RNA–Protein interactions for RNA: YNL288W

CAF40, Transcript of Component of the CCR4-NOT transcriptional complex, yeastyeast

Gene CAF40, Length 1,122 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CAF40YNL288W TOS1P38288 455 aa7.65□□□□□ -1.18
CAF40YNL288W HST3P53687 447 aa7.65□□□□□ -1.18
CAF40YNL288W NYV1Q12255 253 aa7.65□□□□□ -1.18
CAF40YNL288W SUI2P20459 304 aaKnown RBP7.64□□□□□ -1.19
CAF40YNL288W ASH1P34233 588 aa7.64□□□□□ -1.19
CAF40YNL288W YRB30P53107 440 aaPredicted RBP7.64□□□□□ -1.19
CAF40YNL288W GCR2Q01722 534 aa7.64□□□□□ -1.19
CAF40YNL288W PKC1P24583 1151 aa7.63□□□□□ -1.19
CAF40YNL288W BRE2P43132 505 aa7.63□□□□□ -1.19
CAF40YNL288W BUD27P43573 796 aaKnown RBP RIP-Chip data7.63□□□□□ -1.19not detected
CAF40YNL288W YOL057WQ08225 711 aa7.63□□□□□ -1.19
CAF40YNL288W AFT1P22149 690 aa7.62□□□□□ -1.19
CAF40YNL288W FIG4P42837 879 aa7.62□□□□□ -1.19
CAF40YNL288W TEC1P18412 486 aa7.61□□□□□ -1.19
CAF40YNL288W SER1P33330 395 aaKnown RBP7.61□□□□□ -1.19
CAF40YNL288W YBR287WP38355 427 aa7.61□□□□□ -1.19
CAF40YNL288W RAT1Q02792 1006 aaKnown RBP7.61□□□□□ -1.19
CAF40YNL288W SRT1Q03175 343 aa7.61□□□□□ -1.19
CAF40YNL288W NAF1P53919 492 aaKnown RBP7.6□□□□□ -1.19
CAF40YNL288W DNM1P54861 757 aa7.6□□□□□ -1.19
CAF40YNL288W RIX7Q07844 837 aaKnown RBP7.6□□□□□ -1.19
CAF40YNL288W LPD1P09624 499 aaKnown RBP7.59□□□□□ -1.19
CAF40YNL288W PRS1P32895 427 aaKnown RBP7.59□□□□□ -1.19
CAF40YNL288W YGL082WP53155 381 aa7.59□□□□□ -1.19
CAF40YNL288W SPT5P27692 1063 aaKnown RBP7.58□□□□□ -1.2
CAF40YNL288W MRT4P33201 236 aaKnown RBP7.58□□□□□ -1.2
CAF40YNL288W VPS64Q03944 604 aa7.58□□□□□ -1.2
CAF40YNL288W YDR306CQ06640 478 aa7.58□□□□□ -1.2
CAF40YNL288W DIB1Q06819 143 aaPredicted RBP7.58□□□□□ -1.2
CAF40YNL288W YPR204WQ08995 1032 aa7.58□□□□□ -1.2
CAF40YNL288W RVB2Q12464 471 aaKnown RBP7.58□□□□□ -1.2
CAF40YNL288W SSK22P25390 1331 aaPredicted RBP7.57□□□□□ -1.2
CAF40YNL288W MSN5P52918 1224 aa7.57□□□□□ -1.2
CAF40YNL288W ZDS2P54786 942 aa7.57□□□□□ -1.2
CAF40YNL288W NAB6Q03735 1134 aaKnown RBP RIP-Chip data7.57□□□□□ -1.2not detected
CAF40YNL288W MRP7P12687 371 aa7.56□□□□□ -1.2
CAF40YNL288W GUT2P32191 649 aa7.56□□□□□ -1.2
CAF40YNL288W APL2P36000 726 aaPredicted RBP7.56□□□□□ -1.2
CAF40YNL288W YJR008WP47085 338 aa7.56□□□□□ -1.2
CAF40YNL288W CTI6Q08923 506 aa7.56□□□□□ -1.2
CAF40YNL288W SWI1P09547 1314 aa7.55□□□□□ -1.2
CAF40YNL288W YKL222CP35995 705 aa7.55□□□□□ -1.2
CAF40YNL288W ERT1P38140 529 aa7.55□□□□□ -1.2
CAF40YNL288W PFF1P38244 976 aa7.55□□□□□ -1.2
CAF40YNL288W CTT1P06115 562 aa7.54□□□□□ -1.2
CAF40YNL288W SSA1P10591 642 aaKnown RBP7.54□□□□□ -1.2
CAF40YNL288W NUP133P36161 1157 aa7.54□□□□□ -1.2
CAF40YNL288W YPP1P46951 817 aa7.54□□□□□ -1.2
