1	Q06680	1035 aa		4.89	□□□□□ -1.63
YDR261C-D	YDR261C-D	RAD3	P06839	778 aa		4.89	□□□□□ -1.63
YDR261C-D	YDR261C-D	RRP43	P25359	394 aa	Predicted RBP	4.89	□□□□□ -1.63
YDR261C-D	YDR261C-D	SEC8	P32855	1065 aa		4.89	□□□□□ -1.63
YDR261C-D	YDR261C-D	MNR2	P35724	969 aa		4.89	□□□□□ -1.63
YDR261C-D	YDR261C-D	BEM4	P39011	633 aa		4.89	□□□□□ -1.63
YDR261C-D	YDR261C-D	RBL2	P48606	106 aa	Known RBP	4.89	□□□□□ -1.63
YDR261C-D	YDR261C-D	DCP2	P53550	970 aa	Known RBP	4.89	□□□□□ -1.63
YDR261C-D	YDR261C-D	YNL050C	P53952	270 aa		4.89	□□□□□ -1.63
YDR261C-D	YDR261C-D	PEX19	Q07418	342 aa		4.89	□□□□□ -1.63
YDR261C-D	YDR261C-D	RIO1	Q12196	484 aa	Known RBP	4.89	□□□□□ -1.63
YDR261C-D	YDR261C-D	NCA2	Q12374	616 aa		4.89	□□□□□ -1.63
YDR261C-D	YDR261C-D	SSP1	P38871	571 aa		4.89	□□□□□ -1.63
YDR261C-D	YDR261C-D	SAP185	P40856	1058 aa		4.89	□□□□□ -1.63
YDR261C-D	YDR261C-D	HFD1	Q04458	532 aa		4.89	□□□□□ -1.63
YDR261C-D	YDR261C-D	PAB1	P04147	577 aa	Known RBP RIP-Chip data	4.89	□□□□□ -1.63	not detected
YDR261C-D	YDR261C-D	RAD1	P06777	1100 aa		4.89	□□□□□ -1.63
YDR261C-D	YDR261C-D	CDC23	P16522	626 aa		4.89	□□□□□ -1.63
YDR261C-D	YDR261C-D	RIM101	P33400	625 aa		4.89	□□□□□ -1.63
YDR261C-D	YDR261C-D	CHZ1	P40019	153 aa	Predicted RBP	4.89	□□□□□ -1.63
YDR261C-D	YDR261C-D	MAS2	P11914	482 aa		4.88	□□□□□ -1.63
YDR261C-D	YDR261C-D	GCD2	P12754	651 aa	Predicted RBP	4.88	□□□□□ -1.63
YDR261C-D	YDR261C-D	KIP2	P28743	706 aa		4.88	□□□□□ -1.63
YDR261C-D	YDR261C-D	ATP3	P38077	311 aa	Known RBP	4.88	□□□□□ -1.63
YDR261C-D	YDR261C-D	PPX1	P38698	397 aa		4.88	□□□□□ -1.63
YDR261C-D	YDR261C-D	YHR078W	P38799	552 aa		4.88	□□□□□ -1.63
YDR261C-D	YDR261C-D	NUP82	P40368	713 aa		4.88	□□□□□ -1.63
YDR261C-D	YDR261C-D	YRB1	P41920	201 aa	Known RBP	4.88	□□□□□ -1.63
YDR261C-D	YDR261C-D	ATH1	P48016	1211 aa		4.88	□□□□□ -1.63
YDR261C-D	YDR261C-D	NUP84	P52891	726 aa		4.88	□□□□□ -1.63
YDR261C-D	YDR261C-D	KIP3	P53086	805 aa	Known RBP	4.88	□□□□□ -1.63
YDR261C-D	YDR261C-D	UBP3	Q01477	912 aa	Known RBP RIP-Chip data	4.88	□□□□□ -1.63	not detected
YDR261C-D	YDR261C-D	YMR196W	Q04336	1088 aa		4.88	□□□□□ -1.63
YDR261C-D	YDR261C-D	ADE13	Q05911	482 aa	Known RBP	4.88	□□□□□ -1.63
YDR261C-D	YDR261C-D	RPL5	P26321	297 aa	Known RBP	4.88	□□□□□ -1.63
YDR261C-D	YDR261C-D	YHR020W	P38708	688 aa	Known RBP	4.88	□□□□□ -1.63
YDR261C-D	YDR261C-D	BFA1	P47113	574 aa		4.88	□□□□□ -1.63
YDR261C-D	YDR261C-D	DIP5	P53388	608 aa		4.88	□□□□□ -1.63
YDR261C-D	YDR261C-D	KAP120	Q02932	1032 aa		4.88	□□□□□ -1.63
YDR261C-D	YDR261C-D	GDE1	Q02979	1223 aa		4.88	□□□□□ -1.63
YDR261C-D	YDR261C-D	SVL3	Q03088	825 aa	Known RBP	4.88	□□□□□ -1.63
YDR261C-D	YDR261C-D	RBS1	Q05672	457 aa	Known RBP	4.88	□□□□□ -1.63
YDR261C-D	YDR261C-D	YDL121C	Q07541	149 aa		4.88	□□□□□ -1.63
YDR261C-D	YDR261C-D	LOT6	Q07923	191 aa		4.88	□□□□□ -1.63
YDR261C-D	YDR261C-D	RPS5	P26783	225 aa	Known RBP	4.88	□□□□□ -1.63
YDR261C-D	YDR261C-D	FDC1	Q03034	503 aa		4.88	□□□□□ -1.63
YDR261C-D	YDR261C-D	MMR1	Q06324	491 aa		4.88	□□□□□ -1.63
YDR261C-D	YDR261C-D	TAL1	P15019	335 aa	Known RBP	4.88	□□□□□ -1.63
