RNA–Protein interactions for RNA: YDR235W

PRP42, Transcript of U1 snRNP protein involved in splicing, yeastyeast

Gene PRP42, Length 1,635 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRP42YDR235W BIO5P53744 561 aaKnown RBP3.15□□□□□ -1.91
PRP42YDR235W SPO71Q03868 1245 aa3.15□□□□□ -1.91
PRP42YDR235W SOG2Q08817 791 aa3.15□□□□□ -1.91
PRP42YDR235W ISW1P38144 1129 aa3.14□□□□□ -1.91
PRP42YDR235W MMM1P41800 426 aa3.14□□□□□ -1.91
PRP42YDR235W MRPL33P20084 86 aa3.13□□□□□ -1.91
PRP42YDR235W RTG2P32608 588 aaKnown RBP3.13□□□□□ -1.91
PRP42YDR235W LDH1P38139 375 aa3.13□□□□□ -1.91
PRP42YDR235W CWH41P53008 833 aa3.13□□□□□ -1.91
PRP42YDR235W KIP3P53086 805 aaKnown RBP3.13□□□□□ -1.91
PRP42YDR235W ERS1P17261 260 aa3.12□□□□□ -1.91
PRP42YDR235W VAN1P23642 535 aa3.12□□□□□ -1.91
PRP42YDR235W WHI3P34761 661 aaKnown RBP3.12□□□□□ -1.91
PRP42YDR235W FLR1P38124 548 aa3.12□□□□□ -1.91
PRP42YDR235W CIT3P43635 486 aa3.12□□□□□ -1.91
PRP42YDR235W ROM1P53046 1155 aa3.12□□□□□ -1.91
PRP42YDR235W CAB1Q04430 367 aa3.12□□□□□ -1.91
PRP42YDR235W TFA2P36145 328 aa3.11□□□□□ -1.91
PRP42YDR235W RPN1P38764 993 aaKnown RBP3.11□□□□□ -1.91
PRP42YDR235W PRP6P19735 899 aaPredicted RBP3.11□□□□□ -1.91
PRP42YDR235W RCM1P53972 490 aa3.11□□□□□ -1.91
PRP42YDR235W ALD3P54114 506 aa3.11□□□□□ -1.91
PRP42YDR235W MSH6Q03834 1242 aa3.11□□□□□ -1.91
PRP42YDR235W TIF1P10081 395 aaKnown RBP3.1□□□□□ -1.91
PRP42YDR235W NEO1P40527 1151 aa3.1□□□□□ -1.91
PRP42YDR235W FOX2Q02207 900 aaKnown RBP3.1□□□□□ -1.91
PRP42YDR235W TAD3Q9URQ3 322 aa3.1□□□□□ -1.91
PRP42YDR235W RPL34BP40525 121 aaKnown RBP3.09□□□□□ -1.91
PRP42YDR235W YOR059CQ08448 450 aaKnown RBP3.09□□□□□ -1.91
PRP42YDR235W TRS33Q99394 268 aa3.09□□□□□ -1.91
PRP42YDR235W GAL2P13181 574 aa3.08□□□□□ -1.92
PRP42YDR235W SUV3P32580 737 aa3.08□□□□□ -1.92
PRP42YDR235W BOI1P38041 980 aaKnown RBP3.08□□□□□ -1.92
PRP42YDR235W BIM1P40013 344 aa3.08□□□□□ -1.92
PRP42YDR235W ATG32P40458 529 aa3.08□□□□□ -1.92
PRP42YDR235W FAR11P53917 953 aa3.08□□□□□ -1.92
PRP42YDR235W EMG1Q06287 252 aaKnown RBP3.08□□□□□ -1.92
PRP42YDR235W FUS1P11710 512 aa3.08□□□□□ -1.92
PRP42YDR235W MSN1P22148 382 aa3.08□□□□□ -1.92
PRP42YDR235W ADP1P25371 1049 aa3.08□□□□□ -1.92
PRP42YDR235W YBR287WP38355 427 aa3.08□□□□□ -1.92
PRP42YDR235W GSF2Q04697 403 aaKnown RBP3.08□□□□□ -1.92
PRP42YDR235W YOR223WQ12015 292 aa3.08□□□□□ -1.92
PRP42YDR235W GPT2P36148 743 aa3.07□□□□□ -1.92
PRP42YDR235W YBR197CP38306 217 aa3.06□□□□□ -1.92
PRP42YDR235W HAS1Q03532 505 aaKnown RBP3.06□□□□□ -1.92
PRP42YDR235W YMR074CQ04773 145 aa3.06□□□□□ -1.92
PRP42YDR235W LEU3P08638 886 aa3.05□□□□□ -1.92
