RNA–Protein interactions for RNA: YMR185W

RTP1, Transcript of Protein required for the nuclear import and biogenesis of RNA pol II, yeastyeast

Gene RTP1, Length 2,946 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RTP1YMR185W JJJ3P47138 172 aa2.41□□□□□ -2.02
RTP1YMR185W GDB1Q06625 1536 aa2.41□□□□□ -2.02
RTP1YMR185W SPT7P35177 1332 aa2.4□□□□□ -2.02
RTP1YMR185W MMS1Q06211 1407 aa2.4□□□□□ -2.02
RTP1YMR185W PRS1P32895 427 aaKnown RBP2.4□□□□□ -2.02
RTP1YMR185W YNR014WP53719 212 aa2.4□□□□□ -2.02
RTP1YMR185W NAF1P53919 492 aaKnown RBP2.4□□□□□ -2.02
RTP1YMR185W YPR084WQ06821 456 aa2.4□□□□□ -2.02
RTP1YMR185W MHP1P43638 1398 aa2.4□□□□□ -2.03
RTP1YMR185W KRE33P53914 1056 aaKnown RBP2.4□□□□□ -2.03
RTP1YMR185W MCM16Q12262 181 aa2.4□□□□□ -2.03
RTP1YMR185W CHC1P22137 1653 aaKnown RBP2.4□□□□□ -2.03
RTP1YMR185W ATG3P40344 310 aa2.39□□□□□ -2.03
RTP1YMR185W ADE12P80210 433 aaKnown RBP2.39□□□□□ -2.03
RTP1YMR185W FRA1Q07825 749 aa2.39□□□□□ -2.03
RTP1YMR185W SPO14P36126 1683 aa2.39□□□□□ -2.03
RTP1YMR185W UBP15P50101 1230 aa2.39□□□□□ -2.03
RTP1YMR185W YPR053CQ6Q5F3 151 aa2.39□□□□□ -2.03
RTP1YMR185W GUA1P38625 525 aaKnown RBP2.38□□□□□ -2.03
RTP1YMR185W SOH1P38633 127 aa2.38□□□□□ -2.03
RTP1YMR185W MRX12P47084 519 aa2.38□□□□□ -2.03
RTP1YMR185W IOC4Q04213 475 aa2.38□□□□□ -2.03
RTP1YMR185W VTC4P47075 721 aa2.38□□□□□ -2.03
RTP1YMR185W BUD3P25558 1636 aa2.37□□□□□ -2.03
RTP1YMR185W SPT5P27692 1063 aaKnown RBP2.37□□□□□ -2.03
RTP1YMR185W YRF1-1P0CX20 1796 aa2.37□□□□□ -2.03
RTP1YMR185W YRF1-5P0CX21 1796 aa2.37□□□□□ -2.03
RTP1YMR185W YRF1-8P0CX22 1796 aa2.37□□□□□ -2.03
RTP1YMR185W YDJ1P25491 409 aaKnown RBP2.37□□□□□ -2.03
RTP1YMR185W DAL1P32375 460 aa2.37□□□□□ -2.03
RTP1YMR185W CSE4P36012 229 aa2.37□□□□□ -2.03
RTP1YMR185W RPN1P38764 993 aaKnown RBP2.37□□□□□ -2.03
RTP1YMR185W TFB3Q03290 321 aa2.37□□□□□ -2.03
RTP1YMR185W DIT1P21623 536 aa2.36□□□□□ -2.03
RTP1YMR185W FPS1P23900 669 aa2.36□□□□□ -2.03
RTP1YMR185W SBE2P42223 864 aaKnown RBP2.36□□□□□ -2.03
RTP1YMR185W YPP1P46951 817 aa2.36□□□□□ -2.03
RTP1YMR185W YSP2Q06681 1438 aa2.36□□□□□ -2.03
RTP1YMR185W YTA6P40328 754 aa2.36□□□□□ -2.03
RTP1YMR185W YNL108CP53929 270 aa2.36□□□□□ -2.03
RTP1YMR185W STB3Q12427 513 aa2.36□□□□□ -2.03
RTP1YMR185W SCT1P32784 759 aa2.35□□□□□ -2.03
RTP1YMR185W RPL34BP40525 121 aaKnown RBP2.35□□□□□ -2.03
RTP1YMR185W MSN5P52918 1224 aa2.35□□□□□ -2.03
RTP1YMR185W YMR187CQ03236 431 aa2.35□□□□□ -2.03
RTP1YMR185W TDA6Q06466 467 aa2.35□□□□□ -2.03
RTP1YMR185W RPP0P05317 312 aaKnown RBP2.35□□□□□ -2.03
RTP1YMR185W BOI2P39969 1040 aa2.35□□□□□ -2.03
RTP1YMR185W DOP1Q03921 1698 aa2.35□□□□□ -2.03
RTP1YMR185W SEC7P11075 2009 aaKnown RBP2.35□□□□□ -2.03
