RNA–Protein interactions for RNA: Q0140

VAR1, Transcript of Mitochondrial ribosomal protein of the small subunit, yeast

Gene VAR1, Length 1,197 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VAR1	Q0140	TFA2	P36145	328 aa		8.36	□□□□□ -1.07
VAR1	Q0140	ELG1	Q12050	791 aa		8.36	□□□□□ -1.07
VAR1	Q0140	ERS1	P17261	260 aa		8.35	□□□□□ -1.07
VAR1	Q0140	BIO5	P53744	561 aa	Known RBP	8.35	□□□□□ -1.07
VAR1	Q0140	KIP3	P53086	805 aa	Known RBP	8.34	□□□□□ -1.07
VAR1	Q0140	SOG2	Q08817	791 aa		8.34	□□□□□ -1.07
VAR1	Q0140	MRPL33	P20084	86 aa		8.33	□□□□□ -1.08
VAR1	Q0140	ROM1	P53046	1155 aa		8.32	□□□□□ -1.08
VAR1	Q0140	WHI3	P34761	661 aa	Known RBP	8.31	□□□□□ -1.08
VAR1	Q0140	ISW1	P38144	1129 aa		8.31	□□□□□ -1.08
VAR1	Q0140	SPO71	Q03868	1245 aa		8.31	□□□□□ -1.08
VAR1	Q0140	MMM1	P41800	426 aa		8.3	□□□□□ -1.08
VAR1	Q0140	ALD3	P54114	506 aa		8.29	□□□□□ -1.08
VAR1	Q0140	NSI1	Q12457	570 aa		8.29	□□□□□ -1.08
VAR1	Q0140	RTG2	P32608	588 aa	Known RBP	8.28	□□□□□ -1.08
VAR1	Q0140	PRP6	P19735	899 aa	Predicted RBP	8.26	□□□□□ -1.09
VAR1	Q0140	LDH1	P38139	375 aa		8.26	□□□□□ -1.09
VAR1	Q0140	CIT3	P43635	486 aa		8.26	□□□□□ -1.09
VAR1	Q0140	FOX2	Q02207	900 aa	Known RBP	8.26	□□□□□ -1.09
VAR1	Q0140	TAD3	Q9URQ3	322 aa		8.26	□□□□□ -1.09
VAR1	Q0140	SUV3	P32580	737 aa		8.25	□□□□□ -1.09
VAR1	Q0140	TIF1	P10081	395 aa	Known RBP	8.24	□□□□□ -1.09
VAR1	Q0140	VAN1	P23642	535 aa		8.23	□□□□□ -1.09
VAR1	Q0140	CWH41	P53008	833 aa		8.23	□□□□□ -1.09
VAR1	Q0140	EMG1	Q06287	252 aa	Known RBP	8.23	□□□□□ -1.09
VAR1	Q0140	BOI1	P38041	980 aa	Known RBP	8.21	□□□□□ -1.1
VAR1	Q0140	ATG32	P40458	529 aa		8.21	□□□□□ -1.1
VAR1	Q0140	NEO1	P40527	1151 aa		8.21	□□□□□ -1.1
VAR1	Q0140	MSH6	Q03834	1242 aa		8.21	□□□□□ -1.1
VAR1	Q0140	MSN1	P22148	382 aa		8.2	□□□□□ -1.1
VAR1	Q0140	RCM1	P53972	490 aa		8.2	□□□□□ -1.1
VAR1	Q0140	FUS1	P11710	512 aa		8.19	□□□□□ -1.1
VAR1	Q0140	BIM1	P40013	344 aa		8.18	□□□□□ -1.1
VAR1	Q0140	OYE3	P41816	400 aa	Predicted RBP	8.18	□□□□□ -1.1
VAR1	Q0140	RPN1	P38764	993 aa	Known RBP	8.17	□□□□□ -1.1
VAR1	Q0140	GAL2	P13181	574 aa		8.15	□□□□□ -1.1
VAR1	Q0140	GPT2	P36148	743 aa		8.15	□□□□□ -1.1
VAR1	Q0140	AIM3	P38266	947 aa	Known RBP	8.15	□□□□□ -1.1
VAR1	Q0140	TRS33	Q99394	268 aa		8.15	□□□□□ -1.1
VAR1	Q0140	YBR197C	P38306	217 aa		8.14	□□□□□ -1.11
VAR1	Q0140	HAS1	Q03532	505 aa	Known RBP	8.14	□□□□□ -1.11
VAR1	Q0140	YOR059C	Q08448	450 aa	Known RBP	8.14	□□□□□ -1.11
VAR1	Q0140	GSF2	Q04697	403 aa	Known RBP	8.13	□□□□□ -1.11
VAR1	Q0140	YOR223W	Q12015	292 aa		8.13	□□□□□ -1.11
VAR1	Q0140	YPT53	P36019	220 aa		8.12	□□□□□ -1.11
VAR1	Q0140	YJR124C	P47159	448 aa		8.12	□□□□□ -1.11
VAR1	Q0140	FAR11	P53917	953 aa		8.12	□□□□□ -1.11
VAR1	Q0140	ORC3	P54790	616 aa		8.11	□□□□□ -1.11
VAR1	Q0140	ADP1	P25371	1049 aa		8.1	□□□□□ -1.11