PRP42YDR235W AIM3P38266 947 aaKnown RBP3.05□□□□□ -1.92
PRP42YDR235W AIM46P38885 310 aa3.05□□□□□ -1.92
PRP42YDR235W OYE3P41816 400 aaPredicted RBP3.05□□□□□ -1.92
PRP42YDR235W YJR124CP47159 448 aa3.05□□□□□ -1.92
PRP42YDR235W ORC3P54790 616 aa3.05□□□□□ -1.92
PRP42YDR235W NFS1P25374 497 aa3.04□□□□□ -1.92
PRP42YDR235W YPT53P36019 220 aa3.04□□□□□ -1.92
PRP42YDR235W FIR1P40020 876 aa3.04□□□□□ -1.92
PRP42YDR235W SSY1Q03770 852 aa3.04□□□□□ -1.92
PRP42YDR235W ISC10P32645 267 aa3.03□□□□□ -1.92
PRP42YDR235W RIM8P53179 542 aa3.03□□□□□ -1.92
PRP42YDR235W DOT1Q04089 582 aaKnown RBP3.03□□□□□ -1.92
PRP42YDR235W SIS2P36024 562 aa3.02□□□□□ -1.93
PRP42YDR235W ABZ1P37254 787 aaPredicted RBP3.02□□□□□ -1.93
PRP42YDR235W TRE1Q08919 783 aa3.02□□□□□ -1.93
PRP42YDR235W FET4P40988 552 aa3.01□□□□□ -1.93
PRP42YDR235W MRPL22P53881 309 aa3.01□□□□□ -1.93
PRP42YDR235W YLL054CQ12244 843 aa3.01□□□□□ -1.93
PRP42YDR235W HVG1P0CE11 249 aa3.01□□□□□ -1.93
PRP42YDR235W RPS4AP0CX35 261 aaKnown RBP3.01□□□□□ -1.93
PRP42YDR235W RPS4BP0CX36 261 aaKnown RBP3.01□□□□□ -1.93
PRP42YDR235W HXT8P40886 569 aa3.01□□□□□ -1.93
PRP42YDR235W GLO4Q12320 285 aa3.01□□□□□ -1.93
PRP42YDR235W LPX1Q12405 387 aaKnown RBP3.01□□□□□ -1.93
PRP42YDR235W TOD6P34219 525 aa3□□□□□ -1.93
PRP42YDR235W PNS1Q12412 539 aa3□□□□□ -1.93
PRP42YDR235W TUB2P02557 457 aaKnown RBP2.99□□□□□ -1.93
PRP42YDR235W ALD4P46367 519 aaKnown RBP2.99□□□□□ -1.93
PRP42YDR235W ECM23Q02710 187 aa2.99□□□□□ -1.93
PRP42YDR235W SOD2P00447 233 aa2.98□□□□□ -1.93
PRP42YDR235W PRO1P32264 428 aa2.98□□□□□ -1.93
PRP42YDR235W PEX7P39108 375 aa2.98□□□□□ -1.93
PRP42YDR235W RGD2P43556 714 aa2.98□□□□□ -1.93
PRP42YDR235W YDL177CQ12257 170 aa2.97□□□□□ -1.93
PRP42YDR235W TGL4P36165 910 aa2.97□□□□□ -1.93
PRP42YDR235W SHM2P37291 469 aaKnown RBP2.97□□□□□ -1.93
PRP42YDR235W UBX7P38349 436 aa2.97□□□□□ -1.93
PRP42YDR235W NTA1P40354 457 aa2.97□□□□□ -1.93
PRP42YDR235W EAR1Q03212 550 aa2.97□□□□□ -1.93
PRP42YDR235W YVC1Q12324 675 aa2.97□□□□□ -1.93
PRP42YDR235W MSH4P40965 878 aaPredicted RBP2.96□□□□□ -1.94
PRP42YDR235W ALT1P52893 592 aa2.96□□□□□ -1.94
PRP42YDR235W CLU1Q03690 1277 aaKnown RBP2.96□□□□□ -1.94
PRP42YDR235W YPL277CQ08989 487 aa2.96□□□□□ -1.94
PRP42YDR235W ETP1P38748 585 aaKnown RBP2.95□□□□□ -1.94
PRP42YDR235W PTC7P38797 343 aa2.95□□□□□ -1.94
PRP42YDR235W GCV1P48015 400 aa2.95□□□□□ -1.94
PRP42YDR235W YLR358CO13565 187 aa2.94□□□□□ -1.94
PRP42YDR235W RPS13P05756 151 aaKnown RBP2.94□□□□□ -1.94
PRP42YDR235W PUN1Q06991 263 aa2.94□□□□□ -1.94
PRP42YDR235W TIF6Q12522 245 aaKnown RBP2.94□□□□□ -1.94
PRP42YDR235W CTS1P29029 562 aa2.93□□□□□ -1.94
Retrieved 100 of 5,963 RNA–protein pairs in 15.3 ms