RNA–Protein interactions for RNA: YLR058C

SHM2, Transcript of Cytosolic serine hydroxymethyltransferase, yeastyeast

Gene SHM2, Length 1,410 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SHM2YLR058C FAS2P19097 1887 aaKnown RBP12.46□□□□□ -0.41
SHM2YLR058C SSA1P10591 642 aaKnown RBP12.45□□□□□ -0.42
SHM2YLR058C VAS1P07806 1104 aaKnown RBP12.44□□□□□ -0.42
SHM2YLR058C BRN1P38170 754 aa12.44□□□□□ -0.42
SHM2YLR058C SHC1P39000 512 aa12.44□□□□□ -0.42
SHM2YLR058C YIR042CP40586 236 aa12.44□□□□□ -0.42
SHM2YLR058C DPL1Q05567 589 aa12.44□□□□□ -0.42
SHM2YLR058C TOS4Q06266 489 aa12.44□□□□□ -0.42
SHM2YLR058C KTR1P27810 393 aaKnown RBP12.43□□□□□ -0.42
SHM2YLR058C INM2Q05533 292 aa12.43□□□□□ -0.42
SHM2YLR058C GAS5Q08193 484 aa12.43□□□□□ -0.42
SHM2YLR058C DIP2Q12220 943 aaPredicted RBP12.43□□□□□ -0.42
SHM2YLR058C RPT3P33298 428 aaKnown RBP12.42□□□□□ -0.42
SHM2YLR058C GCR2Q01722 534 aa12.42□□□□□ -0.42
SHM2YLR058C RPS9BP05755 195 aaKnown RBP12.41□□□□□ -0.42
SHM2YLR058C PBY1P38254 753 aa12.41□□□□□ -0.42
SHM2YLR058C RIM20Q12033 661 aa12.41□□□□□ -0.42
SHM2YLR058C TIF4632P39936 914 aaKnown RBP12.4□□□□□ -0.42
SHM2YLR058C GSM1P42950 618 aa12.4□□□□□ -0.42
SHM2YLR058C SQS1P53866 767 aaKnown RBP12.4□□□□□ -0.42
SHM2YLR058C PSF3Q12146 194 aa12.4□□□□□ -0.42
SHM2YLR058C YMR147WP40218 223 aaKnown RBP12.39□□□□□ -0.43
SHM2YLR058C YFH7P43591 353 aa12.39□□□□□ -0.43
SHM2YLR058C JJJ2P46997 583 aa12.39□□□□□ -0.43
SHM2YLR058C PRP42Q03776 544 aaKnown RBP12.39□□□□□ -0.43
SHM2YLR058C WRS1Q12109 432 aaKnown RBP12.39□□□□□ -0.43
SHM2YLR058C DLD1P32891 587 aa12.38□□□□□ -0.43
SHM2YLR058C AAP1P37898 856 aaKnown RBP12.38□□□□□ -0.43
SHM2YLR058C OSH3P38713 996 aaKnown RBP12.38□□□□□ -0.43
SHM2YLR058C ATG20Q07528 640 aa12.38□□□□□ -0.43
SHM2YLR058C GRX7P38068 203 aa12.37□□□□□ -0.43
SHM2YLR058C STM1P39015 273 aaKnown RBP12.37□□□□□ -0.43
SHM2YLR058C HXT17P53631 564 aa12.37□□□□□ -0.43
SHM2YLR058C FPR4Q06205 392 aaPredicted RBP12.37□□□□□ -0.43
SHM2YLR058C RRG1Q12167 365 aaPredicted RBP12.37□□□□□ -0.43
SHM2YLR058C CYB2P00175 591 aa12.37□□□□□ -0.43
SHM2YLR058C ARG82P07250 355 aa12.37□□□□□ -0.43
SHM2YLR058C PTK1P36002 662 aaPredicted RBP12.37□□□□□ -0.43
SHM2YLR058C HXT13P39924 564 aa12.37□□□□□ -0.43
SHM2YLR058C FPK1P53739 893 aa12.37□□□□□ -0.43
SHM2YLR058C AFG2P32794 780 aa12.35□□□□□ -0.43
SHM2YLR058C BBC1P47068 1157 aa12.35□□□□□ -0.43
SHM2YLR058C FLO11P08640 1367 aa12.35□□□□□ -0.43
SHM2YLR058C OPI1P21957 404 aa12.34□□□□□ -0.43
SHM2YLR058C MSM1P22438 575 aa12.34□□□□□ -0.43
SHM2YLR058C PKH3Q03306 898 aaPredicted RBP12.34□□□□□ -0.43
SHM2YLR058C SNF3P10870 884 aa12.33□□□□□ -0.44
SHM2YLR058C RPS7AP26786 190 aaKnown RBP12.33□□□□□ -0.44
SHM2YLR058C BOI1P38041 980 aaKnown RBP12.33□□□□□ -0.44
