RNA–Protein interactions for RNA: YLR117C

CLF1, Transcript of Member of the NineTeen Complex (NTC), yeast

Gene CLF1, Length 2,064 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CLF1	YLR117C	KRE28	Q04431	385 aa		5.32	□□□□□ -1.56
CLF1	YLR117C	SGD1	Q06132	899 aa		5.32	□□□□□ -1.56
CLF1	YLR117C	IMH1	Q06704	911 aa	Known RBP	5.32	□□□□□ -1.56
CLF1	YLR117C	PDR18	P53756	1333 aa		5.32	□□□□□ -1.56
CLF1	YLR117C	PMR1	P13586	950 aa		5.32	□□□□□ -1.56
CLF1	YLR117C	SEC66	P33754	206 aa		5.32	□□□□□ -1.56
CLF1	YLR117C	NAB3	P38996	802 aa	Known RBP RIP-Chip data	5.32	□□□□□ -1.56	not detected
CLF1	YLR117C	CCT4	P39078	528 aa	Known RBP	5.32	□□□□□ -1.56
CLF1	YLR117C	RSM7	P47150	247 aa		5.32	□□□□□ -1.56
CLF1	YLR117C	ILM1	P47155	203 aa		5.32	□□□□□ -1.56
CLF1	YLR117C	ADE12	P80210	433 aa	Known RBP	5.32	□□□□□ -1.56
CLF1	YLR117C	TIM11	P81449	96 aa	Predicted RBP	5.32	□□□□□ -1.56
CLF1	YLR117C	RSA3	Q05942	220 aa	Known RBP	5.32	□□□□□ -1.56
CLF1	YLR117C	STE23	Q06010	1027 aa		5.32	□□□□□ -1.56
CLF1	YLR117C	SFH1	Q06168	426 aa		5.32	□□□□□ -1.56
CLF1	YLR117C	SDH5	Q08230	162 aa		5.32	□□□□□ -1.56
CLF1	YLR117C	CTI6	Q08923	506 aa		5.32	□□□□□ -1.56
CLF1	YLR117C	YAH1	Q12184	172 aa	Known RBP	5.32	□□□□□ -1.56
CLF1	YLR117C	RUD3	Q12234	484 aa	Known RBP	5.32	□□□□□ -1.56
CLF1	YLR117C	MCM16	Q12262	181 aa		5.32	□□□□□ -1.56
CLF1	YLR117C	LSO1	Q3E827	93 aa		5.32	□□□□□ -1.56
CLF1	YLR117C	DUR1,2	P32528	1835 aa	Known RBP	5.31	□□□□□ -1.56
CLF1	YLR117C	SAC3	P46674	1301 aa		5.31	□□□□□ -1.56
CLF1	YLR117C	RPO26	P20435	155 aa		5.31	□□□□□ -1.56
CLF1	YLR117C	DAL7	P21826	554 aa		5.31	□□□□□ -1.56
CLF1	YLR117C	MBR1	P23493	339 aa		5.31	□□□□□ -1.56
CLF1	YLR117C	PIM1	P36775	1133 aa		5.31	□□□□□ -1.56
CLF1	YLR117C	EIS1	Q05050	843 aa	Known RBP	5.31	□□□□□ -1.56
CLF1	YLR117C	CFT2	Q12102	859 aa	Predicted RBP	5.31	□□□□□ -1.56
CLF1	YLR117C	VPS5	Q92331	675 aa		5.31	□□□□□ -1.56
CLF1	YLR117C	DNF3	Q12674	1656 aa		5.3	□□□□□ -1.56
CLF1	YLR117C	THR4	P16120	514 aa	Known RBP	5.3	□□□□□ -1.56
CLF1	YLR117C	GAL11	P19659	1081 aa		5.3	□□□□□ -1.56
CLF1	YLR117C	PRE10	P21242	288 aa	Known RBP RIP-Chip data	5.3	□□□□□ -1.56	not detected
CLF1	YLR117C	UBC1	P21734	215 aa	Known RBP	5.3	□□□□□ -1.56
CLF1	YLR117C	CLB4	P24871	460 aa		5.3	□□□□□ -1.56
CLF1	YLR117C	SIS1	P25294	352 aa	Known RBP	5.3	□□□□□ -1.56
CLF1	YLR117C	ECM32	P32644	1121 aa	Known RBP	5.3	□□□□□ -1.56
CLF1	YLR117C	TIF3	P34167	436 aa	Known RBP	5.3	□□□□□ -1.56
CLF1	YLR117C	SUM1	P46676	1062 aa		5.3	□□□□□ -1.56
CLF1	YLR117C	YGL242C	P53066	181 aa		5.3	□□□□□ -1.56
CLF1	YLR117C	SEC5	P89102	971 aa		5.3	□□□□□ -1.56
CLF1	YLR117C	RTT109	Q07794	436 aa		5.3	□□□□□ -1.56
CLF1	YLR117C	PSR1	Q07800	427 aa		5.3	□□□□□ -1.56
CLF1	YLR117C	YOR223W	Q12015	292 aa		5.3	□□□□□ -1.56
CLF1	YLR117C	IOC2	Q12072	812 aa		5.3	□□□□□ -1.56
CLF1	YLR117C	DPB3	P27344	201 aa		5.3	□□□□□ -1.56
CLF1	YLR117C	SWC3	P31376	625 aa		5.3	□□□□□ -1.56
CLF1	YLR117C	LHS1	P36016	881 aa		5.3	□□□□□ -1.56
