RNA–Protein interactions for RNA: YDL230W

PTP1, Transcript of Phosphotyrosine-specific protein phosphatase, yeast

Gene PTP1, Length 1,008 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PTP1	YDL230W	RXT2	P38255	430 aa		13.98	□□□□□ -0.17
PTP1	YDL230W	PCI8	P40512	444 aa		13.98	□□□□□ -0.17
PTP1	YDL230W	CSC1	Q06538	782 aa		13.98	□□□□□ -0.17
PTP1	YDL230W	ARG82	P07250	355 aa		13.97	□□□□□ -0.17
PTP1	YDL230W	MYO5	Q04439	1219 aa	Known RBP	13.97	□□□□□ -0.17
PTP1	YDL230W	MET6	P05694	767 aa	Known RBP	13.96	□□□□□ -0.17
PTP1	YDL230W	ERT1	P38140	529 aa		13.96	□□□□□ -0.17
PTP1	YDL230W	WAR1	Q03631	944 aa		13.96	□□□□□ -0.17
PTP1	YDL230W	RNR3	P21672	869 aa	Known RBP	13.95	□□□□□ -0.18
PTP1	YDL230W	MFT1	P33441	392 aa	Known RBP	13.95	□□□□□ -0.18
PTP1	YDL230W	MNR2	P35724	969 aa		13.95	□□□□□ -0.18
PTP1	YDL230W	APL6	P46682	809 aa		13.95	□□□□□ -0.18
PTP1	YDL230W	PUS6	P53294	404 aa		13.95	□□□□□ -0.18
PTP1	YDL230W	GDE1	Q02979	1223 aa		13.95	□□□□□ -0.18
PTP1	YDL230W	PRP42	Q03776	544 aa	Known RBP	13.95	□□□□□ -0.18
PTP1	YDL230W	PTC5	Q12511	572 aa		13.95	□□□□□ -0.18
PTP1	YDL230W	PSY4	P38193	441 aa		13.94	□□□□□ -0.18
PTP1	YDL230W	EAF6	P47128	113 aa		13.94	□□□□□ -0.18
PTP1	YDL230W	PRI1	P10363	409 aa		13.93	□□□□□ -0.18
PTP1	YDL230W	RPS7A	P26786	190 aa	Known RBP	13.93	□□□□□ -0.18
PTP1	YDL230W	ALG2	P43636	503 aa		13.93	□□□□□ -0.18
PTP1	YDL230W	GIS4	Q04233	774 aa		13.93	□□□□□ -0.18
PTP1	YDL230W	EIS1	Q05050	843 aa	Known RBP	13.93	□□□□□ -0.18
PTP1	YDL230W	KEL3	Q08979	651 aa	Predicted RBP	13.93	□□□□□ -0.18
PTP1	YDL230W	GRX6	Q12438	231 aa		13.93	□□□□□ -0.18
PTP1	YDL230W	STI1	P15705	589 aa	Known RBP RIP-Chip data	13.92	□□□□□ -0.18	not detected
PTP1	YDL230W	EBP2	P36049	427 aa	Known RBP	13.92	□□□□□ -0.18
PTP1	YDL230W	CUE3	P53137	624 aa	Known RBP	13.92	□□□□□ -0.18
PTP1	YDL230W	RPT6	Q01939	405 aa	Known RBP	13.92	□□□□□ -0.18
PTP1	YDL230W	YDR341C	Q05506	607 aa	Known RBP	13.92	□□□□□ -0.18
PTP1	YDL230W	ESC2	Q06340	456 aa		13.92	□□□□□ -0.18
PTP1	YDL230W	ACE2	P21192	770 aa		13.91	□□□□□ -0.18
PTP1	YDL230W	ICL1	P28240	557 aa	Predicted RBP	13.91	□□□□□ -0.18
PTP1	YDL230W	YKL222C	P35995	705 aa		13.91	□□□□□ -0.18
PTP1	YDL230W	FAR11	P53917	953 aa		13.91	□□□□□ -0.18
PTP1	YDL230W	NBL1	Q3E7Y6	73 aa		13.91	□□□□□ -0.18
PTP1	YDL230W	FLO11	P08640	1367 aa		13.91	□□□□□ -0.18
PTP1	YDL230W	SAC6	P32599	642 aa	Known RBP	13.9	□□□□□ -0.18
PTP1	YDL230W	VPS8	P39702	1274 aa		13.9	□□□□□ -0.18
PTP1	YDL230W	TMA16	Q08687	178 aa		13.9	□□□□□ -0.18
PTP1	YDL230W	YKU70	P32807	602 aa		13.89	□□□□□ -0.19
PTP1	YDL230W	KIN4	Q01919	800 aa		13.89	□□□□□ -0.19
PTP1	YDL230W	MMR1	Q06324	491 aa		13.89	□□□□□ -0.19
PTP1	YDL230W	AFT2	Q08957	416 aa		13.89	□□□□□ -0.19
PTP1	YDL230W	ASF1	P32447	279 aa		13.88	□□□□□ -0.19
PTP1	YDL230W	TIF4632	P39936	914 aa	Known RBP	13.88	□□□□□ -0.19
PTP1	YDL230W	LYS14	P40971	790 aa		13.88	□□□□□ -0.19
PTP1	YDL230W	YGL138C	P53122	345 aa		13.88	□□□□□ -0.19
