RNA–Protein interactions for RNA: YAL040C

CLN3, Transcript of G1 cyclin involved in cell cycle progression, yeast

Gene CLN3, Length 1,743 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CLN3	YAL040C	MLF3	P32047	452 aa		3.25	□□□□□ -1.89
CLN3	YAL040C	MET10	P39692	1035 aa		3.25	□□□□□ -1.89
CLN3	YAL040C	YNL165W	P53891	406 aa		3.25	□□□□□ -1.89
CLN3	YAL040C	IQG1	Q12280	1495 aa		3.25	□□□□□ -1.89
CLN3	YAL040C	LTE1	P07866	1435 aa		3.25	□□□□□ -1.89
CLN3	YAL040C	YSP2	Q06681	1438 aa		3.25	□□□□□ -1.89
CLN3	YAL040C	HAP4	P14064	554 aa		3.24	□□□□□ -1.89
CLN3	YAL040C	HEH2	Q03281	663 aa		3.24	□□□□□ -1.89
CLN3	YAL040C	GAS4	Q08271	471 aa		3.24	□□□□□ -1.89
CLN3	YAL040C	Q0182	Q9ZZW1	134 aa		3.24	□□□□□ -1.89
CLN3	YAL040C	GCN2	P15442	1659 aa		3.24	□□□□□ -1.89
CLN3	YAL040C	SRB8	P25648	1427 aa		3.24	□□□□□ -1.89
CLN3	YAL040C	UBP1	P25037	809 aa		3.24	□□□□□ -1.89
CLN3	YAL040C	KTR7	P40504	517 aa		3.24	□□□□□ -1.89
CLN3	YAL040C	UTP4	Q06679	776 aa	Known RBP	3.24	□□□□□ -1.89
CLN3	YAL040C	YDR215C	Q12240	137 aa		3.24	□□□□□ -1.89
CLN3	YAL040C	AIM44	Q99299	758 aa		3.24	□□□□□ -1.89
CLN3	YAL040C	SEC7	P11075	2009 aa	Known RBP	3.23	□□□□□ -1.89
CLN3	YAL040C	SCD5	P34758	872 aa		3.23	□□□□□ -1.89
CLN3	YAL040C	MSC7	P38694	644 aa		3.23	□□□□□ -1.89
CLN3	YAL040C	ACS2	P52910	683 aa	Known RBP	3.23	□□□□□ -1.89
CLN3	YAL040C	NRD1	P53617	575 aa	Known RBP RIP-Chip data	3.23	□□□□□ -1.89	not detected
CLN3	YAL040C	VMR1	P38735	1592 aa		3.23	□□□□□ -1.89
CLN3	YAL040C	YOR093C	Q12275	1648 aa		3.22	□□□□□ -1.89
CLN3	YAL040C	YCK2	P23292	546 aa	Known RBP	3.22	□□□□□ -1.89
CLN3	YAL040C	TAT1	P38085	619 aa		3.22	□□□□□ -1.89
CLN3	YAL040C	MTO1	P53070	669 aa		3.22	□□□□□ -1.89
CLN3	YAL040C	NCL1	P38205	684 aa	Known RBP	3.22	□□□□□ -1.89
CLN3	YAL040C	TPS3	P38426	1054 aa	Known RBP	3.21	□□□□□ -1.9
CLN3	YAL040C	SLN1	P39928	1220 aa	Predicted RBP	3.21	□□□□□ -1.9
CLN3	YAL040C	SKP1	P52286	194 aa		3.21	□□□□□ -1.9
CLN3	YAL040C	NHA1	Q99271	985 aa		3.21	□□□□□ -1.9
CLN3	YAL040C	DRS2	P39524	1355 aa		3.21	□□□□□ -1.9
CLN3	YAL040C	DNF2	Q12675	1612 aa		3.21	□□□□□ -1.9
CLN3	YAL040C	GAL2	P13181	574 aa		3.2	□□□□□ -1.9
CLN3	YAL040C	VAN1	P23642	535 aa		3.2	□□□□□ -1.9
CLN3	YAL040C	KAP122	P32767	1081 aa		3.2	□□□□□ -1.9
CLN3	YAL040C	ALG14	P38242	237 aa		3.2	□□□□□ -1.9
CLN3	YAL040C	PRK1	P40494	810 aa		3.2	□□□□□ -1.9
CLN3	YAL040C	CWH41	P53008	833 aa		3.2	□□□□□ -1.9
CLN3	YAL040C	NAP1	P25293	417 aa	Known RBP	3.19	□□□□□ -1.9
CLN3	YAL040C	NAB2	P32505	525 aa	Known RBP RIP-Chip data	3.19	□□□□□ -1.9	not detected
CLN3	YAL040C	NGR1	P32831	672 aa	Known RBP	3.19	□□□□□ -1.9
CLN3	YAL040C	AMN1	P38285	549 aa	Predicted RBP	3.19	□□□□□ -1.9
CLN3	YAL040C	HXT5	P38695	592 aa		3.19	□□□□□ -1.9
CLN3	YAL040C	LSB6	P42951	607 aa		3.19	□□□□□ -1.9
CLN3	YAL040C	NUP188	P52593	1655 aa	Known RBP	3.19	□□□□□ -1.9
CLN3	YAL040C	PDR5	P33302	1511 aa	Known RBP	3.19	□□□□□ -1.9