VAR1	Q0140	RQC2	Q12532	1038 aa	Known RBP	8.1	□□□□□ -1.11
VAR1	Q0140	NFS1	P25374	497 aa		8.09	□□□□□ -1.11
VAR1	Q0140	RPL34B	P40525	121 aa	Known RBP	8.08	□□□□□ -1.12
VAR1	Q0140	AIM46	P38885	310 aa		8.07	□□□□□ -1.12
VAR1	Q0140	YMR074C	Q04773	145 aa		8.07	□□□□□ -1.12
VAR1	Q0140	HVG1	P0CE11	249 aa		8.06	□□□□□ -1.12
VAR1	Q0140	SSY1	Q03770	852 aa		8.05	□□□□□ -1.12
VAR1	Q0140	LEU3	P08638	886 aa		8.04	□□□□□ -1.12
VAR1	Q0140	ISC10	P32645	267 aa		8.04	□□□□□ -1.12
VAR1	Q0140	ABZ1	P37254	787 aa	Predicted RBP	8.03	□□□□□ -1.12
VAR1	Q0140	RIM8	P53179	542 aa		8.03	□□□□□ -1.12
VAR1	Q0140	LPX1	Q12405	387 aa	Known RBP	8.03	□□□□□ -1.12
VAR1	Q0140	MRPL22	P53881	309 aa		8.01	□□□□□ -1.13
VAR1	Q0140	DOT1	Q04089	582 aa	Known RBP	8.01	□□□□□ -1.13
VAR1	Q0140	YBR287W	P38355	427 aa		8	□□□□□ -1.13
VAR1	Q0140	FIR1	P40020	876 aa		7.99	□□□□□ -1.13
VAR1	Q0140	GLO4	Q12320	285 aa		7.99	□□□□□ -1.13
VAR1	Q0140	FET4	P40988	552 aa		7.98	□□□□□ -1.13
VAR1	Q0140	TRE1	Q08919	783 aa		7.98	□□□□□ -1.13
VAR1	Q0140	YDL177C	Q12257	170 aa		7.98	□□□□□ -1.13
VAR1	Q0140	TOD6	P34219	525 aa		7.97	□□□□□ -1.13
VAR1	Q0140	RPS4A	P0CX35	261 aa	Known RBP	7.96	□□□□□ -1.14
VAR1	Q0140	RPS4B	P0CX36	261 aa	Known RBP	7.96	□□□□□ -1.14
VAR1	Q0140	RGD2	P43556	714 aa		7.95	□□□□□ -1.14
VAR1	Q0140	ALD4	P46367	519 aa	Known RBP	7.94	□□□□□ -1.14
VAR1	Q0140	EAR1	Q03212	550 aa		7.94	□□□□□ -1.14
VAR1	Q0140	PNS1	Q12412	539 aa		7.94	□□□□□ -1.14
VAR1	Q0140	TUB2	P02557	457 aa	Known RBP	7.93	□□□□□ -1.14
VAR1	Q0140	PRO1	P32264	428 aa		7.93	□□□□□ -1.14
VAR1	Q0140	SIS2	P36024	562 aa		7.93	□□□□□ -1.14
VAR1	Q0140	PEX7	P39108	375 aa		7.93	□□□□□ -1.14
VAR1	Q0140	HXT8	P40886	569 aa		7.93	□□□□□ -1.14
VAR1	Q0140	ECM23	Q02710	187 aa		7.91	□□□□□ -1.14
VAR1	Q0140	SOD2	P00447	233 aa		7.9	□□□□□ -1.14
VAR1	Q0140	YPL277C	Q08989	487 aa		7.89	□□□□□ -1.15
VAR1	Q0140	YVC1	Q12324	675 aa		7.89	□□□□□ -1.15
VAR1	Q0140	SHM2	P37291	469 aa	Known RBP	7.88	□□□□□ -1.15
VAR1	Q0140	CLU1	Q03690	1277 aa	Known RBP	7.88	□□□□□ -1.15
VAR1	Q0140	ALT1	P52893	592 aa		7.87	□□□□□ -1.15
VAR1	Q0140	YLL054C	Q12244	843 aa		7.87	□□□□□ -1.15
VAR1	Q0140	TGL4	P36165	910 aa		7.86	□□□□□ -1.15
VAR1	Q0140	MSH4	P40965	878 aa	Predicted RBP	7.86	□□□□□ -1.15
VAR1	Q0140	CTS1	P29029	562 aa		7.85	□□□□□ -1.15
VAR1	Q0140	ETP1	P38748	585 aa	Known RBP	7.85	□□□□□ -1.15
VAR1	Q0140	PTC7	P38797	343 aa		7.85	□□□□□ -1.15
VAR1	Q0140	UBX7	P38349	436 aa		7.84	□□□□□ -1.15
VAR1	Q0140	KTR2	P33550	425 aa		7.83	□□□□□ -1.16
VAR1	Q0140	NTA1	P40354	457 aa		7.83	□□□□□ -1.16
VAR1	Q0140	GCV1	P48015	400 aa		7.83	□□□□□ -1.16
VAR1	Q0140	RPS13	P05756	151 aa	Known RBP	7.82	□□□□□ -1.16
VAR1	Q0140	PYC2	P32327	1180 aa	Known RBP	7.82	□□□□□ -1.16

Retrieved 100 of 5,963 RNA–protein pairs in 17.8 ms