PTP1	YDL230W	NAF1	P53919	492 aa	Known RBP	13.88	□□□□□ -0.19
PTP1	YDL230W	GSC2	P40989	1895 aa		13.88	□□□□□ -0.19
PTP1	YDL230W	CIT1	P00890	479 aa		13.87	□□□□□ -0.19
PTP1	YDL230W	SRP54	P20424	541 aa	Known RBP	13.87	□□□□□ -0.19
PTP1	YDL230W	MCM3	P24279	971 aa	Known RBP	13.87	□□□□□ -0.19
PTP1	YDL230W	CDC15	P27636	974 aa		13.87	□□□□□ -0.19
PTP1	YDL230W	BMH1	P29311	267 aa	Known RBP	13.87	□□□□□ -0.19
PTP1	YDL230W	RPL8B	P29453	256 aa	Known RBP	13.87	□□□□□ -0.19
PTP1	YDL230W	STU2	P46675	888 aa		13.87	□□□□□ -0.19
PTP1	YDL230W	DPL1	Q05567	589 aa		13.87	□□□□□ -0.19
PTP1	YDL230W	PSR2	Q07949	397 aa		13.87	□□□□□ -0.19
PTP1	YDL230W	RRG1	Q12167	365 aa	Predicted RBP	13.87	□□□□□ -0.19
PTP1	YDL230W	CEX1	Q12453	761 aa		13.87	□□□□□ -0.19
PTP1	YDL230W	TFG2	P41896	400 aa	Predicted RBP	13.86	□□□□□ -0.19
PTP1	YDL230W	YOR296W	Q08748	1289 aa		13.86	□□□□□ -0.19
PTP1	YDL230W	RPL22A	P05749	121 aa	Known RBP	13.85	□□□□□ -0.19
PTP1	YDL230W	MYO1	P08964	1928 aa		13.85	□□□□□ -0.19
PTP1	YDL230W	AFG2	P32794	780 aa		13.84	□□□□□ -0.19
PTP1	YDL230W	CAB3	P36076	571 aa		13.84	□□□□□ -0.19
PTP1	YDL230W	SMD2	Q06217	110 aa	Known RBP	13.84	□□□□□ -0.19
PTP1	YDL230W	DSE3	Q08729	430 aa		13.84	□□□□□ -0.19
PTP1	YDL230W	HIS4	P00815	799 aa	Known RBP	13.83	□□□□□ -0.2
PTP1	YDL230W	CTT1	P06115	562 aa		13.83	□□□□□ -0.2
PTP1	YDL230W	ALG1	P16661	449 aa		13.83	□□□□□ -0.2
PTP1	YDL230W	CHS3	P29465	1165 aa		13.83	□□□□□ -0.2
PTP1	YDL230W	STR2	P47164	639 aa		13.83	□□□□□ -0.2
PTP1	YDL230W	TCB2	P48231	1178 aa		13.83	□□□□□ -0.2
PTP1	YDL230W	ACK1	Q07622	623 aa	Predicted RBP	13.83	□□□□□ -0.2
PTP1	YDL230W	TIP41	Q12199	356 aa		13.83	□□□□□ -0.2
PTP1	YDL230W	ADE17	P38009	592 aa	Known RBP	13.82	□□□□□ -0.2
PTP1	YDL230W	FOL1	P53848	824 aa		13.82	□□□□□ -0.2
PTP1	YDL230W	MDM1	Q01846	1127 aa		13.82	□□□□□ -0.2
PTP1	YDL230W	VPS30	Q02948	557 aa		13.82	□□□□□ -0.2
PTP1	YDL230W	TRS120	Q04183	1289 aa		13.82	□□□□□ -0.2
PTP1	YDL230W	APL4	Q12028	832 aa		13.82	□□□□□ -0.2
PTP1	YDL230W	TOP1	P04786	769 aa		13.81	□□□□□ -0.2
PTP1	YDL230W	MAK11	P20484	414 aa	Known RBP	13.81	□□□□□ -0.2
PTP1	YDL230W	PRE8	P23639	250 aa		13.81	□□□□□ -0.2
PTP1	YDL230W	TOM71	P38825	639 aa	Known RBP	13.81	□□□□□ -0.2
PTP1	YDL230W	MGA2	P40578	1113 aa		13.81	□□□□□ -0.2
PTP1	YDL230W	OSW7	P43611	510 aa		13.81	□□□□□ -0.2
PTP1	YDL230W	HCR1	Q05775	265 aa	Known RBP	13.81	□□□□□ -0.2
PTP1	YDL230W	PDC1	P06169	563 aa	Known RBP	13.8	□□□□□ -0.2
PTP1	YDL230W	NUC1	P08466	329 aa		13.8	□□□□□ -0.2
PTP1	YDL230W	SPB4	P25808	606 aa	Predicted RBP	13.8	□□□□□ -0.2
PTP1	YDL230W	STT3	P39007	718 aa	Known RBP	13.8	□□□□□ -0.2
PTP1	YDL230W	TPM2	P40414	161 aa		13.8	□□□□□ -0.2
PTP1	YDL230W	LSC2	P53312	427 aa		13.8	□□□□□ -0.2
PTP1	YDL230W	VPS75	P53853	264 aa		13.8	□□□□□ -0.2
PTP1	YDL230W	GFD1	Q04839	188 aa	Known RBP	13.8	□□□□□ -0.2
PTP1	YDL230W	PCL8	Q08966	492 aa		13.8	□□□□□ -0.2
PTP1	YDL230W	DIP2	Q12220	943 aa	Predicted RBP	13.8	□□□□□ -0.2

Retrieved 100 of 5,963 RNA–protein pairs in 131.3 ms