CLN3	YAL040C	BNR1	P40450	1375 aa		3.19	□□□□□ -1.9
CLN3	YAL040C	PGM2	P37012	569 aa	Known RBP	3.19	□□□□□ -1.9
CLN3	YAL040C	PRY1	P47032	299 aa		3.19	□□□□□ -1.9
CLN3	YAL040C	ROM1	P53046	1155 aa		3.19	□□□□□ -1.9
CLN3	YAL040C	CUS1	Q02554	436 aa	Predicted RBP	3.19	□□□□□ -1.9
CLN3	YAL040C	TRS33	Q99394	268 aa		3.19	□□□□□ -1.9
CLN3	YAL040C	TRM3	Q07527	1436 aa		3.18	□□□□□ -1.9
CLN3	YAL040C	APM2	P38700	605 aa		3.18	□□□□□ -1.9
CLN3	YAL040C	ORC1	P54784	914 aa	Predicted RBP	3.18	□□□□□ -1.9
CLN3	YAL040C	GIS4	Q04233	774 aa		3.18	□□□□□ -1.9
CLN3	YAL040C	MCA1	Q08601	432 aa		3.18	□□□□□ -1.9
CLN3	YAL040C	MMS1	Q06211	1407 aa		3.17	□□□□□ -1.9
CLN3	YAL040C	TGL4	P36165	910 aa		3.17	□□□□□ -1.9
CLN3	YAL040C	YPL034W	Q03083	165 aa		3.17	□□□□□ -1.9
CLN3	YAL040C	PDR11	P40550	1411 aa		3.17	□□□□□ -1.9
CLN3	YAL040C	IML1	P47170	1584 aa		3.17	□□□□□ -1.9
CLN3	YAL040C	RPC31	P17890	251 aa		3.16	□□□□□ -1.9
CLN3	YAL040C	QDR2	P40474	542 aa		3.16	□□□□□ -1.9
CLN3	YAL040C	BUD21	Q08492	214 aa	Predicted RBP	3.16	□□□□□ -1.9
CLN3	YAL040C	NUP192	P47054	1683 aa		3.16	□□□□□ -1.9
CLN3	YAL040C	NAR1	P23503	491 aa	Known RBP	3.16	□□□□□ -1.9
CLN3	YAL040C	TTI1	P36097	1038 aa		3.16	□□□□□ -1.9
CLN3	YAL040C	BUD9	P53226	547 aa		3.16	□□□□□ -1.9
CLN3	YAL040C	DYS1	P38791	387 aa		3.15	□□□□□ -1.91
CLN3	YAL040C	YNR040W	P53736	256 aa		3.15	□□□□□ -1.91
CLN3	YAL040C	ECM23	Q02710	187 aa		3.15	□□□□□ -1.91
CLN3	YAL040C	DNF3	Q12674	1656 aa		3.15	□□□□□ -1.91
CLN3	YAL040C	AI3	P03877	415 aa		3.14	□□□□□ -1.91
CLN3	YAL040C	MAC1	P35192	417 aa		3.14	□□□□□ -1.91
CLN3	YAL040C	YER156C	P40093	338 aa	Known RBP	3.14	□□□□□ -1.91
CLN3	YAL040C	FOX2	Q02207	900 aa	Known RBP	3.14	□□□□□ -1.91
CLN3	YAL040C	CAB1	Q04430	367 aa		3.14	□□□□□ -1.91
CLN3	YAL040C	NOP8	Q08287	484 aa	Predicted RBP	3.14	□□□□□ -1.91
CLN3	YAL040C	YOR296W	Q08748	1289 aa		3.14	□□□□□ -1.91
CLN3	YAL040C	IDI1	P15496	288 aa		3.13	□□□□□ -1.91
CLN3	YAL040C	MRPL33	P20084	86 aa		3.13	□□□□□ -1.91
CLN3	YAL040C	UBX7	P38349	436 aa		3.13	□□□□□ -1.91
CLN3	YAL040C	RSC2	Q06488	889 aa		3.13	□□□□□ -1.91
CLN3	YAL040C	SLP1	Q12232	587 aa		3.13	□□□□□ -1.91
CLN3	YAL040C	SAC7	P17121	654 aa		3.13	□□□□□ -1.91
CLN3	YAL040C	VMA3	P25515	160 aa		3.13	□□□□□ -1.91
CLN3	YAL040C	SUV3	P32580	737 aa		3.13	□□□□□ -1.91
CLN3	YAL040C	SFA1	P32771	386 aa		3.13	□□□□□ -1.91
CLN3	YAL040C	LDH1	P38139	375 aa		3.13	□□□□□ -1.91
CLN3	YAL040C	RRM3	P38766	723 aa		3.13	□□□□□ -1.91
CLN3	YAL040C	ITC1	P53125	1264 aa		3.13	□□□□□ -1.91
CLN3	YAL040C	GIP1	P38229	639 aa		3.12	□□□□□ -1.91
CLN3	YAL040C	YML020W	Q03722	664 aa		3.12	□□□□□ -1.91
CLN3	YAL040C	IOC4	Q04213	475 aa		3.12	□□□□□ -1.91
CLN3	YAL040C	USO1	P25386	1790 aa		3.12	□□□□□ -1.91
CLN3	YAL040C	COQ2	P32378	372 aa		3.11	□□□□□ -1.91
CLN3	YAL040C	YBR197C	P38306	217 aa		3.11	□□□□□ -1.91

Retrieved 100 of 5,963 RNA–protein pairs in 72.4 ms