CLF1	YLR117C	YKR018C	P36114	725 aa		5.3	□□□□□ -1.56
CLF1	YLR117C	YSW1	P38280	609 aa		5.3	□□□□□ -1.56
CLF1	YLR117C	REI1	P38344	393 aa	Predicted RBP	5.3	□□□□□ -1.56
CLF1	YLR117C	ERC1	P38767	581 aa		5.3	□□□□□ -1.56
CLF1	YLR117C	YFR006W	P43590	535 aa		5.3	□□□□□ -1.56
CLF1	YLR117C	DPL1	Q05567	589 aa		5.3	□□□□□ -1.56
CLF1	YLR117C	NUP192	P47054	1683 aa		5.29	□□□□□ -1.56
CLF1	YLR117C	USO1	P25386	1790 aa		5.29	□□□□□ -1.56
CLF1	YLR117C	BUD14	P27637	709 aa		5.29	□□□□□ -1.56
CLF1	YLR117C	EFB1	P32471	206 aa	Known RBP	5.29	□□□□□ -1.56
CLF1	YLR117C	PDB1	P32473	366 aa	Known RBP	5.29	□□□□□ -1.56
CLF1	YLR117C	PCH2	P38126	564 aa		5.29	□□□□□ -1.56
CLF1	YLR117C	PET100	P38958	111 aa		5.29	□□□□□ -1.56
CLF1	YLR117C	MAL13	P53338	473 aa		5.29	□□□□□ -1.56
CLF1	YLR117C	NCS2	P53923	493 aa	Predicted RBP	5.29	□□□□□ -1.56
CLF1	YLR117C	ASI1	P54074	624 aa		5.29	□□□□□ -1.56
CLF1	YLR117C	BET4	Q00618	327 aa		5.29	□□□□□ -1.56
CLF1	YLR117C	TSR1	Q07381	788 aa	Known RBP	5.29	□□□□□ -1.56
CLF1	YLR117C	CDC10	P25342	322 aa	Known RBP	5.28	□□□□□ -1.56
CLF1	YLR117C	CDC48	P25694	835 aa	Known RBP	5.28	□□□□□ -1.56
CLF1	YLR117C	TFC3	P34111	1160 aa		5.28	□□□□□ -1.56
CLF1	YLR117C	RPC37	P36121	282 aa		5.28	□□□□□ -1.56
CLF1	YLR117C	ECM4	P36156	370 aa		5.28	□□□□□ -1.56
CLF1	YLR117C	IPL1	P38991	367 aa		5.28	□□□□□ -1.56
CLF1	YLR117C	VPS8	P39702	1274 aa		5.28	□□□□□ -1.56
CLF1	YLR117C	VID28	P40547	921 aa		5.28	□□□□□ -1.56
CLF1	YLR117C	HUL4	P40985	892 aa		5.28	□□□□□ -1.56
CLF1	YLR117C	VPS53	P47061	822 aa		5.28	□□□□□ -1.56
CLF1	YLR117C	ORM1	P53224	222 aa		5.28	□□□□□ -1.56
CLF1	YLR117C	HST2	P53686	357 aa		5.28	□□□□□ -1.56
CLF1	YLR117C	FAR8	Q05040	523 aa		5.28	□□□□□ -1.56
CLF1	YLR117C	AI2	P03876	854 aa		5.28	□□□□□ -1.56
CLF1	YLR117C	GCD2	P12754	651 aa	Predicted RBP	5.28	□□□□□ -1.56
CLF1	YLR117C	RPL5	P26321	297 aa	Known RBP	5.28	□□□□□ -1.56
CLF1	YLR117C	MET4	P32389	672 aa		5.28	□□□□□ -1.56
CLF1	YLR117C	PRX1	P34227	261 aa	Known RBP	5.28	□□□□□ -1.56
CLF1	YLR117C	TYS1	P36421	394 aa	Known RBP	5.28	□□□□□ -1.56
CLF1	YLR117C	MTR4	P47047	1073 aa	Known RBP	5.28	□□□□□ -1.56
CLF1	YLR117C	YJR079W	P47126	109 aa		5.28	□□□□□ -1.56
CLF1	YLR117C	CCM1	P48237	864 aa	Predicted RBP	5.28	□□□□□ -1.56
CLF1	YLR117C	APT1	P49435	187 aa	Known RBP	5.28	□□□□□ -1.56
CLF1	YLR117C	MFM1	Q02783	413 aa		5.28	□□□□□ -1.56
CLF1	YLR117C	ATG23	Q06671	453 aa		5.28	□□□□□ -1.56
CLF1	YLR117C	YCG1	Q06680	1035 aa		5.28	□□□□□ -1.56
CLF1	YLR117C	NOC3	Q07896	663 aa	Predicted RBP	5.28	□□□□□ -1.56
CLF1	YLR117C	APL4	Q12028	832 aa		5.28	□□□□□ -1.56
CLF1	YLR117C	CHS5	Q12114	671 aa	Known RBP	5.28	□□□□□ -1.56
CLF1	YLR117C	RRP5	Q05022	1729 aa	Known RBP	5.27	□□□□□ -1.57
CLF1	YLR117C	RPL19A	P0CX82	189 aa	Known RBP	5.27	□□□□□ -1.57
CLF1	YLR117C	RPL19B	P0CX83	189 aa	Predicted RBP	5.27	□□□□□ -1.57
CLF1	YLR117C	TUP1	P16649	713 aa		5.27	□□□□□ -1.57

Retrieved 100 of 5,963 RNA–protein pairs in 73.2 ms