SHM2YLR058C KAR5Q04746 504 aa12.33□□□□□ -0.44
SHM2YLR058C LAM4P38800 1345 aa12.33□□□□□ -0.44
SHM2YLR058C MDL2P33311 773 aa12.32□□□□□ -0.44
SHM2YLR058C NPL4P33755 580 aa12.32□□□□□ -0.44
SHM2YLR058C SLI15P38283 698 aa12.32□□□□□ -0.44
SHM2YLR058C IRC8P47046 822 aa12.32□□□□□ -0.44
SHM2YLR058C TAH18Q12181 623 aa12.32□□□□□ -0.44
SHM2YLR058C GEF1P37020 779 aa12.31□□□□□ -0.44
SHM2YLR058C YIR014WP40570 242 aa12.3□□□□□ -0.44
SHM2YLR058C ENP2P48234 707 aaKnown RBP12.3□□□□□ -0.44
SHM2YLR058C ACK1Q07622 623 aaPredicted RBP12.3□□□□□ -0.44
SHM2YLR058C GAP1P19145 602 aaPredicted RBP12.29□□□□□ -0.44
SHM2YLR058C IOC3P43596 787 aa12.29□□□□□ -0.44
SHM2YLR058C PUS6P53294 404 aa12.29□□□□□ -0.44
SHM2YLR058C TRM44Q02648 567 aaKnown RBP12.29□□□□□ -0.44
SHM2YLR058C CRF1Q04930 467 aa12.29□□□□□ -0.44
SHM2YLR058C STV1P37296 890 aa12.28□□□□□ -0.44
SHM2YLR058C APL6P46682 809 aa12.28□□□□□ -0.44
SHM2YLR058C VPS4P52917 437 aa12.28□□□□□ -0.44
SHM2YLR058C NSG2P53898 299 aa12.28□□□□□ -0.44
SHM2YLR058C PPM2Q08282 695 aa12.28□□□□□ -0.44
SHM2YLR058C FLO1P32768 1537 aa12.28□□□□□ -0.44
SHM2YLR058C MET1P36150 593 aa12.27□□□□□ -0.45
SHM2YLR058C PIP2P52960 996 aa12.27□□□□□ -0.45
SHM2YLR058C GLC3P32775 704 aa12.26□□□□□ -0.45
SHM2YLR058C SEN54Q02825 467 aaPredicted RBP12.26□□□□□ -0.45
SHM2YLR058C TRL1P09880 827 aaKnown RBP12.25□□□□□ -0.45
SHM2YLR058C COQ1P18900 473 aa12.25□□□□□ -0.45
SHM2YLR058C FET4P40988 552 aa12.25□□□□□ -0.45
SHM2YLR058C TIM50Q02776 476 aa12.25□□□□□ -0.45
SHM2YLR058C YLR278CQ05854 1341 aa12.24□□□□□ -0.45
SHM2YLR058C TPM1P17536 199 aaKnown RBP12.24□□□□□ -0.45
SHM2YLR058C UTP7P40055 554 aaKnown RBP12.24□□□□□ -0.45
SHM2YLR058C YJL171CP46992 396 aa12.24□□□□□ -0.45
SHM2YLR058C MTC3P53077 123 aa12.24□□□□□ -0.45
SHM2YLR058C YGR117CP53270 476 aa12.24□□□□□ -0.45
SHM2YLR058C THS1P04801 734 aaKnown RBP12.23□□□□□ -0.45
SHM2YLR058C RTG2P32608 588 aaKnown RBP12.23□□□□□ -0.45
SHM2YLR058C SSF2Q12153 453 aaPredicted RBP12.23□□□□□ -0.45
SHM2YLR058C HPR1P17629 752 aaKnown RBP12.22□□□□□ -0.45
SHM2YLR058C SKI2P35207 1287 aaKnown RBP RIP-Chip data12.22□□□□□ -0.45not detected
SHM2YLR058C CIC1P38779 376 aaKnown RBP12.22□□□□□ -0.45
SHM2YLR058C RRP8P38961 392 aaKnown RBP12.22□□□□□ -0.45
SHM2YLR058C AIM9P40053 627 aaKnown RBP12.22□□□□□ -0.45
SHM2YLR058C PGA3Q12746 312 aaKnown RBP12.22□□□□□ -0.45
SHM2YLR058C CHO2P05374 869 aaKnown RBP12.21□□□□□ -0.45
SHM2YLR058C SLN1P39928 1220 aaPredicted RBP12.21□□□□□ -0.45
SHM2YLR058C RLF2Q12495 606 aa12.21□□□□□ -0.45
SHM2YLR058C KRI1P42846 591 aaKnown RBP12.2□□□□□ -0.46
SHM2YLR058C YHL050CP38721 697 aa12.2□□□□□ -0.46
SHM2YLR058C RTS1P38903 757 aa12.2□□□□□ -0.46
Retrieved 100 of 5,963 RNA–protein pairs in 14.2 ms