RNA–Protein interactions for RNA: YAR002W

NUP60, Transcript of FG-nucleoporin component of central core of the nuclear pore complex, yeast

Gene NUP60, Length 1,620 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NUP60	YAR002W	CDC3	P32457	520 aa	Known RBP	4.28	□□□□□ -1.72
NUP60	YAR002W	DLD3	P39976	496 aa	Known RBP	4.28	□□□□□ -1.72
NUP60	YAR002W	SLX8	P40072	274 aa		4.28	□□□□□ -1.72
NUP60	YAR002W	USO1	P25386	1790 aa		4.28	□□□□□ -1.72
NUP60	YAR002W	SWI5	P08153	709 aa		4.28	□□□□□ -1.72
NUP60	YAR002W	RPS6A	P0CX37	236 aa	Known RBP	4.28	□□□□□ -1.72
NUP60	YAR002W	RPS6B	P0CX38	236 aa	Predicted RBP	4.28	□□□□□ -1.72
NUP60	YAR002W	GRX4	P32642	244 aa		4.28	□□□□□ -1.72
NUP60	YAR002W	RTR1	P40084	226 aa	Predicted RBP	4.28	□□□□□ -1.72
NUP60	YAR002W	MPP10	P47083	593 aa	Known RBP	4.28	□□□□□ -1.72
NUP60	YAR002W	YRB30	P53107	440 aa	Predicted RBP	4.28	□□□□□ -1.72
NUP60	YAR002W	HIM1	Q06674	414 aa		4.28	□□□□□ -1.72
NUP60	YAR002W	ARG82	P07250	355 aa		4.27	□□□□□ -1.73
NUP60	YAR002W	SUI2	P20459	304 aa	Known RBP	4.27	□□□□□ -1.73
NUP60	YAR002W	FUN12	P39730	1002 aa	Known RBP	4.27	□□□□□ -1.73
NUP60	YAR002W	PRP43	P53131	767 aa	Known RBP	4.27	□□□□□ -1.73
NUP60	YAR002W	TRS33	Q99394	268 aa		4.27	□□□□□ -1.73
NUP60	YAR002W	CYT1	P07143	309 aa		4.26	□□□□□ -1.73
NUP60	YAR002W	RPS24A	P0CX31	135 aa	Known RBP	4.26	□□□□□ -1.73
NUP60	YAR002W	RPS24B	P0CX32	135 aa	Known RBP	4.26	□□□□□ -1.73
NUP60	YAR002W	UBP1	P25037	809 aa		4.26	□□□□□ -1.73
NUP60	YAR002W	PAP2	P53632	584 aa	Known RBP	4.26	□□□□□ -1.73
NUP60	YAR002W	CWC15	Q03772	175 aa	Known RBP	4.26	□□□□□ -1.73
NUP60	YAR002W	SRF1	Q12516	437 aa		4.26	□□□□□ -1.73
NUP60	YAR002W	PRD1	P25375	712 aa		4.25	□□□□□ -1.73
NUP60	YAR002W	CWH41	P53008	833 aa		4.25	□□□□□ -1.73
NUP60	YAR002W	PUN1	Q06991	263 aa		4.25	□□□□□ -1.73
NUP60	YAR002W	RPO41	P13433	1351 aa	Known RBP	4.25	□□□□□ -1.73
NUP60	YAR002W	SRS2	P12954	1174 aa		4.24	□□□□□ -1.73
NUP60	YAR002W	THI12	P42883	340 aa		4.24	□□□□□ -1.73
NUP60	YAR002W	AAD14	P42884	376 aa		4.24	□□□□□ -1.73
NUP60	YAR002W	THI5	P43534	340 aa		4.24	□□□□□ -1.73
NUP60	YAR002W	SAP155	P43612	1002 aa		4.24	□□□□□ -1.73
NUP60	YAR002W	PTK2	P47116	818 aa	Known RBP	4.24	□□□□□ -1.73
NUP60	YAR002W	YJR115W	P47152	169 aa		4.24	□□□□□ -1.73
NUP60	YAR002W	THI11	P47183	340 aa		4.24	□□□□□ -1.73
NUP60	YAR002W	THI22	Q06490	572 aa		4.24	□□□□□ -1.73
NUP60	YAR002W	THI13	Q07748	340 aa		4.24	□□□□□ -1.73
NUP60	YAR002W	NGR1	P32831	672 aa	Known RBP	4.24	□□□□□ -1.73
NUP60	YAR002W	SUM1	P46676	1062 aa		4.24	□□□□□ -1.73
NUP60	YAR002W	NAB6	Q03735	1134 aa	Known RBP RIP-Chip data	4.24	□□□□□ -1.73	not detected
NUP60	YAR002W	FPR3	P38911	411 aa	Known RBP	4.23	□□□□□ -1.73
NUP60	YAR002W	UTP7	P40055	554 aa	Known RBP	4.23	□□□□□ -1.73
NUP60	YAR002W	HEF3	P53978	1044 aa	Known RBP	4.23	□□□□□ -1.73
NUP60	YAR002W	PNP1	Q05788	311 aa		4.23	□□□□□ -1.73
NUP60	YAR002W	MCM1	P11746	286 aa		4.22	□□□□□ -1.73
NUP60	YAR002W	NUP85	P46673	744 aa		4.22	□□□□□ -1.73
NUP60	YAR002W	YRF1-2	P40105	1681 aa		4.22	□□□□□ -1.73