CAF40YNL288W YJL007CP47080 104 aa7.54□□□□□ -1.2
CAF40YNL288W EAF6P47128 113 aa7.54□□□□□ -1.2
CAF40YNL288W PKH1Q03407 766 aa7.54□□□□□ -1.2
CAF40YNL288W BDF2Q07442 638 aa7.54□□□□□ -1.2
CAF40YNL288W HAT1Q12341 374 aa7.54□□□□□ -1.2
CAF40YNL288W YJR115WP47152 169 aa7.53□□□□□ -1.2
CAF40YNL288W STE20Q03497 939 aaKnown RBP7.53□□□□□ -1.2
CAF40YNL288W YPR084WQ06821 456 aa7.53□□□□□ -1.2
CAF40YNL288W NOP8Q08287 484 aaPredicted RBP7.53□□□□□ -1.2
CAF40YNL288W YDJ1P25491 409 aaKnown RBP7.52□□□□□ -1.21
CAF40YNL288W YER156CP40093 338 aaKnown RBP7.52□□□□□ -1.21
CAF40YNL288W EMW1P42842 904 aaKnown RBP7.52□□□□□ -1.21
CAF40YNL288W IRC3Q06683 689 aa7.52□□□□□ -1.21
CAF40YNL288W RAD2P07276 1031 aa7.51□□□□□ -1.21
CAF40YNL288W BIO2P32451 375 aa7.51□□□□□ -1.21
CAF40YNL288W YIL092WP40497 633 aa7.51□□□□□ -1.21
CAF40YNL288W DMA2P53924 522 aa7.51□□□□□ -1.21
CAF40YNL288W ERO1Q03103 563 aa7.51□□□□□ -1.21
CAF40YNL288W SRF1Q12516 437 aa7.51□□□□□ -1.21
CAF40YNL288W RAD24P32641 659 aa7.5□□□□□ -1.21
CAF40YNL288W CWH41P53008 833 aa7.5□□□□□ -1.21
CAF40YNL288W YNL108CP53929 270 aa7.5□□□□□ -1.21
CAF40YNL288W SAC3P46674 1301 aa7.5□□□□□ -1.21
CAF40YNL288W RPS19AP07280 144 aaKnown RBP7.49□□□□□ -1.21
CAF40YNL288W RPS19BP07281 144 aaPredicted RBP7.49□□□□□ -1.21
CAF40YNL288W DAL5P15365 543 aa7.49□□□□□ -1.21
CAF40YNL288W SMY1P32364 656 aaKnown RBP7.49□□□□□ -1.21
CAF40YNL288W BOI2P39969 1040 aa7.49□□□□□ -1.21
CAF40YNL288W YGR122WP53272 402 aa7.49□□□□□ -1.21
CAF40YNL288W KIN4Q01919 800 aa7.49□□□□□ -1.21
CAF40YNL288W SYF1Q04048 859 aaPredicted RBP7.49□□□□□ -1.21
CAF40YNL288W CSI1Q04368 295 aa7.49□□□□□ -1.21
CAF40YNL288W FRA1Q07825 749 aa7.49□□□□□ -1.21
CAF40YNL288W MCM16Q12262 181 aa7.49□□□□□ -1.21
CAF40YNL288W RPS9BP05755 195 aaKnown RBP7.48□□□□□ -1.21
CAF40YNL288W MKS1P34072 584 aa7.48□□□□□ -1.21
CAF40YNL288W EMP47P43555 445 aa7.48□□□□□ -1.21
CAF40YNL288W ITC1P53125 1264 aa7.48□□□□□ -1.21
CAF40YNL288W UBP16Q02863 499 aa7.48□□□□□ -1.21
CAF40YNL288W FCP1Q03254 732 aa7.48□□□□□ -1.21
CAF40YNL288W MTC5Q03897 1148 aa7.48□□□□□ -1.21
CAF40YNL288W SUP35P05453 685 aaKnown RBP7.47□□□□□ -1.21
CAF40YNL288W SUP45P12385 437 aaKnown RBP7.47□□□□□ -1.21
CAF40YNL288W ISF1P32488 338 aa7.47□□□□□ -1.21
CAF40YNL288W BIM1P40013 344 aa7.47□□□□□ -1.21
CAF40YNL288W PTK2P47116 818 aaKnown RBP7.47□□□□□ -1.21
CAF40YNL288W PSH1Q12161 406 aa7.47□□□□□ -1.21
CAF40YNL288W GRX6Q12438 231 aa7.47□□□□□ -1.21
CAF40YNL288W UBP12P39538 1254 aa7.46□□□□□ -1.22
CAF40YNL288W SWC3P31376 625 aa7.45□□□□□ -1.22
CAF40YNL288W ATG20Q07528 640 aa7.45□□□□□ -1.22
CAF40YNL288W PMD1P32634 1753 aa7.45□□□□□ -1.22
Retrieved 100 of 5,963 RNA–protein pairs in 15.9 ms