RTP1YMR185W NRD1P53617 575 aaKnown RBP RIP-Chip data2.35□□□□□ -2.03not detected
RTP1YMR185W RAV1P47104 1357 aa2.34□□□□□ -2.03
RTP1YMR185W LTE1P07866 1435 aa2.34□□□□□ -2.03
RTP1YMR185W NUP188P52593 1655 aaKnown RBP2.34□□□□□ -2.03
RTP1YMR185W SPT2P06843 333 aaPredicted RBP2.34□□□□□ -2.03
RTP1YMR185W HAL5P38970 855 aaKnown RBP2.34□□□□□ -2.03
RTP1YMR185W SUM1P46676 1062 aa2.34□□□□□ -2.03
RTP1YMR185W NOP7P53261 605 aaKnown RBP2.34□□□□□ -2.03
RTP1YMR185W HDA3Q06623 655 aa2.34□□□□□ -2.03
RTP1YMR185W SYT1Q06836 1226 aa2.34□□□□□ -2.03
RTP1YMR185W DNF2Q12675 1612 aa2.34□□□□□ -2.03
RTP1YMR185W MLP1Q02455 1875 aaKnown RBP2.34□□□□□ -2.04
RTP1YMR185W LEU3P08638 886 aa2.34□□□□□ -2.04
RTP1YMR185W PKC1P24583 1151 aa2.34□□□□□ -2.04
RTP1YMR185W BIO2P32451 375 aa2.34□□□□□ -2.04
RTP1YMR185W MRPL16P38064 232 aa2.34□□□□□ -2.04
RTP1YMR185W JJJ2P46997 583 aa2.34□□□□□ -2.04
RTP1YMR185W YJL007CP47080 104 aa2.34□□□□□ -2.04
RTP1YMR185W RTC1Q08281 1341 aa2.34□□□□□ -2.04
RTP1YMR185W NUP192P47054 1683 aa2.34□□□□□ -2.04
RTP1YMR185W IRE1P32361 1115 aa2.33□□□□□ -2.04
RTP1YMR185W SSN3P39073 555 aa2.33□□□□□ -2.04
RTP1YMR185W TY1A-DR3Q12441 440 aa2.33□□□□□ -2.04
RTP1YMR185W VMR1P38735 1592 aa2.33□□□□□ -2.04
RTP1YMR185W MET1P36150 593 aa2.33□□□□□ -2.04
RTP1YMR185W HPC2Q01448 625 aa2.33□□□□□ -2.04
RTP1YMR185W YDR461C-AQ2V2P7 80 aa2.33□□□□□ -2.04
RTP1YMR185W NUP157P40064 1391 aaKnown RBP2.32□□□□□ -2.04
RTP1YMR185W CCT8P47079 568 aaKnown RBP2.32□□□□□ -2.04
RTP1YMR185W SNF2P22082 1703 aa2.32□□□□□ -2.04
RTP1YMR185W NAB2P32505 525 aaKnown RBP RIP-Chip data2.32□□□□□ -2.04not detected
RTP1YMR185W SLA1P32790 1244 aa2.32□□□□□ -2.04
RTP1YMR185W PAF1P38351 445 aa2.32□□□□□ -2.04
RTP1YMR185W MET10P39692 1035 aa2.32□□□□□ -2.04
RTP1YMR185W SLX8P40072 274 aa2.32□□□□□ -2.04
RTP1YMR185W YIR014WP40570 242 aa2.32□□□□□ -2.04
RTP1YMR185W BUD21Q08492 214 aaPredicted RBP2.32□□□□□ -2.04
RTP1YMR185W CBC2Q08920 208 aaKnown RBP RIP-Chip data2.32□□□□□ -2.04not detected
RTP1YMR185W MET5P47169 1442 aa2.32□□□□□ -2.04
RTP1YMR185W DNF3Q12674 1656 aa2.32□□□□□ -2.04
RTP1YMR185W IML1P47170 1584 aa2.31□□□□□ -2.04
RTP1YMR185W ENO2P00925 437 aaKnown RBP2.31□□□□□ -2.04
RTP1YMR185W TAT1P38085 619 aa2.31□□□□□ -2.04
RTP1YMR185W KTR7P40504 517 aa2.31□□□□□ -2.04
RTP1YMR185W YFL066CP43538 392 aa2.31□□□□□ -2.04
RTP1YMR185W YRB30P53107 440 aaPredicted RBP2.31□□□□□ -2.04
RTP1YMR185W HAP1P0CE41 1502 aa2.31□□□□□ -2.04
RTP1YMR185W GPM1P00950 247 aaKnown RBP2.31□□□□□ -2.04
RTP1YMR185W PDC6P26263 563 aaKnown RBP2.31□□□□□ -2.04
RTP1YMR185W AIM9P40053 627 aaKnown RBP2.31□□□□□ -2.04
Retrieved 100 of 5,963 RNA–protein pairs in 40.5 ms