NUP60	YAR002W	TY4B-H	P0C2J7	1802 aa		4.22	□□□□□ -1.73
NUP60	YAR002W	TY4B-J	P47024	1803 aa		4.22	□□□□□ -1.73
NUP60	YAR002W	AKL1	P38080	1108 aa	Known RBP	4.21	□□□□□ -1.73
NUP60	YAR002W	TPS3	P38426	1054 aa	Known RBP	4.21	□□□□□ -1.73
NUP60	YAR002W	ALA1	P40825	983 aa	Known RBP	4.21	□□□□□ -1.73
NUP60	YAR002W	YML020W	Q03722	664 aa		4.21	□□□□□ -1.73
NUP60	YAR002W	YPQ2	Q06328	317 aa		4.21	□□□□□ -1.73
NUP60	YAR002W	RTT109	Q07794	436 aa		4.21	□□□□□ -1.73
NUP60	YAR002W	HAT1	Q12341	374 aa		4.21	□□□□□ -1.73
NUP60	YAR002W	SIR4	P11978	1358 aa		4.21	□□□□□ -1.74
NUP60	YAR002W	RAD2	P07276	1031 aa		4.21	□□□□□ -1.74
NUP60	YAR002W	MET22	P32179	357 aa		4.21	□□□□□ -1.74
NUP60	YAR002W	RRN6	P32786	894 aa		4.21	□□□□□ -1.74
NUP60	YAR002W	MSN5	P52918	1224 aa		4.21	□□□□□ -1.74
NUP60	YAR002W	LSC2	P53312	427 aa		4.21	□□□□□ -1.74
NUP60	YAR002W	KAR5	Q04746	504 aa		4.21	□□□□□ -1.74
NUP60	YAR002W	YRF1-4	O13559	1382 aa		4.21	□□□□□ -1.74
NUP60	YAR002W	APC1	P53886	1748 aa		4.2	□□□□□ -1.74
NUP60	YAR002W	FUR4	P05316	633 aa	Known RBP	4.2	□□□□□ -1.74
NUP60	YAR002W	SUV3	P32580	737 aa		4.2	□□□□□ -1.74
NUP60	YAR002W	DLD1	P32891	587 aa		4.2	□□□□□ -1.74
NUP60	YAR002W	SLD2	P34252	453 aa		4.2	□□□□□ -1.74
NUP60	YAR002W	SSN3	P39073	555 aa		4.2	□□□□□ -1.74
NUP60	YAR002W	YIL092W	P40497	633 aa		4.2	□□□□□ -1.74
NUP60	YAR002W	BUD27	P43573	796 aa	Known RBP RIP-Chip data	4.2	□□□□□ -1.74	not detected
NUP60	YAR002W	DAL5	P15365	543 aa		4.19	□□□□□ -1.74
NUP60	YAR002W	PRP5	P21372	849 aa	Predicted RBP	4.19	□□□□□ -1.74
NUP60	YAR002W	SSF1	P38789	453 aa	Predicted RBP	4.19	□□□□□ -1.74
NUP60	YAR002W	VTC4	P47075	721 aa		4.19	□□□□□ -1.74
NUP60	YAR002W	YJR098C	P47139	656 aa		4.19	□□□□□ -1.74
NUP60	YAR002W	DSD1	P53095	428 aa		4.19	□□□□□ -1.74
NUP60	YAR002W	YLR346C	Q06139	101 aa		4.19	□□□□□ -1.74
NUP60	YAR002W	RRP5	Q05022	1729 aa	Known RBP	4.19	□□□□□ -1.74
NUP60	YAR002W	RPC31	P17890	251 aa		4.18	□□□□□ -1.74
NUP60	YAR002W	PRP45	P28004	379 aa	Predicted RBP	4.18	□□□□□ -1.74
NUP60	YAR002W	DAL1	P32375	460 aa		4.18	□□□□□ -1.74
NUP60	YAR002W	SCD5	P34758	872 aa		4.18	□□□□□ -1.74
NUP60	YAR002W	AHP1	P38013	176 aa	Known RBP	4.18	□□□□□ -1.74
NUP60	YAR002W	YBR197C	P38306	217 aa		4.18	□□□□□ -1.74
NUP60	YAR002W	YNL050C	P53952	270 aa		4.18	□□□□□ -1.74
NUP60	YAR002W	NOP8	Q08287	484 aa	Predicted RBP	4.18	□□□□□ -1.74
NUP60	YAR002W	YIL177C	P40434	1758 aa		4.18	□□□□□ -1.74
NUP60	YAR002W	YJL225C	P40889	1758 aa		4.18	□□□□□ -1.74
NUP60	YAR002W	HXT5	P38695	592 aa		4.17	□□□□□ -1.74
NUP60	YAR002W	UBP2	Q01476	1272 aa		4.17	□□□□□ -1.74
NUP60	YAR002W	SLM3	Q12093	417 aa		4.17	□□□□□ -1.74
NUP60	YAR002W	YBL113C	Q7M4S9	792 aa		4.17	□□□□□ -1.74
NUP60	YAR002W	HSP104	P31539	908 aa	Known RBP	4.17	□□□□□ -1.74
NUP60	YAR002W	BOL3	P39724	118 aa		4.17	□□□□□ -1.74
NUP60	YAR002W	MAM1	P40065	302 aa		4.17	□□□□□ -1.74
NUP60	YAR002W	JJJ2	P46997	583 aa		4.17	□□□□□ -1.74
NUP60	YAR002W	POL32	P47110	350 aa		4.17	□□□□□ -1.74

Retrieved 100 of 5,963 RNA–protein pairs in 15.5 ms