YDR261C-D	YDR261C-D	CLB2	P24869	491 aa		4.88	□□□□□ -1.63
YDR261C-D	YDR261C-D	MCD4	P36051	919 aa		4.88	□□□□□ -1.63
YDR261C-D	YDR261C-D	ALA1	P40825	983 aa	Known RBP	4.88	□□□□□ -1.63
YDR261C-D	YDR261C-D	MRS2	Q01926	470 aa		4.88	□□□□□ -1.63
YDR261C-D	YDR261C-D	KRE28	Q04431	385 aa		4.88	□□□□□ -1.63
YDR261C-D	YDR261C-D	YOR214C	Q12282	236 aa		4.88	□□□□□ -1.63
YDR261C-D	YDR261C-D	RVB2	Q12464	471 aa	Known RBP	4.88	□□□□□ -1.63
YDR261C-D	YDR261C-D	ATG11	Q12527	1178 aa		4.88	□□□□□ -1.63
YDR261C-D	YDR261C-D	PET494	P07390	489 aa	Predicted RBP	4.87	□□□□□ -1.63
YDR261C-D	YDR261C-D	SEC63	P14906	663 aa		4.87	□□□□□ -1.63
YDR261C-D	YDR261C-D	VPS1	P21576	704 aa	Known RBP	4.87	□□□□□ -1.63
YDR261C-D	YDR261C-D	CRM1	P30822	1084 aa	Known RBP	4.87	□□□□□ -1.63
YDR261C-D	YDR261C-D	CBF2	P32504	956 aa		4.87	□□□□□ -1.63
YDR261C-D	YDR261C-D	SLA2	P33338	968 aa		4.87	□□□□□ -1.63
YDR261C-D	YDR261C-D	DUR3	P33413	735 aa		4.87	□□□□□ -1.63
YDR261C-D	YDR261C-D	YKR018C	P36114	725 aa		4.87	□□□□□ -1.63
YDR261C-D	YDR261C-D	CNM67	P53865	581 aa	Known RBP	4.87	□□□□□ -1.63
YDR261C-D	YDR261C-D	YKU80	Q04437	629 aa		4.87	□□□□□ -1.63
YDR261C-D	YDR261C-D	DOM34	P33309	386 aa		4.87	□□□□□ -1.63
YDR261C-D	YDR261C-D	TRM5	P38793	499 aa		4.87	□□□□□ -1.63
YDR261C-D	YDR261C-D	ARB1	P40024	610 aa	Known RBP	4.87	□□□□□ -1.63
YDR261C-D	YDR261C-D	VID28	P40547	921 aa		4.87	□□□□□ -1.63
YDR261C-D	YDR261C-D	YFL066C	P43538	392 aa		4.87	□□□□□ -1.63
YDR261C-D	YDR261C-D	SSC1	P0CS90	654 aa	Known RBP	4.87	□□□□□ -1.63
YDR261C-D	YDR261C-D	SEC15	P22224	910 aa		4.87	□□□□□ -1.63
YDR261C-D	YDR261C-D	ROX1	P25042	368 aa		4.87	□□□□□ -1.63
YDR261C-D	YDR261C-D	YKR015C	P36111	568 aa		4.87	□□□□□ -1.63
YDR261C-D	YDR261C-D	CCT3	P39077	534 aa	Known RBP	4.87	□□□□□ -1.63
YDR261C-D	YDR261C-D	SSP120	P39931	234 aa	Known RBP	4.87	□□□□□ -1.63
YDR261C-D	YDR261C-D	FAP1	P53971	965 aa		4.87	□□□□□ -1.63
YDR261C-D	YDR261C-D	YML108W	Q03759	105 aa		4.87	□□□□□ -1.63
YDR261C-D	YDR261C-D	SYF1	Q04048	859 aa	Predicted RBP	4.87	□□□□□ -1.63
YDR261C-D	YDR261C-D	GSF2	Q04697	403 aa	Known RBP	4.87	□□□□□ -1.63
YDR261C-D	YDR261C-D	VPS36	Q06696	566 aa		4.87	□□□□□ -1.63
YDR261C-D	YDR261C-D	YOS9	Q99220	542 aa		4.87	□□□□□ -1.63
YDR261C-D	YDR261C-D	SSB1	P11484	613 aa	Known RBP	4.86	□□□□□ -1.63
YDR261C-D	YDR261C-D	GCN3	P14741	305 aa		4.86	□□□□□ -1.63
YDR261C-D	YDR261C-D	MCM3	P24279	971 aa	Known RBP	4.86	□□□□□ -1.63
YDR261C-D	YDR261C-D	GRR1	P24814	1151 aa		4.86	□□□□□ -1.63
YDR261C-D	YDR261C-D	RNP1	P32385	249 aa		4.86	□□□□□ -1.63
YDR261C-D	YDR261C-D	UBC6	P33296	250 aa	Predicted RBP	4.86	□□□□□ -1.63
YDR261C-D	YDR261C-D	SSB2	P40150	613 aa	Known RBP	4.86	□□□□□ -1.63
YDR261C-D	YDR261C-D	ESL1	P40456	1118 aa		4.86	□□□□□ -1.63
YDR261C-D	YDR261C-D	RET2	P43621	546 aa		4.86	□□□□□ -1.63
YDR261C-D	YDR261C-D	RPA34	P47006	233 aa	Predicted RBP	4.86	□□□□□ -1.63
YDR261C-D	YDR261C-D	RSC2	Q06488	889 aa		4.86	□□□□□ -1.63
YDR261C-D	YDR261C-D	REC107	P21651	314 aa		4.86	□□□□□ -1.63

Retrieved 100 of 5,963 RNA–protein pairs in 101 ms